FC869090 | Citrus Genome Database

Overview


Name	FC869090
Unique Name	FC869090
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	598

Libraries


Library Name	Type
AbioticL1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig10231	contig	Ccv1_Contig10231:806..1404.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC869090 vs. ExPASy Swiss-Prot
Match: HSP7M_SOLTU (Heat shock 70 kDa protein, mitochondrial OS=Solanum tuberosum GN=HSP68 PE=2 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 5.503e-96
Identity = 168/180 (93.33%), Postives = 176/180 (97.78%), Query Frame = 3

Query:    3 LGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNTLLEFLVSEFKRTEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQ 542
            LGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDN LLEFLVSEFKRTEGIDLSKD+LALQRLREAAEKAKIELSST+QTDINLPFITADASGAKHLNITLTRSKFETLVN+LIERTR PCKNCLKDA ++ KDVDEVLLVGGMTRVPKVQE+VSEIFGKSPSKGVNPDEAVA+GAA+Q
Sbjct:  248 LGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTEGIDLSKDKLALQRLREAAEKAKIELSSTSQTDINLPFITADASGAKHLNITLTRSKFETLVNHLIERTRNPCKNCLKDAGVSLKDVDEVLLVGGMTRVPKVQEIVSEIFGKSPSKGVNPDEAVAMGAALQ 427

HSP 2 Score: 40.4318 bits (93), Expect = 5.503e-96
Identity = 19/19 (100.00%), Postives = 19/19 (100.00%), Query Frame = 2

Query:  542 GGILRGDVKELLLLDVTPL 598
            GGILRGDVKELLLLDVTPL
Sbjct:  428 GGILRGDVKELLLLDVTPL 446

[Close]

BLAST of FC869090 vs. ExPASy Swiss-Prot
Match: HSP7M_PEA (Heat shock 70 kDa protein, mitochondrial OS=Pisum sativum GN=HSP1 PE=2 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 5.054e-94
Identity = 164/180 (91.11%), Postives = 176/180 (97.78%), Query Frame = 3

Query:    3 LGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNTLLEFLVSEFKRTEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQ 542
            LGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDN LL+FLVSEFKRTE IDL+KD+LALQRLREAAEKAKIELSST+QT+INLPFI+ADASGAKHLNITLTRSKFE LVNNLIERT+APCK+CLKDANI+ KDVDEVLLVGGMTRVPKVQ+VVSEIFGKSPSKGVNPDEAVA+GAA+Q
Sbjct:  243 LGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLDFLVSEFKRTESIDLAKDKLALQRLREAAEKAKIELSSTSQTEINLPFISADASGAKHLNITLTRSKFEALVNNLIERTKAPCKSCLKDANISIKDVDEVLLVGGMTRVPKVQQVVSEIFGKSPSKGVNPDEAVAMGAALQ 422

HSP 2 Score: 40.4318 bits (93), Expect = 5.054e-94
Identity = 19/19 (100.00%), Postives = 19/19 (100.00%), Query Frame = 2

Query:  542 GGILRGDVKELLLLDVTPL 598
            GGILRGDVKELLLLDVTPL
Sbjct:  423 GGILRGDVKELLLLDVTPL 441

[Close]

BLAST of FC869090 vs. ExPASy Swiss-Prot
Match: HSP7M_PHAVU (Heat shock 70 kDa protein, mitochondrial OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 1.909e-93
Identity = 164/180 (91.11%), Postives = 174/180 (96.67%), Query Frame = 3

Query:    3 LGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNTLLEFLVSEFKRTEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQ 542
            LGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDN LL+FLV+EFKRTE IDLSKDRLALQRLREAAEKAKIELSST+QT+INLPFITADASGAKHLNITLTRSKFE LVN+LIERT+APCK+CLKDAN++ KDVDEVLLVGGMTRVPKVQEVV  IFGKSPSKGVNPDEAVA+GAAIQ
Sbjct:  242 LGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLDFLVNEFKRTESIDLSKDRLALQRLREAAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFEALVNHLIERTKAPCKSCLKDANVSIKDVDEVLLVGGMTRVPKVQEVVLNIFGKSPSKGVNPDEAVAMGAAIQ 421

HSP 2 Score: 40.4318 bits (93), Expect = 1.909e-93
Identity = 19/19 (100.00%), Postives = 19/19 (100.00%), Query Frame = 2

Query:  542 GGILRGDVKELLLLDVTPL 598
            GGILRGDVKELLLLDVTPL
Sbjct:  422 GGILRGDVKELLLLDVTPL 440

[Close]

BLAST of FC869090 vs. ExPASy Swiss-Prot
Match: DNAK_RHILE (Chaperone protein dnaK OS=Rhizobium leguminosarum GN=dnaK PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 6.665e-76
Identity = 133/180 (73.89%), Postives = 158/180 (87.78%), Query Frame = 3

Query:    3 LGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNTLLEFLVSEFKRTEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQ 542
            LGGGTFD+SILEI +GVFEVK+TNGDTFLGGEDFD  L+E+LV+EFKR  GIDL  D+LALQRL+EAAEKAKIELSS+ QT+INLPFITADASG KHL + LTR+K E+LV++L++RT APCK  LKDA +T  ++DEV+LVGGM+R+PKVQEVV ++FGK P KGVNPDE VALGAAIQ
Sbjct:  194 LGGGTFDISILEIGDGVFEVKSTNGDTFLGGEDFDMRLVEYLVAEFKRDNGIDLKNDKLALQRLKEAAEKAKIELSSSQQTEINLPFITADASGPKHLTLKLTRAKLESLVDDLVQRTIAPCKAALKDAGVTAAEIDEVVLVGGMSRMPKVQEVVKQLFGKEPHKGVNPDEVVALGAAIQ 373

HSP 2 Score: 33.8834 bits (76), Expect = 6.665e-76
Identity = 14/18 (77.78%), Postives = 18/18 (100.00%), Query Frame = 2

Query:  545 GILRGDVKELLLLDVTPL 598
            G+L+GDVK++LLLDVTPL
Sbjct:  375 GVLQGDVKDVLLLDVTPL 392

[Close]

BLAST of FC869090 vs. ExPASy Swiss-Prot
Match: DNAK_RHILW (Chaperone protein dnaK OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=dnaK PE=2 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 8.692e-76
Identity = 133/180 (73.89%), Postives = 157/180 (87.22%), Query Frame = 3

Query:    3 LGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNTLLEFLVSEFKRTEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQ 542
            LGGGTFD+SILEI +GVFEVK+TNGDTFLGGEDFD  L+E+LV EFKR  GIDL  D+LALQRL+EAAEKAKIELSS+ QT+INLPFITADASG KHL + LTR+K E+LV++L++RT APCK  LKDA +T  ++DEV+LVGGM+R+PKVQEVV ++FGK P KGVNPDE VALGAAIQ
Sbjct:  194 LGGGTFDISILEIGDGVFEVKSTNGDTFLGGEDFDMRLVEYLVGEFKRDNGIDLKNDKLALQRLKEAAEKAKIELSSSQQTEINLPFITADASGPKHLTLKLTRAKLESLVDDLVQRTIAPCKAALKDAGVTAAEIDEVVLVGGMSRMPKVQEVVKQLFGKEPHKGVNPDEVVALGAAIQ 373

HSP 2 Score: 33.8834 bits (76), Expect = 8.692e-76
Identity = 14/18 (77.78%), Postives = 18/18 (100.00%), Query Frame = 2

Query:  545 GILRGDVKELLLLDVTPL 598
            G+L+GDVK++LLLDVTPL
Sbjct:  375 GVLQGDVKDVLLLDVTPL 392

[Close]

BLAST of FC869090 vs. ExPASy Swiss-Prot
Match: DNAK_RHIL3 (Chaperone protein dnaK OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=dnaK PE=2 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 8.692e-76
Identity = 133/180 (73.89%), Postives = 157/180 (87.22%), Query Frame = 3

Query:    3 LGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNTLLEFLVSEFKRTEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQ 542
            LGGGTFD+SILEI +GVFEVK+TNGDTFLGGEDFD  L+E+LV EFKR  GIDL  D+LALQRL+EAAEKAKIELSS+ QT+INLPFITADASG KHL + LTR+K E+LV++L++RT APCK  LKDA +T  ++DEV+LVGGM+R+PKVQEVV ++FGK P KGVNPDE VALGAAIQ
Sbjct:  194 LGGGTFDISILEIGDGVFEVKSTNGDTFLGGEDFDMRLVEYLVGEFKRDNGIDLKNDKLALQRLKEAAEKAKIELSSSQQTEINLPFITADASGPKHLTLKLTRAKLESLVDDLVQRTIAPCKAALKDAGVTAAEIDEVVLVGGMSRMPKVQEVVKQLFGKEPHKGVNPDEVVALGAAIQ 373

HSP 2 Score: 33.8834 bits (76), Expect = 8.692e-76
Identity = 14/18 (77.78%), Postives = 18/18 (100.00%), Query Frame = 2

Query:  545 GILRGDVKELLLLDVTPL 598
            G+L+GDVK++LLLDVTPL
Sbjct:  375 GVLQGDVKDVLLLDVTPL 392

[Close]

BLAST of FC869090 vs. ExPASy Swiss-Prot
Match: DNAK_RHIEC (Chaperone protein dnaK OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=dnaK PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 1.479e-75
Identity = 132/180 (73.33%), Postives = 158/180 (87.78%), Query Frame = 3

Query:    3 LGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNTLLEFLVSEFKRTEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQ 542
            LGGGTFD+SILEI +GVFEVK+TNGDTFLGGEDFD  L+E+LV+EFK+  GIDL  D+LALQRL+EAAEKAKIELSS+ QT+INLPFITADASG KHL + LTR+K E+LV++L++RT APCK  LKDA +T  ++DEV+LVGGM+R+PKVQEVV ++FGK P KGVNPDE VALGAAIQ
Sbjct:  194 LGGGTFDISILEIGDGVFEVKSTNGDTFLGGEDFDMRLVEYLVAEFKKDNGIDLKNDKLALQRLKEAAEKAKIELSSSQQTEINLPFITADASGPKHLTLKLTRAKLESLVDDLVQRTIAPCKAALKDAGVTAAEIDEVVLVGGMSRMPKVQEVVKQLFGKEPHKGVNPDEVVALGAAIQ 373

HSP 2 Score: 33.8834 bits (76), Expect = 1.479e-75
Identity = 14/18 (77.78%), Postives = 18/18 (100.00%), Query Frame = 2

Query:  545 GILRGDVKELLLLDVTPL 598
            G+L+GDVK++LLLDVTPL
Sbjct:  375 GVLQGDVKDVLLLDVTPL 392

[Close]

BLAST of FC869090 vs. ExPASy Swiss-Prot
Match: DNAK_RHIE6 (Chaperone protein dnaK OS=Rhizobium etli (strain CIAT 652) GN=dnaK PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 1.479e-75
Identity = 132/180 (73.33%), Postives = 158/180 (87.78%), Query Frame = 3

Query:    3 LGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNTLLEFLVSEFKRTEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQ 542
            LGGGTFD+SILEI +GVFEVK+TNGDTFLGGEDFD  L+E+LV+EFK+  GIDL  D+LALQRL+EAAEKAKIELSS+ QT+INLPFITADASG KHL + LTR+K E+LV++L++RT APCK  LKDA +T  ++DEV+LVGGM+R+PKVQEVV ++FGK P KGVNPDE VALGAAIQ
Sbjct:  194 LGGGTFDISILEIGDGVFEVKSTNGDTFLGGEDFDMRLVEYLVAEFKKDNGIDLKNDKLALQRLKEAAEKAKIELSSSQQTEINLPFITADASGPKHLTLKLTRAKLESLVDDLVQRTIAPCKAALKDAGVTAAEIDEVVLVGGMSRMPKVQEVVKQLFGKEPHKGVNPDEVVALGAAIQ 373

HSP 2 Score: 33.8834 bits (76), Expect = 1.479e-75
Identity = 14/18 (77.78%), Postives = 18/18 (100.00%), Query Frame = 2

Query:  545 GILRGDVKELLLLDVTPL 598
            G+L+GDVK++LLLDVTPL
Sbjct:  375 GVLQGDVKDVLLLDVTPL 392

[Close]

BLAST of FC869090 vs. ExPASy Swiss-Prot
Match: DNAK_METNO (Chaperone protein dnaK OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=dnaK PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 1.479e-75
Identity = 129/180 (71.67%), Postives = 159/180 (88.33%), Query Frame = 3

Query:    3 LGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNTLLEFLVSEFKRTEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQ 542
            LGGGTFDVSILEI +GVFEVK+TNGDTFLGGEDFDN ++E+L +EFKR +GIDL+KD+LALQRL+EAAEKAKIELSS TQT+INLP+ITADASG KHL + L+R+KFE+LV++LI+RT  PC+  LKDA ++  ++DEV+LVGGMTR+PK+Q+VV   FGK P KGVNPDE VA+GAA+Q
Sbjct:  194 LGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDNRIVEYLAAEFKREQGIDLTKDKLALQRLKEAAEKAKIELSSATQTEINLPYITADASGPKHLALKLSRAKFESLVDDLIQRTIEPCRKALKDAGVSANEIDEVVLVGGMTRMPKIQDVVKTFFGKEPHKGVNPDEVVAIGAAVQ 373

HSP 2 Score: 33.8834 bits (76), Expect = 1.479e-75
Identity = 14/18 (77.78%), Postives = 18/18 (100.00%), Query Frame = 2

Query:  545 GILRGDVKELLLLDVTPL 598
            G+L+GDVK++LLLDVTPL
Sbjct:  375 GVLQGDVKDVLLLDVTPL 392

[Close]

BLAST of FC869090 vs. ExPASy Swiss-Prot
Match: DNAK_AGRT5 (Chaperone protein dnaK OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=dnaK PE=2 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 1.479e-75
Identity = 130/180 (72.22%), Postives = 158/180 (87.78%), Query Frame = 3

Query:    3 LGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNTLLEFLVSEFKRTEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQ 542
            LGGGTFD+S+LEI +GVFEVK+TNGDTFLGGEDFD  L+E+L  EFK+ +GIDL  D+LALQRL+EAAEKAKIELSS+ QT+INLPFITADASG KHL + LTR+KFE+LV++L++RT APCK  LKDA +T  ++DEV+LVGGM+R+PKVQEVV ++FGK P KGVNPDE VA+GAAIQ
Sbjct:  194 LGGGTFDISVLEIGDGVFEVKSTNGDTFLGGEDFDMRLVEYLAGEFKKDQGIDLKNDKLALQRLKEAAEKAKIELSSSQQTEINLPFITADASGPKHLTLKLTRAKFESLVDDLVQRTVAPCKAALKDAGVTAAEIDEVVLVGGMSRMPKVQEVVKQLFGKEPHKGVNPDEVVAMGAAIQ 373

HSP 2 Score: 33.8834 bits (76), Expect = 1.479e-75
Identity = 14/18 (77.78%), Postives = 18/18 (100.00%), Query Frame = 2

Query:  545 GILRGDVKELLLLDVTPL 598
            G+L+GDVK++LLLDVTPL
Sbjct:  375 GVLQGDVKDVLLLDVTPL 392

The following BLAST results are available for this feature:

BLAST of FC869090 vs. ExPASy Swiss-Prot

BLAST of FC869090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
HSP7M_SOLTU	5.503e-96	93.33	Heat shock 70 kDa protein, mitochondrial OS=Solanu...	[more]
HSP7M_PEA	5.054e-94	91.11	Heat shock 70 kDa protein, mitochondrial OS=Pisum ...	[more]
HSP7M_PHAVU	1.909e-93	91.11	Heat shock 70 kDa protein, mitochondrial OS=Phaseo...	[more]
DNAK_RHILE	6.665e-76	73.89	Chaperone protein dnaK OS=Rhizobium leguminosarum ...	[more]
DNAK_RHILW	8.692e-76	73.89	Chaperone protein dnaK OS=Rhizobium leguminosarum ...	[more]
DNAK_RHIL3	8.692e-76	73.89	Chaperone protein dnaK OS=Rhizobium leguminosarum ...	[more]
DNAK_RHIEC	1.479e-75	73.33	Chaperone protein dnaK OS=Rhizobium etli (strain C...	[more]
DNAK_RHIE6	1.479e-75	73.33	Chaperone protein dnaK OS=Rhizobium etli (strain C...	[more]
DNAK_METNO	1.479e-75	71.67	Chaperone protein dnaK OS=Methylobacterium nodulan...	[more]
DNAK_AGRT5	1.479e-75	72.22	Chaperone protein dnaK OS=Agrobacterium tumefacien...	[more]

Pages

Properties


Property Name	Value
Genbank description	C31008D09EF AbioticL1 Citrus clementina cDNA clone C31008D09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC869090 ID=FC869090; Name=FC869090; organism=Citrus clementina; type=EST; length=598bp
ATCTTGGTGGCGGAACATTTGATGTCTCAATCCTTGAAATTTCTAATGGA
GTATTTGAGGTGAAAGCAACAAATGGTGACACGTTCTTGGGGGGAGAGGA
TTTTGACAACACTTTGTTGGAGTTTTTAGTGAGTGAATTTAAGAGGACCG
AAGGAATTGATCTGTCAAAGGATAGGCTTGCATTGCAGAGGCTTCGTGAG
GCTGCCGAGAAGGCGAAGATTGAACTTTCATCAACAACCCAGACTGACAT
TAATCTTCCATTCATCACAGCTGATGCGTCAGGTGCAAAGCATTTGAATA
TCACACTTACTAGATCCAAATTTGAGACTTTGGTGAATAACCTGATTGAG
AGGACCAGAGCCCCTTGTAAGAACTGTTTGAAGGATGCCAACATTACCAC
AAAGGATGTGGATGAGGTGCTTTTGGTTGGAGGAATGACCCGTGTGCCAA
AGGTGCAGGAAGTGGTCTCAGAAATCTTTGGTAAGAGTCCAAGCAAGGGA
GTAAATCCTGATGAGGCAGTTGCCCTTGGTGCTGCTATTCAGGTGGTATT
CTTCGTGGCGACGTCAAAGAGTTGCTTCTCTTGGATGTTACACCTCTG