FC869088

Overview
NameFC869088
Unique NameFC869088
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length644
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7427 contig Ccv1_Contig7427:23..667. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869088 vs. ExPASy Swiss-Prot
Match: FERON_ARATH (Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana GN=FER PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.075e-22
Identity = 61/163 (37.42%), Postives = 87/163 (53.37%), Query Frame = 3
Query:   63 IFLACGWLGN--TGPPGQTWVGDVNSQYSPHEDASAPKSTIVTENK---QVPYSKSRVSHSQFTYIFNVTAGQKFIRLHSYPSPKPGFNTXXXXXXXXXXXXTLLRNFSASLAAYGNDRSPFFKEFCINIEDDQRLLNITFTPSPDYNDSYAFINGIEIVSMP 536
            I L CG   +  T    + W+ DV S++       +  S  +T++    +VPY  +RV  S FTY F V +G+KF+RL+ YP+   G N             TLL+NFSAS  A     +   KEF +N+E     LN+TFTP    +++YAF+NGIE+ SMP
Sbjct:   36 ILLNCGGGASNLTDTDNRIWISDVKSKFLSSSSEDSKTSPALTQDPSVPEVPYMTARVFRSPFTYTFPVASGRKFVRLYFYPNSYDGLNATNSLFSVSFGPYTLLKNFSASQTAEALTYAFIIKEFVVNVEGG--TLNMTFTPESAPSNAYAFVNGIEVTSMP 196          
BLAST of FC869088 vs. ExPASy Swiss-Prot
Match: Y5393_ARATH (Probable receptor-like protein kinase At5g39030 OS=Arabidopsis thaliana GN=At5g39030 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.039e-17
Identity = 66/187 (35.29%), Postives = 94/187 (50.27%), Query Frame = 3
Query:   21 VVTGDSNYPLAESNIFLACGWLGNTGPP----GQTWVGDVNSQYSPHEDASAPKSTIVTENK----QVPYSKSRVSHSQFTYIFNVTAGQKFIRLHSYP-SPKPGFNTXXXXXXXXXXXXTLLRNFSASLAAYGN--DRSPFFKEFCINIEDDQRLLNITFTPSPDYNDSYAFINGIEIVSMPLNFY 548
            +V+  +  P    ++FL     G T  P    G+TW  +  +    + D ++  S +  + +    QVPY  +R+  S FTY F V+ G KF+RL+ YP S K GF+             TLL+NFSA L    +  +     KEF + +      LN+TF PS   N+S AF+NGIEIVSMP  FY
Sbjct:   12 LVSVSATAPYKPDDVFLIN--CGETDVPFDNHGRTWTQEEKNILPKNSDNASFSSVVSYKEESGIPQVPYMTARIFRSDFTYSFPVSPGWKFLRLYFYPTSYKSGFDAVNSFVSVTVNDFTLLQNFSADLTVKASIPESKSLIKEFIVPV---YLTLNLTFRPS---NNSLAFVNGIEIVSMPDRFY 190          
BLAST of FC869088 vs. ExPASy Swiss-Prot
Match: Y5389_ARATH (Probable receptor-like protein kinase At5g38990 OS=Arabidopsis thaliana GN=At5g38990 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.443e-16
Identity = 76/222 (34.23%), Postives = 106/222 (47.75%), Query Frame = 3
Query:    3 CHHLAV-------VVTGDSNYPLAESNIFLA-CGWLGNTGP-PGQTWVGDVNSQYSPH--EDASAPKSTIVTEN--KQVPYSKSRVSHSQFTYIFNVTAGQKFIRLHSYPSP-KPGFNTXXXXXXXXXXXXTLLRNFSASLAAYGNDRSPFFKEFCINIEDDQRLLNITFTPSPDYNDSYAFINGIEIVSMPLNFYYTAADDPGGGF----RFVGQDNPYSI 614
            CH L +       VV   ++Y    +++FL  CG   N     G+ W  +     S +  +DAS   S    E+   QVPY K+R+    FTY F V+ G KF+RL+ YP+     F+             TLL NFS   +    + S   KEF + +    + L++TFTPSP   +S AF+NGIEI+SMP  FY        GGF    R VG+D  + I
Sbjct:    3 CHVLVIFTILVSAVVDATASYE--PTDVFLINCGDTSNNMDYSGRNWTTENPKFMSSNAVDDASFTSSASYQESGIPQVPYLKARIFRYDFTYSFPVSPGWKFLRLYFYPTRYGSDFDAVKSFFSVNVNRFTLLHNFSVKASI--PESSSLIKEFIVPV---NQTLDLTFTPSP---NSLAFVNGIEIISMPDRFY------SKGGFDDVVRNVGRDVDFEI 208          
BLAST of FC869088 vs. ExPASy Swiss-Prot
Match: Y5900_ARATH (Putative receptor-like protein kinase At5g39000 OS=Arabidopsis thaliana GN=At5g39000 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.270e-15
Identity = 62/177 (35.03%), Postives = 83/177 (46.89%), Query Frame = 3
Query:   36 SNYPLAESNIFLACGWLGNTGPPGQTWVGD---VNSQYSPHEDASAPKSTIVTENKQVPYSKSRVSHSQFTYIFNVTAGQKFIRLHSYPSPKPG-FNTXXXXXXXXXXXXTLLRNFSASLAAYGNDRSPFF--KEFCINIEDDQRLLNITFTPSPDYNDSYAFINGIEIVSMPLNFY 548
            S Y   +  +F       N    G+ W  +   + S    +   +A  S   +   Q+PY  +R+  S+FTY F VT G  F+RL+ YP+     FN             TLL NFSA L    +     F  KEF I +    + LN+TFTPS    DS AF+NGIEIVS+P  FY
Sbjct:   24 STYEPTDVFLFNCGDTSNNVDVSGRNWTAENQKILSSNLVNASFTAQASYQESGVSQIPYMTARIFRSEFTYSFPVTPGSNFLRLYFYPTRYGSQFNAVKSFFSVKVNGFTLLNNFSADLTVKASKPQTEFIIKEFIIPV---YQTLNLTFTPS---LDSLAFVNGIEIVSIPNRFY 194          
BLAST of FC869088 vs. ExPASy Swiss-Prot
Match: Y5392_ARATH (Probable receptor-like protein kinase At5g39020 OS=Arabidopsis thaliana GN=At5g39020 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.658e-15
Identity = 56/144 (38.89%), Postives = 79/144 (54.86%), Query Frame = 3
Query:  126 VNSQYSPHEDASAPKSTIVTENKQVPYSKSRVSHSQFTYIFNVTAGQKFIRLHSYPSP-KPGFNTXXXXXXXXXXXXTLLRNFSASLAAYGND--RSPFFKEFCINIEDDQRLLNITFTPSPDYNDSYAFINGIEIVSMPLNFY 548
            VN+ ++   +AS  K+ +     ++PY K+R+  S+FTY F VT G  F+RL+ YP+  K GF+             TLLRNF+A      +    +   KEF I +    + LN+TFTPS    +  AF+NGIEIVSMP  FY
Sbjct:   60 VNASFT--SEASYQKAGV----SRIPYMKARIFRSEFTYSFPVTPGSIFLRLYFYPTQYKSGFDAVNSFFSVKVNGFTLLRNFNADSTVQASIPLSNSLIKEFIIPV---HQTLNLTFTPS---KNLLAFVNGIEIVSMPDRFY 191          
BLAST of FC869088 vs. ExPASy Swiss-Prot
Match: ANX1_ARATH (Receptor-like protein kinase ANXUR1 OS=Arabidopsis thaliana GN=ANX1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.823e-12
Identity = 43/122 (35.25%), Postives = 65/122 (53.28%), Query Frame = 3
Query:  198 VPYSKSRVSHSQFTYIFNVTAGQK-FIRLHSYPSPKPGFNTXXXXXXXXXXXXTLLRNFSASLAAYGNDRSPFFKEFCINIEDDQRLLNITFTPSPDYNDSYAFINGIEIVSMPLNFYYTAA 560
            VPY  +R+  +  TY   +   ++  +RL+ YPS   G N             TLL NFSA++      ++   KE+ +    D+ +L+I FTPS  Y D++AFINGIE++ MP   + TAA
Sbjct:   75 VPYMTARIFTAPATYEIPIKGDKRHLLRLYFYPSTYTGLNISNSYFTVEANDVTLLSNFSAAITCQALTQAYLVKEYSL-APTDKDVLSIKFTPSDKYRDAFAFINGIEVIQMP-ELFDTAA 194          
BLAST of FC869088 vs. ExPASy Swiss-Prot
Match: ANX2_ARATH (Receptor-like protein kinase ANXUR2 OS=Arabidopsis thaliana GN=ANX2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.416e-11
Identity = 39/114 (34.21%), Postives = 60/114 (52.63%), Query Frame = 3
Query:  198 VPYSKSRVSHSQFTYIFNVTAGQK-FIRLHSYPSPKPGFNTXXXXXXXXXXXXTLLRNFSASLAAYGNDRSPFFKEFCINIEDDQRLLNITFTPSPDYNDSYAFINGIEIVSMP 536
            VPY  SR+  +  TY   V   ++  +RLH YPS   G N             TLL NFSA++      ++   +E+ +    ++ +L+I FTPS  +  ++AFINGIE++ MP
Sbjct:   76 VPYMTSRIFTAPATYEIPVKGDKRHMLRLHFYPSTYTGLNILDSYFSVAANDLTLLSNFSAAITCQALTQAYLVREYSL-APSEKDVLSIIFTPSDKHPKAFAFINGIEVIPMP 188          
The following BLAST results are available for this feature:
BLAST of FC869088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
FERON_ARATH4.075e-2237.42Receptor-like protein kinase FERONIA OS=Arabidopsi... [more]
Y5393_ARATH1.039e-1735.29Probable receptor-like protein kinase At5g39030 OS... [more]
Y5389_ARATH7.443e-1634.23Probable receptor-like protein kinase At5g38990 OS... [more]
Y5900_ARATH1.270e-1535.03Putative receptor-like protein kinase At5g39000 OS... [more]
Y5392_ARATH1.658e-1538.89Probable receptor-like protein kinase At5g39020 OS... [more]
ANX1_ARATH3.823e-1235.25Receptor-like protein kinase ANXUR1 OS=Arabidopsis... [more]
ANX2_ARATH9.416e-1134.21Receptor-like protein kinase ANXUR2 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionC31008D07EF AbioticL1 Citrus clementina cDNA clone C31008D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869088 ID=FC869088; Name=FC869088; organism=Citrus clementina; type=EST; length=644bp
CCTGTCATCATCTAGCTGTTGTCGTCACCGGTGACTCTAATTACCCTCTA
GCAGAAAGCAACATATTTCTTGCTTGTGGCTGGTTGGGCAACACGGGTCC
TCCCGGCCAGACTTGGGTTGGAGATGTCAACTCTCAATACTCCCCACATG
AAGACGCATCCGCTCCCAAATCAACAATCGTCACTGAAAATAAACAAGTC
CCATATTCAAAATCACGTGTTTCTCATTCGCAATTCACCTACATATTCAA
CGTCACCGCCGGTCAAAAGTTCATCCGCCTGCATTCCTATCCAAGTCCAA
AACCGGGGTTCAATACCTCTGCAGCTTTCTTCTCTGTAAAAGCAGCTTCT
TTCACTCTGTTAAGAAACTTTAGCGCTTCACTTGCAGCATATGGCAACGA
CCGCAGTCCCTTTTTCAAAGAATTCTGCATTAACATCGAAGACGATCAGA
GGCTTTTGAACATAACCTTCACTCCAAGTCCGGATTACAACGATTCATAT
GCTTTTATCAATGGAATTGAGATTGTATCCATGCCCCTCAATTTCTATTA
CACCGCGGCCGATGATCCCGGCGGGGGGTTCAGGTTTGTTGGCCAGGACA
ACCCATACAGTATCTTAACATAAATGCTCTGGCGACTTTATACC
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