FC869096

Overview
NameFC869096
Unique NameFC869096
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC869096_ssr179 microsatellite FC869096_ssr179:179..190. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11818 contig Ccv1_Contig11818:134..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869096 vs. ExPASy Swiss-Prot
Match: CCD55_MOUSE (Coiled-coil domain-containing protein 55 OS=Mus musculus GN=Ccdc55 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.208e-24
Identity = 60/147 (40.82%), Postives = 88/147 (59.86%), Query Frame = 3
Query:  198 VEGEISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVRR--KVQDRADTQPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDVSDFYFNL 632
            V   + R+A K +A+K+ + + +KALAED  V++YD  YDEM++K      K+    D +PKYIH L+   + RK+E +   E+K+ +ER  E+  F DKE FVT AYKKKLEE+      +      +   DVTK+ D+S FY +L
Sbjct:   40 VSESLQREAAKKQAMKQTKLEIQKALAEDSTVYEYDSVYDEMQKKKEENNPKLLPGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMENGEFDDKEAFVTSAYKKKLEERAEEEEREKRAAALEAHLDVTKQKDLSGFYRHL 186          
BLAST of FC869096 vs. ExPASy Swiss-Prot
Match: CCD55_RAT (Coiled-coil domain-containing protein 55 OS=Rattus norvegicus GN=Ccdc55 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.229e-23
Identity = 60/147 (40.82%), Postives = 88/147 (59.86%), Query Frame = 3
Query:  198 VEGEISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVRR--KVQDRADTQPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDVSDFYFNL 632
            V   + R+A K +A+++ + + +KALAED  V++YD  YDEM++K      K+    D +PKYIH L+   + RK+E +   E+K+ +ER  E   F DKE FVT AYKKKLEE+      +      + R DVTK+ D+S FY +L
Sbjct:   40 VSESLQREAAKKQAMRQTKLEIQKALAEDSTVYEYDSIYDEMQKKKEENNPKLLMGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFVTSAYKKKLEERAEEEEREKRAAALEARLDVTKQKDLSGFYRHL 186          
BLAST of FC869096 vs. ExPASy Swiss-Prot
Match: CCD55_BOVIN (Coiled-coil domain-containing protein 55 OS=Bos taurus GN=CCDC55 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.097e-23
Identity = 60/147 (40.82%), Postives = 88/147 (59.86%), Query Frame = 3
Query:  198 VEGEISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVRR--KVQDRADTQPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDVSDFYFNL 632
            V   + R+A K +A+K+ + + +KALAED  V++YD  YDEM++K      K+    D +PKYIH L+   + RK+E +   E+K+ +ER  E   F DKE FVT AYKKKL+E+      +      + R DVTK+ D+S FY +L
Sbjct:   42 VSESLQREAAKKQAMKQTKLEIQKALAEDSTVYEYDSIYDEMQKKKEESNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFVTSAYKKKLQERAEEEERERRAAALEARLDVTKQRDLSGFYRHL 188          
BLAST of FC869096 vs. ExPASy Swiss-Prot
Match: CCD55_HUMAN (Coiled-coil domain-containing protein 55 OS=Homo sapiens GN=CCDC55 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.041e-22
Identity = 64/151 (42.38%), Postives = 90/151 (59.60%), Query Frame = 3
Query:  198 VEGEISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVRR--KVQDRADTQPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKL----EEQQRWAREQALRDLRDERDDVTKKTDVSDFYFNL 632
            V   + R+A K +A+K+ + + +KALAED  V++YD  YDEM++K      K+    D +PKYIH L+   + RK+E +   E+K+ +ER  E   F DKE FVT AYKKKL    EE++R  R  AL        DVTK+ D+S FY +L
Sbjct:   41 VSESLQREAAKKQAMKQTKLEIQKALAEDATVYEYDSIYDEMQKKKEENNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFVTSAYKKKLQERAEEEEREKRAAALEACL----DVTKQKDLSGFYRHL 187          
BLAST of FC869096 vs. ExPASy Swiss-Prot
Match: CCD55_DANRE (Coiled-coil domain-containing protein 55 OS=Danio rerio GN=ccdc55 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 3.955e-22
Identity = 53/140 (37.86%), Postives = 87/140 (62.14%), Query Frame = 3
Query:  210 ISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVR--RKVQDRADTQPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDVSDFY 623
            + ++AIK + +K+   + +KAL ED  V++YD  YD+++++ +   +K+    D +PKYI++L+   +ERK+E +   ERK+ KER  E   FADKE FVT AY++KL+E+Q     +      +   DV K+ D+S FY
Sbjct:   43 LQKEAIKKKMMKQTRLEMQKALEEDSTVYEYDNVYDDIQKQRLESNKKLLGGEDKKPKYINQLLRAVEERKKEQERRDERKIQKEREAEGEKFADKEAFVTSAYRQKLKERQEELEREKREAELEAALDVKKQKDLSGFY 182          
BLAST of FC869096 vs. ExPASy Swiss-Prot
Match: CCD55_CAEBR (Coiled-coil domain-containing protein 55 homolog OS=Caenorhabditis briggsae GN=ccdc-55 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.779e-14
Identity = 48/126 (38.10%), Postives = 72/126 (57.14%), Query Frame = 3
Query:  234 RALKEIEEQQRKALAEDPNVFDYDGCYDEMKQ-KSVRRKVQDRADT--QPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKK 602
            R  K  E + +KA AEDP +FDYDG YDE++  K+ +++   +AD   + KY   +I     R+ E     ER+  KER KE   F DKE FVTGAY+K+ EE +++  ++A     ++   V K+
Sbjct:   51 RIQKAAEREHQKAEAEDPTIFDYDGNYDEIQAIKNEKKEEARKADKNKESKYAEAIIKAHARRQLEQFSREERQQIKEREKEAGEFDDKEVFVTGAYRKQQEEVKKYREQEAEEAAFNDMTSVQKQ 176          
BLAST of FC869096 vs. ExPASy Swiss-Prot
Match: CCD55_CAEEL (Coiled-coil domain-containing protein 55 homolog OS=Caenorhabditis elegans GN=ccdc-55 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.964e-14
Identity = 47/126 (37.30%), Postives = 71/126 (56.35%), Query Frame = 3
Query:  234 RALKEIEEQQRKALAEDPNVFDYDGCYDEMKQ-KSVRRKVQDRADT--QPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKK 602
            R  K  E + +KA AEDP +FDYDG YDE++  K+ +++   +AD   + KY   +I     R+ E     ER+  +ER KE   F DKE FVTGAY+K+ EE ++   ++A     ++   V K+
Sbjct:   51 RVQKAAEREHQKAEAEDPTIFDYDGNYDEIQAIKNEKKEEARKADKNRESKYAENIIKAHARRQLEQFSREERQQLREREKEGDEFDDKEVFVTGAYRKQQEEVKKHREQEAEEAAFNDMTSVQKQ 176          
The following BLAST results are available for this feature:
BLAST of FC869096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CCD55_MOUSE7.208e-2440.82Coiled-coil domain-containing protein 55 OS=Mus mu... [more]
CCD55_RAT1.229e-2340.82Coiled-coil domain-containing protein 55 OS=Rattus... [more]
CCD55_BOVIN2.097e-2340.82Coiled-coil domain-containing protein 55 OS=Bos ta... [more]
CCD55_HUMAN1.041e-2242.38Coiled-coil domain-containing protein 55 OS=Homo s... [more]
CCD55_DANRE3.955e-2237.86Coiled-coil domain-containing protein 55 OS=Danio ... [more]
CCD55_CAEBR1.779e-1438.10Coiled-coil domain-containing protein 55 homolog O... [more]
CCD55_CAEEL3.964e-1437.30Coiled-coil domain-containing protein 55 homolog O... [more]
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Properties
Property NameValue
Genbank descriptionC31008E03EF AbioticL1 Citrus clementina cDNA clone C31008E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869096 ID=FC869096; Name=FC869096; organism=Citrus clementina; type=EST; length=636bp
GAACCTTTAATCAGCTTTGTAAACTCGTTCGCTGGAGCCGATGAATCCAC
TCAGCGTATAATTGAAAAATCATGAGTAAATACGGCTTGCAACTTAGGGT
TAATCCATCACAACAAAAGAAACAGCCAACAAATAAGCCTCCGTTGCCAC
CGCCTAAGGCTTTTGGTCTTGATGACGACGGCGGCGGCGGCGACGACGTG
GAGGGAGAAATCTCCCGCCAAGCTATCAAGAACAGGGCTCTCAAAGAGAT
TGAGGAGCAGCAAAGGAAGGCCTTGGCAGAGGATCCAAATGTGTTTGATT
ATGACGGATGTTATGATGAGATGAAGCAGAAAAGTGTCCGACGTAAAGTG
CAGGATCGTGCAGACACACAGCCGAAATATATTCATAAACTGATTCACAA
AGCTGACGAGCGAAAGCGGGAGCATGACATAATCTATGAGAGGAAACTTA
CTAAAGAGAGAAGCAAGGAAGACCACCTTTTTGCAGACAAGGAAAAATTT
GTTACAGGTGCTTACAAGAAGAAACTTGAAGAGCAGCAAAGGTGGGCTCG
TGAACAAGCCTTGCGTGATCTTCGAGATGAGAGAGATGATGTCACCAAGA
AGACTGATGTGAGTGATTTTTACTTCAACCTTCATA
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