FC869086

Overview
NameFC869086
Unique NameFC869086
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC869086_ssr23 microsatellite FC869086_ssr23:23..32. BLAST: Citrus ESTs to Prunus persica proteins V1
FC869086_ssr387 microsatellite FC869086_ssr387:387..398. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8146 contig Ccv1_Contig8146:34..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869086 vs. ExPASy Swiss-Prot
Match: TPT_PEA (Triose phosphate/phosphate translocator, chloroplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 5.837e-76
Identity = 150/219 (68.49%), Postives = 163/219 (74.43%), Query Frame = 3
Query:   57 MESRVLSRATTATTISSLRSSPGENHQNVSFVSLKPIGAVGEGGNVIWGRQLRPALLLESSSAPAGLFSGKKEILRPILATASSPAEGSDSTGE--AAPVGFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKFLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPLLHAGASQF 707
            MESRVLSRATT +++ +L         N S  S+K  G+V +GGN++WGRQLRP L        A L       LRP  ATA     G+DS GE   APVGFF RYPAL TGFFFF WYFLNVIFNILNK+IYNYFPYPYFVSVIHL VGVVYCLVSW VGLPKRAPID   LKLLIPVAVCHALGHVTSNVSFAAVAVSFTHT+KALEP  +A ASQF
Sbjct:    1 MESRVLSRATTLSSLPTLNKLHRLPLANASLPSVKSFGSVSDGGNLVWGRQLRPELCSPVLKKGASL-------LRPCPATAG----GNDSAGEEKVAPVGFFSRYPALTTGFFFFTWYFLNVIFNILNKKIYNYFPYPYFVSVIHLAVGVVYCLVSWTVGLPKRAPIDGNLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTVKALEPFFNAAASQF 208          
BLAST of FC869086 vs. ExPASy Swiss-Prot
Match: TPT_FLAPR (Triose phosphate/phosphate translocator, chloroplastic OS=Flaveria pringlei GN=TPT PE=2 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 2.076e-73
Identity = 145/220 (65.91%), Postives = 161/220 (73.18%), Query Frame = 3
Query:   57 MESRVLSR-ATTATTISSLRSSPGENHQNVSFVSLKPIGAVGEGGNVIWGRQLRPALLLESSSAPAGLFSG--KKEILRPILATASSPAEGSDSTGEAAPVGFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKFLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPLLHAGASQF 707
            MESRVLS  ATT + I  L    G            P      GGN++WGRQLRP+LL    S+P  L +   K+++L+P  ATAS      DS G+AAPVGFF +YP LVTGFFFFMWYFLNVIFNILNK+IYNYFPYPYFVS IHL VGVVYCL  WAVGLPKRAP+DS  LKLLIPVA CHALGHVTSNVSFAAVAVSFTHTIK+LEP  +A ASQF
Sbjct:    1 MESRVLSSGATTISGIPRLTRPAGRTTTTTVVAVASPAKLNTNGGNLVWGRQLRPSLLNLDHSSPVSLVTKPVKRDVLKPCTATAS------DSAGDAAPVGFFAKYPFLVTGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSAIHLAVGVVYCLGGWAVGLPKRAPMDSNLLKLLIPVAFCHALGHVTSNVSFAAVAVSFTHTIKSLEPFFNAAASQF 214          
BLAST of FC869086 vs. ExPASy Swiss-Prot
Match: TPT_FLATR (Triose phosphate/phosphate translocator, chloroplastic OS=Flaveria trinervia GN=TPT PE=2 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 4.625e-73
Identity = 143/219 (65.30%), Postives = 159/219 (72.60%), Query Frame = 3
Query:   57 MESRVLSRATTATTISSLRSSPGENHQNVSFVSLKPIGAVGEGGNVIWGRQLRPALLLESSSAPAGLFSG--KKEILRPILATASSPAEGSDSTGEAAPVGFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKFLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPLLHAGASQF 707
            MESRVLS   TA +     + P       +     P      GGNV+WGRQLRP+LL    S+P  L +   K+++L+P  ATAS      DS G+AAPVGF  +YP LVTGFFFFMWYFLNVIFNILNK+IYNYFPYPYFVSVIHL VGVVYCL SW VGLPKRAP+DS  LKLLIPV  CHALGHVTSNVSFAAVAVSFTHTIKALEP  +A ASQF
Sbjct:    1 MESRVLSSGATAISGVPRLTKPAGRITTTTVAVAFPARLNATGGNVVWGRQLRPSLLNLDHSSPVSLVTKPVKRDVLKPCSATAS------DSAGDAAPVGFLAKYPFLVTGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSVIHLAVGVVYCLGSWTVGLPKRAPVDSNILKLLIPVGFCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQF 213          
BLAST of FC869086 vs. ExPASy Swiss-Prot
Match: TPT1_BRAOB (Triose phosphate/phosphate translocator, chloroplastic OS=Brassica oleracea var. botrytis GN=TPT PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.488e-71
Identity = 147/224 (65.62%), Postives = 166/224 (74.11%), Query Frame = 3
Query:   57 MESRVLSRAT-TATTISSLRSSPGENHQNVSFVS------LKPIGAVGEGGNVIWGRQLRPALLLESSSAPAGLFSGKKEILRPILATASSPAEGSDSTGEAAPVGFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKFLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPLLHAGASQF 707
            MESRVL RAT T T +  LR      ++  S  S       KPIG++GEGGN+I GRQLRP LLL+S          K+EIL+P+ A +   AEG DS GE   VGF  +YP LVTG    MWYFLNVIFNILNK+IYNYFPYPYFVSVIHL VGVVYCLVSW+VGLPKRAP++S  LK+LIPVAVCHA+GHVTSNVSFAAVAVSFTHTIKALEP  +A ASQF
Sbjct:    1 MESRVLLRATETVTGVPQLRRPIRAINRQFSTASSSFTAFAKPIGSIGEGGNLISGRQLRPLLLLDS-------LPEKREILKPVRAAS---AEGGDSAGETK-VGFLGKYPWLVTGILLLMWYFLNVIFNILNKKIYNYFPYPYFVSVIHLFVGVVYCLVSWSVGLPKRAPVNSDILKVLIPVAVCHAIGHVTSNVSFAAVAVSFTHTIKALEPFFNASASQF 213          
BLAST of FC869086 vs. ExPASy Swiss-Prot
Match: TPT_SPIOL (Triose phosphate/phosphate translocator, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.786e-70
Identity = 138/219 (63.01%), Postives = 156/219 (71.23%), Query Frame = 3
Query:   57 MESRVLSRATTATTISSLRSSPGENHQNVSFVS--LKPIGAVGEGGNVIWGRQLRPALLLESSSAPAGLFSGKKEILRPILATASSPAEGSDSTGEAAPVGFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKFLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPLLHAGASQF 707
            MESRVLSR T    +  L   P     +  F +    P+G V +GG++ WGRQLRP LLLE      G    ++E       TA  P   +  +   A  GF ++YPALVTG FFFMWYFLNVIFNILNK+IYNYFPYPYFVSVIHL VGVVYCL SW+VGLPKRAP+DSK LKLLIPVAVCHA+GHVTSNVSFAAVAVSFTHTIKALEP  +A ASQF
Sbjct:    1 MESRVLSRTTAIAALPKL-FRPSREAASFGFATGVKTPVGLVKDGGSLTWGRQLRPVLLLEP--VQTGPVCSRRE------KTAVQPCRAASGSSGEAKTGFLEKYPALVTGSFFFMWYFLNVIFNILNKKIYNYFPYPYFVSVIHLFVGVVYCLASWSVGLPKRAPMDSKLLKLLIPVAVCHAIGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQF 210          
BLAST of FC869086 vs. ExPASy Swiss-Prot
Match: TPT_SOLTU (Triose phosphate/phosphate translocator, chloroplastic OS=Solanum tuberosum GN=TPT PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.626e-68
Identity = 133/186 (71.51%), Postives = 149/186 (80.11%), Query Frame = 3
Query:  150 VSLKPIGAVGEGGNVIWGRQLRPALLLESSSAPAGLFSGKKEILRPILATASSPAEGSDSTGEAAPVGFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKFLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPLLHAGASQF 707
            V+ KP+G +  G N+IWGRQLRPA+LLE+S         K+E ++P  A ASS A  SDS+G+A  VGFF++   L TGFFFFMWYFLNVIFNILNK+IYNYFPYPYFVSVIHL VGVVYCLVSW VGLPKRAPIDS  LKLL PVA CHALGHVTSNVSFAAV VSFTHT+KALEP  +A ASQF
Sbjct:   45 VTAKPVGPLIAGPNLIWGRQLRPAILLETSP--------KRESIKPCSAAASSSAGSSDSSGDAK-VGFFNK-ATLTTGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSVIHLAVGVVYCLVSWGVGLPKRAPIDSTQLKLLTPVAFCHALGHVTSNVSFAAVRVSFTHTVKALEPFFNAAASQF 220          
BLAST of FC869086 vs. ExPASy Swiss-Prot
Match: TPT_MAIZE (Triose phosphate/phosphate translocator, chloroplastic OS=Zea mays GN=TPT PE=1 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 7.152e-66
Identity = 121/185 (65.41%), Postives = 146/185 (78.92%), Query Frame = 3
Query:  153 SLKPIGAVGEGGNVIWGRQLRPALLLESSSAPAGLFSGKKEILRPILATASSPAEGSDSTGEAAPVGFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKFLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPLLHAGASQF 707
            ++K   AV +   ++WGRQLRPALLL ++  P+ L   ++  L+P       PA  ++S GEA  VGF ++YPALVTGFFFFMWYFLNVIFNILNK+IYNYFPYPYFVS+IHL+VGVVYCL+SW+VGLPKRAPI+   LKLL PVA+CH +GH+TSNVSFAAVAVSF HTIKALEP   A A+QF
Sbjct:   40 TVKCAAAVPDAAPIVWGRQLRPALLLPAALLPS-LQPARRHTLQP-------PAAAAESAGEAKSVGFLEKYPALVTGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSLIHLVVGVVYCLISWSVGLPKRAPINGTLLKLLFPVALCHGIGHITSNVSFAAVAVSFAHTIKALEPFFSAAATQF 216          
BLAST of FC869086 vs. ExPASy Swiss-Prot
Match: GPT1_ARATH (Glucose-6-phosphate/phosphate translocator 1, chloroplastic OS=Arabidopsis thaliana GN=GPT1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.509e-23
Identity = 52/111 (46.85%), Postives = 69/111 (62.16%), Query Frame = 3
Query:  375 LVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKFLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPLLHAGASQF 707
            L  G +F  W+ LNV+FNI NK++ N +PYP+  S + L  G +  L+SWAVG+ +    D  F K L PVAV H +GHV + VS + VAVSFTH IK+ EP      S+F
Sbjct:   95 LKIGIYFATWWALNVVFNIYNKKVLNAYPYPWLTSTLSLAAGSLMMLISWAVGIVETPKTDFDFWKTLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRF 205          
BLAST of FC869086 vs. ExPASy Swiss-Prot
Match: GPT2_ARATH (Glucose-6-phosphate/phosphate translocator 2, chloroplastic OS=Arabidopsis thaliana GN=GPT2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.277e-22
Identity = 52/111 (46.85%), Postives = 67/111 (60.36%), Query Frame = 3
Query:  375 LVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKFLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPLLHAGASQF 707
            L  G +F  W+ LNV+FNI NK++ N FPYP+  S + L  G +  LVSWA  +      D +F K L PVAV H +GHV + VS + VAVSFTH IK+ EP      S+F
Sbjct:   95 LKIGIYFATWWALNVVFNIYNKKVLNAFPYPWLTSTLSLACGSLMMLVSWATRIADAPKTDLEFWKTLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRF 205          
BLAST of FC869086 vs. ExPASy Swiss-Prot
Match: TPT2_BRAOB (Triose phosphate/phosphate translocator, non-green plastid, chloroplastic OS=Brassica oleracea var. botrytis GN=NGTPT PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.749e-20
Identity = 57/157 (36.31%), Postives = 82/157 (52.23%), Query Frame = 3
Query:  228 LESSSAPAGLFSGKKEILRPILAT------ASSPAEGSDSTGEAAPVGFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKFLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEP 680
            L SS +P   +SG   +  P L T      A++  E  + +G+   V        L  G  F MWY  N+ FNI NK++      P  V+++   VG V     WA+ L KR  I +  L  ++P+AV H LG++ +N+S   V+VSFTHTIKA+EP
Sbjct:   53 LASSDSPLRAWSGLPSVSSPSLDTNRFKTAATAVPEEGEGSGKMTKV--------LELGLLFAMWYLFNIYFNIYNKQVLKALHAPMTVTLVQFAVGSVLITFMWALNLYKRPKISAAQLAAILPLAVVHTLGNLFTNMSLGKVSVSFTHTIKAMEP 201          
The following BLAST results are available for this feature:
BLAST of FC869086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
TPT_PEA5.837e-7668.49Triose phosphate/phosphate translocator, chloropla... [more]
TPT_FLAPR2.076e-7365.91Triose phosphate/phosphate translocator, chloropla... [more]
TPT_FLATR4.625e-7365.30Triose phosphate/phosphate translocator, chloropla... [more]
TPT1_BRAOB1.488e-7165.63Triose phosphate/phosphate translocator, chloropla... [more]
TPT_SPIOL4.786e-7063.01Triose phosphate/phosphate translocator, chloropla... [more]
TPT_SOLTU2.626e-6871.51Triose phosphate/phosphate translocator, chloropla... [more]
TPT_MAIZE7.152e-6665.41Triose phosphate/phosphate translocator, chloropla... [more]
GPT1_ARATH1.509e-2346.85Glucose-6-phosphate/phosphate translocator 1, chlo... [more]
GPT2_ARATH1.277e-2246.85Glucose-6-phosphate/phosphate translocator 2, chlo... [more]
TPT2_BRAOB7.749e-2036.31Triose phosphate/phosphate translocator, non-green... [more]
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Properties
Property NameValue
Genbank descriptionC31008D05EF AbioticL1 Citrus clementina cDNA clone C31008D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869086 ID=FC869086; Name=FC869086; organism=Citrus clementina; type=EST; length=709bp
GAGGCTACGAAAACCACATTTGTCTCTCTCTCAAAAGTAGCCACAGCGGT
GACATGATGGAGTCGCGAGTGCTGTCACGCGCCACCACCGCCACCACCAT
TTCAAGCCTCCGAAGTTCGCCGGGTGAGAACCACCAAAACGTCAGCTTCG
TCTCGTTGAAGCCGATTGGAGCCGTTGGTGAAGGCGGGAATGTCATTTGG
GGAAGACAGCTACGTCCTGCTCTGCTCCTCGAGAGCTCCAGTGCTCCGGC
TGGTCTTTTCTCCGGAAAGAAGGAGATTCTCCGTCCAATCCTCGCCACCG
CTTCTTCTCCTGCCGAAGGAAGCGATTCCACCGGAGAAGCCGCTCCGGTC
GGATTCTTTGACAGGTATCCGGCCCTCGTGACCGGGTTCTTCTTCTTCAT
GTGGTACTTTCTGAACGTGATATTCAACATTCTTAACAAGAGGATTTACA
ATTACTTCCCATATCCTTATTTTGTGTCCGTTATTCATTTGTTGGTTGGG
GTGGTTTACTGTTTGGTGAGCTGGGCTGTGGGCCTTCCCAAGCGAGCTCC
TATTGATTCAAAATTCCTGAAGCTGTTAATCCCTGTTGCTGTGTGTCATG
CATTGGGCCATGTTACCAGCAACGTGTCTTTTGCAGCAGTTGCTGTCTCC
TTTACTCATACCATCAAAGCTCTTGAGCCCCTTCTTCACGCTGGTGCTTC
ACAATTCAT
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