FC869087

Overview
NameFC869087
Unique NameFC869087
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length652
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15308 contig Ccv1_Contig15308:44..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869087 vs. ExPASy Swiss-Prot
Match: NCASE_ARATH (Neutral ceramidase OS=Arabidopsis thaliana GN=At2g38010 PE=3 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 1.464e-83
Identity = 147/219 (67.12%), Postives = 176/219 (80.37%), Query Frame = 1
Query:    1 FCIVSGLPRDFNHSTCGGKNEMCYPRGPGYPDEFESTRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVAIPKQNGGSETVKTCXXXXXXXXXXXXXXXXXXXXFTQGDDKGNPFWRLVRDLLKKPDKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQILQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTTTG--ESNSNVHVVLAGL 651
            FCI +GLP DFNHSTC G+NE+CY RGPGYPDEFESTRIIGE+QF+ AV+LFNKA+EKL+GKI Y+H+YLDFS L+V +PK  GGSETVKTC                    F QGDD+GN FWRLVR++L+ P  EQ+ CQ PKPILLDTGEMK+PYDWAPSILPIQIL++GQLVILSVPGEFTTMAGRRLRDA+K+ + ++   E ++N+HVV+AGL
Sbjct:  337 FCIDTGLPCDFNHSTCNGQNELCYGRGPGYPDEFESTRIIGEKQFKMAVELFNKATEKLQGKIGYQHAYLDFSNLDVTVPKAGGGSETVKTCPAAMGFGFAAGTTDGPGAFDFKQGDDQGNVFWRLVRNVLRTPGPEQVQCQKPKPILLDTGEMKEPYDWAPSILPIQILRIGQLVILSVPGEFTTMAGRRLRDAIKSFLISSDPKEFSNNMHVVIAGL 555          
BLAST of FC869087 vs. ExPASy Swiss-Prot
Match: NCSEB_DICDI (Neutral ceramidase B OS=Dictyostelium discoideum GN=dcd2B PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 9.915e-48
Identity = 98/215 (45.58%), Postives = 133/215 (61.86%), Query Frame = 1
Query:   16 GLPRDFNHSTCGGKNEMCYPRGPGYP-DEFESTRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVAIPKQNGGSETVKTCXXXXXXXXXXXXXXXXXXXXFTQGDDK--GNPFWRLVRDLLKKPDKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQILQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVLAGL 651
            G P D+  STC G+NE C+  GPG   D FEST+IIG  QF KA++LFN AS ++ G + YRHS++ F+ + V  P  N G +   TC                    F Q D+   GNPFW  + D + KP  +QI CQ PKPILLD G M +P  W P ++PIQI+ +GQ+V+++VPGEFTTM+GRRLR++V+ ++   GES  N  V++AGL
Sbjct:  309 GSPCDYKTSTCNGRNEECWSLGPGKDGDMFESTQIIGGNQFNKALELFNNASIQVSGPVQYRHSWVQFTNVSVE-PPYNSGVDNATTCRGAMGYSFAAGTTDGPGAFNFVQSDNNTSGNPFWNFIGDFIAKPTPDQIRCQSPKPILLDVG-MVEPIPWVPDVMPIQIVTIGQIVLVAVPGEFTTMSGRRLRNSVREII---GESIENPIVLIAGL 518          
BLAST of FC869087 vs. ExPASy Swiss-Prot
Match: NCSEA_DICDI (Neutral ceramidase A OS=Dictyostelium discoideum GN=dcd2A PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.899e-44
Identity = 94/214 (43.93%), Postives = 130/214 (60.75%), Query Frame = 1
Query:   16 GLPRDFNHSTCGGKNEMCYPRGPGYP-DEFESTRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVAIPKQNGGSETVKTCXXXXXXXXXXXXXXXXXXXXFTQGDDKG-NPFWRLVRDLLKKPDKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQILQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVLAGL 651
            G P D+  STC GK E C+  GPG   D FEST+IIG  QF KA++LFN A+ ++ GKI YRH++  F+ + V  P  N G E   TC                    F QGD+   NPFW  +  ++ KP  +Q  CQ PKPIL+D G M +P  W P ++P+QI+ +GQ+V+++VPGEFTTM+GRRLR+ V+ ++   G+S  N  V++AGL
Sbjct:  304 GKPCDYKTSTCNGKVEECWALGPGTDGDMFESTQIIGGNQFNKALELFNNATIQVSGKIQYRHTWKPFTNVSVEAP-YNSGVEGATTCRGAMGYSFAGGTTDGPGAFNFIQGDNSTTNPFWNFIGGIIAKPTPQQTACQAPKPILIDVG-MVEPIPWVPDVMPLQIITLGQIVLVAVPGEFTTMSGRRLRNTVREII---GQSIENPIVLIAGL 512          
BLAST of FC869087 vs. ExPASy Swiss-Prot
Match: ASAH2_DANRE (Neutral ceramidase OS=Danio rerio GN=asah2 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.104e-36
Identity = 88/219 (40.18%), Postives = 124/219 (56.62%), Query Frame = 1
Query:    4 CIVSGLPRDFNHSTC--GGKNEMCYPRGPGYPDEFESTRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVAIPKQNGGSETVKTCXXXXXXXXXXXXXXXXXXXXFTQGDDKGNPFWRLVRD-LLKKPDKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQILQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVLAGL 651
            C+ +GL  D+ +S+C  GGK + C   GPG  D FESTRIIGE  F+ A +L+  A ++L G +   H +++ +   V    Q   + T +TC                    F QGD +G+PFW  +RD +L  P  E   C  PKPIL  TGEM  P  W P+I+ +QI+ +G L +++VPGEFTTM+GRR+R+AVK  +    E  +N  VV+AGL
Sbjct:  320 CVNTGLKCDYINSSCPVGGK-KACIAFGPG-EDMFESTRIIGENMFKIAKELYGSAKQELHGPVYGAHQWVNMTDETV----QFNSTHTGRTCKPALGHSFAAGTTDGGGEFNFLQGDTEGDPFWDGIRDAVLGPPSNETKACHQPKPILFSTGEMDSPLPWHPAIVDVQIITIGSLAVVAVPGEFTTMSGRRIREAVKRELEVK-EPFTNAEVVVAGL 531          
BLAST of FC869087 vs. ExPASy Swiss-Prot
Match: ASAH2_RAT (Neutral ceramidase OS=Rattus norvegicus GN=Asah2 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.706e-36
Identity = 90/218 (41.28%), Postives = 123/218 (56.42%), Query Frame = 1
Query:    4 CIVSGLPRDFNHSTC-GGKNEMCYPRGPGYPDEFESTRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVAIPKQNGGSETVKTCXXXXXXXXXXXXXXXXXXXXFTQGDDKGNPFWRLVRD-LLKKPDKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQILQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVLAGL 651
            C+ +G   D + STC  G   MC   GPG  D FEST IIG   ++KA +L   AS+++ G +   H +++ + + V    Q   + TVKTC                     TQG  +GN FW  +RD LL KP +E I CQ PKPIL+ TGE+ +P+ W P I+ IQI+ +G L I ++PGEFTTM+GRRLR+AVK      G    ++ VV+AGL
Sbjct:  343 CVNTGESCDNDKSTCPSGGPSMCMASGPGQ-DMFESTHIIGRVIYQKAKELHASASQEVTGPVLTAHQWVNMTDVSV----QLNATHTVKTCKAALGYSFAAGTIDGVSGLNITQGTTEGNLFWDTLRDQLLGKPSEEIIECQKPKPILIHTGELTKPHPWQPDIVDIQIVTLGSLAIAAIPGEFTTMSGRRLREAVKKEFALYG--MKDMTVVIAGL 553          
BLAST of FC869087 vs. ExPASy Swiss-Prot
Match: ASAH2_HUMAN (Neutral ceramidase OS=Homo sapiens GN=ASAH2 PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.485e-35
Identity = 84/218 (38.53%), Postives = 125/218 (57.34%), Query Frame = 1
Query:    4 CIVSGLPRDFNHSTCG-GKNEMCYPRGPGYPDEFESTRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVAIPKQNGGSETVKTCXXXXXXXXXXXXXXXXXXXXFTQGDDKGNPFWRLVRD-LLKKPDKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQILQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVLAGL 651
            CI +G   D  +STC  G   MC  +GPG  D F+ST+IIG   +++A +L+  AS+++ G +   H ++D + + V +      +   KTC                    FTQG  +G+PFW  +RD +L KP +E   C  PKPILL TGE+ +P+ W P I+ +QI+ +G L I ++PGEFTTM+GRRLR+AV+    + G    N+ VV++GL
Sbjct:  362 CINTGESCDNANSTCPIGGPSMCIAKGPGQ-DMFDSTQIIGRAMYQRAKELYASASQEVTGPLASAHQWVDMTDVTVWL----NSTHASKTCKPALGYSFAAGTIDGVGGLNFTQGKTEGDPFWDTIRDQILGKPSEEIKECHKPKPILLHTGELSKPHPWHPDIVDVQIITLGSLAITAIPGEFTTMSGRRLREAVQAEFASHG--MQNMTVVISGL 572          
BLAST of FC869087 vs. ExPASy Swiss-Prot
Match: ASA2C_HUMAN (Putative neutral ceramidase C OS=Homo sapiens GN=ASAH2C PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.485e-35
Identity = 84/218 (38.53%), Postives = 125/218 (57.34%), Query Frame = 1
Query:    4 CIVSGLPRDFNHSTCG-GKNEMCYPRGPGYPDEFESTRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVAIPKQNGGSETVKTCXXXXXXXXXXXXXXXXXXXXFTQGDDKGNPFWRLVRD-LLKKPDKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQILQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVLAGL 651
            CI +G   D  +STC  G   MC  +GPG  D F+ST+IIG   +++A +L+  AS+++ G +   H ++D + + V +      +   KTC                    FTQG  +G+PFW  +RD +L KP +E   C  PKPILL TGE+ +P+ W P I+ +QI+ +G L I ++PGEFTTM+GRRLR+AV+    + G    N+ VV++GL
Sbjct:  204 CINTGESCDNANSTCPIGGPSMCIAKGPGQ-DMFDSTQIIGRAMYQRAKELYASASQEVTGPLASAHQWVDMTDVTVWL----NSTHASKTCKPALGYSFAAGTIDGVGGLNFTQGKTEGDPFWDTIRDQILGKPSEEIKECHKPKPILLHTGELSKPHPWHPDIVDVQIITLGSLAITAIPGEFTTMSGRRLREAVQAEFASHG--MQNMTVVISGL 414          
BLAST of FC869087 vs. ExPASy Swiss-Prot
Match: ASAH2_MOUSE (Neutral ceramidase OS=Mus musculus GN=Asah2 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.643e-35
Identity = 86/218 (39.45%), Postives = 122/218 (55.96%), Query Frame = 1
Query:    4 CIVSGLPRDFNHSTC-GGKNEMCYPRGPGYPDEFESTRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVAIPKQNGGSETVKTCXXXXXXXXXXXXXXXXXXXXFTQGDDKGNPFWRLVRD-LLKKPDKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQILQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVLAGL 651
            C+ +G   D + STC  G   MC   GPG  D FEST IIG   ++KA +L+  AS+++ G +   H +++ + + V    Q   + TVKTC                     TQG  +G+PFW  +RD LL KP +E + CQ PKPILL +GE+  P+ W P I+ +QI+ VG L I ++PGE TTM+GRR R+A+K      G    ++ VV+AGL
Sbjct:  338 CVNTGESCDNDKSTCPNGGPSMCMASGPGQ-DMFESTHIIGRIIYQKAKELYASASQEVTGPVLAAHQWVNMTDVSV----QLNATHTVKTCKPALGYSFAAGTIDGVSGLNITQGTTEGDPFWDTLRDQLLGKPSEEIVECQKPKPILLHSGELTIPHPWQPDIVDVQIVTVGSLAIAAIPGELTTMSGRRFREAIKKEFALYG--MKDMTVVIAGL 548          
BLAST of FC869087 vs. ExPASy Swiss-Prot
Match: NCASE_DROME (Neutral ceramidase OS=Drosophila melanogaster GN=CDase PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.185e-30
Identity = 77/229 (33.62%), Postives = 113/229 (49.34%), Query Frame = 1
Query:    4 CIVSGLPRDFNHSTCGGKNEMCYPRGPGYPDEFESTRIIGERQFRKAVDLFNKASEK-----LEGKIDYRHSYLDFSQLEVAIPKQNGGS--------ETVKTCXXXXXXXXXXXXXXXXXXXXFTQGDDKGNPFWRLVRDLLKKPDKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQILQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVLAGL 651
            C +SG   D   S C      C+  GPG  D FEST+I+G+R    A+ L N+ S++     + G + + H ++D       +P  NG +        + ++ C                    F QG    NP W  VRD +  P +E I C  PKPILL TG    PY+W P I+  Q+L++G ++I +VP EFTTMAGRRLR+ ++   +  G    +  V++AGL
Sbjct:  284 CSISGNECDLLTSRCPTGEGDCFASGPG-KDMFESTQILGQRLADAALGLLNEQSQESTAREVTGDVRFIHQFVD-------MPNYNGSTYNPLSRKVDKIRGCQPAMGYSFAAGTTDGPGAFSFEQGTTTDNPMWNFVRDFIAAPTQEDIKCHEPKPILLATGRATFPYEWQPKIVSDQLLKIGDVIIAAVPCEFTTMAGRRLRNQIRAAASAVG--GIDTEVIIAGL 502          
BLAST of FC869087 vs. ExPASy Swiss-Prot
Match: NCASE_DROPS (Neutral ceramidase OS=Drosophila pseudoobscura pseudoobscura GN=CDase PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.590e-29
Identity = 76/229 (33.19%), Postives = 112/229 (48.91%), Query Frame = 1
Query:    4 CIVSGLPRDFNHSTCGGKNEMCYPRGPGYPDEFESTRIIGERQFRKAVDLFNKASEK-----LEGKIDYRHSYLDFSQLEVAIPKQNGGS--------ETVKTCXXXXXXXXXXXXXXXXXXXXFTQGDDKGNPFWRLVRDLLKKPDKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQILQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVLAGL 651
            C +SG   D   S C      C+  GPG  D  EST+I+G+R    A+ L N+ S++     + G + + H ++D       +P  NG +        + ++ C                    F QG    NP W  VRD +  P +E I C  PKPILL TG    PY+W P I+  Q+L++G ++I +VP EFTTMAGRRLR+ ++   +  G    +  V++AGL
Sbjct:  284 CSISGNECDLLTSRCPAGEGECFASGPGR-DMVESTQILGQRLADAALGLLNEQSQESTAREVTGDVRFIHQFVD-------MPNYNGSAYNPLSRKIDKIRGCQPAMGYSFAAGTTDGPGAFSFEQGTTTDNPMWNFVRDFIATPTQEDIKCHEPKPILLATGRATFPYEWQPKIVSDQLLKIGDVIIAAVPCEFTTMAGRRLRNQIRAAASAAG--GLDTEVIIAGL 502          
The following BLAST results are available for this feature:
BLAST of FC869087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
NCASE_ARATH1.464e-8367.12Neutral ceramidase OS=Arabidopsis thaliana GN=At2g... [more]
NCSEB_DICDI9.915e-4845.58Neutral ceramidase B OS=Dictyostelium discoideum G... [more]
NCSEA_DICDI3.899e-4443.93Neutral ceramidase A OS=Dictyostelium discoideum G... [more]
ASAH2_DANRE5.104e-3640.18Neutral ceramidase OS=Danio rerio GN=asah2 PE=1 SV... [more]
ASAH2_RAT8.706e-3641.28Neutral ceramidase OS=Rattus norvegicus GN=Asah2 P... [more]
ASAH2_HUMAN1.485e-3538.53Neutral ceramidase OS=Homo sapiens GN=ASAH2 PE=1 S... [more]
ASA2C_HUMAN1.485e-3538.53Putative neutral ceramidase C OS=Homo sapiens GN=A... [more]
ASAH2_MOUSE5.643e-3539.45Neutral ceramidase OS=Mus musculus GN=Asah2 PE=1 S... [more]
NCASE_DROME4.185e-3033.62Neutral ceramidase OS=Drosophila melanogaster GN=C... [more]
NCASE_DROPS1.590e-2933.19Neutral ceramidase OS=Drosophila pseudoobscura pse... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31008D06EF AbioticL1 Citrus clementina cDNA clone C31008D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869087 ID=FC869087; Name=FC869087; organism=Citrus clementina; type=EST; length=652bp
TTCTGTATAGTTTCTGGGCTACCTAGAGACTTCAATCATAGTACCTGTGG
TGGGAAGAATGAGATGTGCTACCCCCGAGGACCTGGTTACCCAGACGAAT
TTGAAAGTACACGTATTATTGGAGAGAGGCAATTTAGAAAAGCTGTAGAT
CTTTTCAATAAAGCATCCGAAAAATTAGAAGGAAAGATTGACTACCGTCA
CAGTTATCTGGACTTCTCCCAGCTTGAGGTGGCAATTCCTAAACAAAATG
GAGGATCAGAGACAGTAAAAACATGTCCTGCTGCTATGGGGTTTGCATTT
GCTGCAGGAACAACTGATGGACCAGGAGCATTTGATTTTACCCAAGGAGA
TGACAAGGGCAATCCTTTTTGGAGGCTGGTACGCGACTTACTTAAAAAAC
CAGATAAGGAACAAATTAATTGTCAGTACCCAAAGCCCATCTTACTCGAT
ACTGGTGAAATGAAGCAACCATACGACTGGGCACCTTCAATACTTCCAAT
TCAGATCCTCCAAGTAGGGCAGCTAGTCATTCTTAGTGTACCTGGAGAGT
TTACGACAATGGCTGGGAGGCGACTTCGTGATGCTGTGAAGACGGTGGTC
ACTACTACTGGTGAATCCAATAGCAATGTTCATGTTGTTTTAGCTGGCTT
GA
back to top