FC869093
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC869093 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 1.387e-41 Identity = 97/160 (60.62%), Postives = 106/160 (66.25%), Query Frame = 2 Query: 212 SSPSRFARNVAVSSEFDQEEDLLSD---EDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXTRVYVGNLSW 652 S SRFARNVA++SEF+ EED +D +FS DLKLFVGNLPF+VDSAQLA LFE+AGNVEMVEVIYDK+TGRSRGFGFVTMSSV EVEAAAQQFNGYEL+GRPLRVN RVYVGNLSW Sbjct: 54 SPASRFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSW 213 HSP 2 Score: 72.7886 bits (177), Expect = 1.766e-12 Identity = 42/112 (37.50%), Postives = 58/112 (51.79%), Query Frame = 2 Query: 203 PLPSSPSRFARNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 538 P P F+R S F GS +++VGNL + VD L LF G V VIYD+ +GRS+GFGFVT S +EV+ A + +G +L+GR +RV+ Sbjct: 169 PPPKREDGFSRGPR--SSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVS 278
BLAST of FC869093 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2) HSP 1 Score: 167.548 bits (423), Expect = 5.270e-41 Identity = 88/114 (77.19%), Postives = 98/114 (85.96%), Query Frame = 2 Query: 218 PSRFARNVAVSSEFD-QEEDLLSDEDGS------NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 538 PSRF RNVAVSS+F+ +E+D+ +D D S +FSPDLKLFVGNL F+VDSAQLA LFE+AGNVEMVEVIYDKVTGRSRGFGFVTMS+ EVEAAAQQFNGYE EGRPLRVN Sbjct: 60 PSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVN 173 HSP 2 Score: 78.1814 bits (191), Expect = 4.204e-14 Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 2 Query: 293 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 538 GS +L+VGNL + VD L LF G V VIYD+ +GRS+GFGFVT+SS +EV+ A NG +L+GR +RV+ Sbjct: 250 GSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVS 331
BLAST of FC869093 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 1.874e-38 Identity = 91/148 (61.49%), Postives = 99/148 (66.89%), Query Frame = 2 Query: 221 SRFARNVAVSSEFDQEEDLLSDEDG----SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRVYVGNLSW 652 SRF R V +S +FDQ ED+ +DG NFSPDLK+FVGNLPFS DSA LA LFE AGNVEMVEVIYDK+TGRSRGFGFVTMSS EEVEAA QQFNGYEL+GR LRVN RVYVGNL+W Sbjct: 53 SRFVRKVTLS-DFDQIEDVEDGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN--SGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAW 197 HSP 2 Score: 77.0258 bits (188), Expect = 9.367e-14 Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 2 Query: 293 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 538 G +F +++VGNL + VD L LF G V +V+YD+ +GRSRGFGFVT SS EEV A + +G +L GR +RV+ Sbjct: 181 GGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVS 262
BLAST of FC869093 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 6.666e-36 Identity = 91/158 (57.59%), Postives = 100/158 (63.29%), Query Frame = 2 Query: 209 PSS--PSRFARNVAVSSEFDQEEDLLSDEDG----SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN----XXXXXXXXXXXXXXXXXXXXXXXXXXXXTRVYVGNLSW 652 PSS SRF R V + +FDQ ED+ ++G NFSPDLK+FVGNL FS DSA LA LFE AGNVEMVEVIYDK+TGRSRGFGFVTMSS EEVEAA QQFNGYEL+GR LRVN RVYVGNL+W Sbjct: 47 PSSCFSSRFVRKVTLP-DFDQIEDVEDGDEGVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAW 203 HSP 2 Score: 77.0258 bits (188), Expect = 9.367e-14 Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 2 Query: 293 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 538 G +F +++VGNL + VD L LF G V +V+YD+ +GRSRGFGFVT SS EEV A + +G +L GR +RV+ Sbjct: 187 GGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVS 268
BLAST of FC869093 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 4.321e-35 Identity = 78/106 (73.58%), Postives = 87/106 (82.08%), Query Frame = 2 Query: 221 SRFARNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 538 S F+ VA+S FDQ ED + + FS DLKLFVGNLPFSVDSA LAGLFE AGNVEMVEVIYDK+TGRSRGFGFVTMS+ EEVEAA QQFNGYE++GR +RVN Sbjct: 57 SSFSTRVALSG-FDQLEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVN 161 HSP 2 Score: 76.2554 bits (186), Expect = 1.598e-13 Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 2 Query: 293 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 538 G + +++VGNL + VD L LF GNV +V+YD+ +GRSRGFGFVT SS +EV A NG +L+GR +RV+ Sbjct: 200 GRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVS 281
BLAST of FC869093 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 2.144e-34 Identity = 76/106 (71.70%), Postives = 88/106 (83.02%), Query Frame = 2 Query: 221 SRFARNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 538 S F+ VA+S +FDQ ED + + FS DLKLFVGNLPFSVDSA LAGLFE AGNVE+VEVIYDK++GRSRGFGFVTMS+ EEVEAA QQFNGYE++GR +RVN Sbjct: 58 SSFSTRVALS-DFDQLEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVN 162 HSP 2 Score: 77.0258 bits (188), Expect = 9.367e-14 Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 2 Query: 293 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 538 G + +++VGNL + VD L LF GNV +V+YD+ +GRSRGFGFVT SS +EV A NG +L+GR +RV+ Sbjct: 201 GRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVS 282
BLAST of FC869093 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.442e-22 Identity = 60/125 (48.00%), Postives = 73/125 (58.40%), Query Frame = 2 Query: 287 EDGSNFSP---DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRVYVGNLSW 652 E G FS + KLFVGNLP+ VDS +LAG+F+ AG VE+ EVIY++ T RSRGFGFVTMS+VEE E A + NGY+++GR L VN RVYVGNL W Sbjct: 43 EGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVN---------KAAPRGSPERAPRGDFEPSCRVYVGNLPW 158 HSP 2 Score: 81.6481 bits (200), Expect = 3.803e-15 Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 2 Query: 299 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 538 +F P +++VGNLP+ VD+++L LF G V V+ D+ TGRSRGFGFVTMSS EV A +G L+GR +RVN Sbjct: 144 DFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVN 223
BLAST of FC869093 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 4.638e-21 Identity = 60/142 (42.25%), Postives = 76/142 (53.52%), Query Frame = 2 Query: 227 FARNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRVYVGNLSW 652 F V + E D+ E +E+ D KLFVGNLP+ VDS LA LFE AG VE+ EVIY++ T +SRGFGFVTMS+VEE E A + +N Y++ GR L VN R+YVGN+ W Sbjct: 107 FVEAVGDAGESDEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSY---------RIYVGNIPW 239 HSP 2 Score: 80.1073 bits (196), Expect = 1.106e-14 Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 2 Query: 302 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 538 F +++VGN+P+ +D A+L LF G V V+YD+ TGRSRGFGFVTM+S E+ A +G L+GR +RVN Sbjct: 226 FEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVN 304
BLAST of FC869093 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 3.926e-20 Identity = 63/160 (39.38%), Postives = 81/160 (50.62%), Query Frame = 2 Query: 221 SRFARNVAVSSEFDQEEDLLSDEDGSNF----------------SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRVYVGNLSW 652 ++F V+V SE D L E G +F S D KLFVGNLP+ +DS LA LF+ AG VE+ EVIY++ T RSRGFGFVTMS+VEE + A + ++ Y+L GR L VN R+YVGN+ W Sbjct: 50 TQFPTFVSVLSEDDNTLVLDDQEQGGDFPSFVGEAGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTY---------RIYVGNIPW 200 HSP 2 Score: 79.7221 bits (195), Expect = 1.445e-14 Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 2 Query: 302 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 538 F P +++VGN+P+ +D A+L +F G V V++D+ +GRSRGFGFVTMSS E+ A +G L+GR +RVN Sbjct: 187 FQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVN 265
BLAST of FC869093 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 3.926e-20 Identity = 61/135 (45.19%), Postives = 75/135 (55.56%), Query Frame = 2 Query: 251 SEFDQEEDLLSDE-DGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRVYVGNLSW 652 SE D E +S+ + S + KLFVGNL + V+S LA LFE AG VE+ EVIY++ T +SRGFGFVTMSSV+E E A ++FN Y+L GR L VN RVYVGNL W Sbjct: 128 SEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAF---------RVYVGNLPW 253 HSP 2 Score: 85.5001 bits (210), Expect = 2.633e-16 Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 2 Query: 302 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 538 + P +++VGNLP+ VD+ +L LF G V V+YD+ TGRSRGFGFVTMS V+E+ A +G LEGR +RVN Sbjct: 240 YEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVN 318 The following BLAST results are available for this feature:
BLAST of FC869093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >FC869093 ID=FC869093; Name=FC869093; organism=Citrus clementina; type=EST; length=653bpback to top |