FC869110

Overview
NameFC869110
Unique NameFC869110
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length629
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14243 contig Ccv1_Contig14243:43..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRIA_ARATH (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Arabidopsis thaliana GN=petC PE=1 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 5.684e-82
Identity = 141/189 (74.60%), Postives = 161/189 (85.19%), Query Frame = 3
Query:   57 KSGMFCPSRAFLVKPART--QMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHATL 617
            +S +   S    VKP +   QMV K  +G++I CQA+SIPADRVPDM KR+ +NLLLLGA+SLPTG+MLVPYATFF PPG G  GGGT AKDA+GND++AA+WL THGPGDRTLT+GLKGDPTYLVVE DKTLA+YGI+AVCTHLGCVVPWN AENKF+CPCHGSQYN QGRVVRGPAPLSLALAHA +
Sbjct:   16 RSALMAMSSGLFVKPTKMNHQMVRKEKIGLRISCQASSIPADRVPDMEKRKTLNLLLLGALSLPTGYMLVPYATFFVPPGTGGGGGGTPAKDALGNDVVAAEWLKTHGPGDRTLTQGLKGDPTYLVVENDKTLATYGINAVCTHLGCVVPWNKAENKFLCPCHGSQYNAQGRVVRGPAPLSLALAHADI 204          
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRIA_PEA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Pisum sativum GN=petC PE=2 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 1.654e-81
Identity = 141/184 (76.63%), Postives = 159/184 (86.41%), Query Frame = 3
Query:   57 KSGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAH 608
            KSG+ CPS A LVKP RTQM  +   GMKI CQATSIPADRVPDM KR+ +NLLLLGA+SLPT  MLVPY +F  PPG GS+ GGT AKDA+GND++A +WL TH PGDRTLT+GLKGDPTYLVVEKD+TLA++ I+AVCTHLGCVVP+N AENKFICPCHGSQYN+QGRVVRGPAPLSLALAH
Sbjct:   18 KSGISCPSIALLVKPTRTQMTGRGNKGMKITCQATSIPADRVPDMSKRKTLNLLLLGALSLPTAGMLVPYGSFLVPPGSGSSTGGTVAKDAVGNDVVATEWLKTHAPGDRTLTQGLKGDPTYLVVEKDRTLATFAINAVCTHLGCVVPFNQAENKFICPCHGSQYNDQGRVVRGPAPLSLALAH 201          
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRIA_FRIAG (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Fritillaria agrestis GN=petC PE=2 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 1.711e-78
Identity = 135/187 (72.19%), Postives = 153/187 (81.82%), Query Frame = 3
Query:   57 KSGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHATL 617
            K+G + PSRA L K AR     K  +  K+ CQATSIPADRVPDMGKRQ MNLLLLGA+SLPT  ML+PY  FF PP  G  GGG  AKDA+GNDI+AA WL THGPGDRTL +GL+GDPTYLVVE D++LA+YGI+AVCTHLGCVVPWN AENKF+CPCHGSQYNNQG+VVRGPAPLSLAL+H  +
Sbjct:   19 KNGAYSPSRALLGKTARGLYPEKEMVSRKVTCQATSIPADRVPDMGKRQTMNLLLLGALSLPTAGMLIPYGAFFVPPSSGGGGGGIVAKDAVGNDIVAAAWLKTHGPGDRTLAQGLRGDPTYLVVENDRSLATYGINAVCTHLGCVVPWNKAENKFLCPCHGSQYNNQGKVVRGPAPLSLALSHCDI 205          
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRIA_SPIOL (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Spinacia oleracea GN=petC PE=1 SV=2)

HSP 1 Score: 290.041 bits (741), Expect = 6.503e-78
Identity = 139/186 (74.73%), Postives = 159/186 (85.48%), Query Frame = 3
Query:   57 KSGMFCPSRAFLVKPARTQMVTKNPM--GMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAH 608
            K+GMF PS A L K  R  ++       GMK+ CQATSIPAD VPDM KR+ +NLLLLGA+SLPTG+ML+PYA+FF PPG G+  GGT AKDA+GND+IAA+WL TH PGDRTLT+GLKGDPTYLVVE DKTLA++GI+AVCTHLGCVVP+N+AENKFICPCHGSQYNNQGRVVRGPAPLSLALAH
Sbjct:   18 KNGMFAPSLA-LAKAGRVNVLISKERIRGMKLTCQATSIPADNVPDMQKRETLNLLLLGALSLPTGYMLLPYASFFVPPGGGAGTGGTIAKDALGNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAH 202          
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRIB_TOBAC (Cytochrome b6-f complex iron-sulfur subunit 2, chloroplastic OS=Nicotiana tabacum GN=petC2 PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 7.950e-76
Identity = 140/192 (72.92%), Postives = 160/192 (83.33%), Query Frame = 3
Query:   57 KSGMFCPSRAFLVKPARTQMVTKNPMG----MKIKCQATSIPAD-RVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHATL 617
            KSG+   S+  L+KP +   +  + +G    MK+KC ATSIPAD RVPDM KR LMNLLLLGA+SLPT  MLVPYATFFAPPG G   GGT AKDA+GND+IA++WL TH PG+RTLT+GLKGDPTYLVVE D TLA+YGI+AVCTHLGCVVP+N+AENKFICPCHGSQYNNQGRVVRGPAPLSLALAHA +
Sbjct:   16 KSGLSSVSQCLLLKPMK---INSHGLGKDKRMKVKCMATSIPADDRVPDMEKRNLMNLLLLGALSLPTAGMLVPYATFFAPPGSGGGSGGTPAKDALGNDVIASEWLKTHPPGNRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHADI 204          
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRIA_TOBAC (Cytochrome b6-f complex iron-sulfur subunit 1, chloroplastic OS=Nicotiana tabacum GN=petC1 PE=2 SV=2)

HSP 1 Score: 281.182 bits (718), Expect = 3.021e-75
Identity = 139/192 (72.40%), Postives = 158/192 (82.29%), Query Frame = 3
Query:   57 KSGMFCPSRAFLVKPARTQMVTKNPMG----MKIKCQATSIPAD-RVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHATL 617
            KSG+   S+  LVKP +   +  + +G    MK+KC ATSIPAD RVPDM KR LMNLLLLGA+SLPT  MLVPY TFF PPG G   GGT AKDA+GND+IA++WL TH PG+RTLT+GLKGDPTYLVVE D TLA+YGI+AVCTHLGCVVP+N+AENKFICPCHGSQYNNQGRVVRGPAPLSLALAHA +
Sbjct:   16 KSGLSSVSQCLLVKPMK---INSHGLGKDKRMKVKCMATSIPADDRVPDMEKRNLMNLLLLGALSLPTAGMLVPYGTFFVPPGSGGGSGGTPAKDALGNDVIASEWLKTHPPGNRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHADI 204          
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRIA_SOLTU (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Solanum tuberosum GN=petC PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 8.790e-75
Identity = 139/192 (72.40%), Postives = 155/192 (80.73%), Query Frame = 3
Query:   57 KSGMFCPSRAFLVKPARTQMVTKNPMG----MKIKCQATSIPAD-RVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHATL 617
            KSG+   S+A LVKP +   +  + MG    MK KC A SIPAD RVPDM KR LMNLLLLGA++LPTG MLVPYATFFAPPG G    GT AKDA GND++  +WL TH PG RTLT+GLKGDPTYLVVE D TLA+YGI+AVCTHLGCVVPWN+AENKFICPCHGSQYNNQG+VVRGPAPLSLALAHA +
Sbjct:   18 KSGVSSVSQALLVKPMK---INGHGMGKDKRMKAKCMAASIPADDRVPDMEKRNLMNLLLLGALALPTGGMLVPYATFFAPPGSGGGSSGTIAKDANGNDVVVTEWLKTHSPGTRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPWNTAENKFICPCHGSQYNNQGKVVRGPAPLSLALAHADI 206          
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRIA_ORYSJ (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Oryza sativa subsp. japonica GN=petC PE=1 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 7.441e-74
Identity = 136/184 (73.91%), Postives = 150/184 (81.52%), Query Frame = 3
Query:   72 CPSRAFLVKPARTQMVTKNPM---GMKIKCQA-TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHA 611
            C SRA L KP +     +  +      I CQA +SIPADRVPDMGKRQLMNLLLLGA+SLPT  MLVPY  FF P G G+AGGG  AKD +GND++A +WL THGP DRTLT+GLKGDPTYLVVE DKTLA+YGI+AVCTHLGCVVPWN+AENKFICPCHGSQYNNQGRVVRGPAPLSLAL HA
Sbjct:   16 CRSRASLGKPVKGLGFGRERVPRTATTITCQAASSIPADRVPDMGKRQLMNLLLLGAISLPTVGMLVPYGAFFIPAGSGNAGGGQVAKDKLGNDVLAEEWLKTHGPNDRTLTQGLKGDPTYLVVEADKTLATYGINAVCTHLGCVVPWNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALVHA 199          
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRIA_WHEAT (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Triticum aestivum GN=petC PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 4.991e-70
Identity = 127/181 (70.17%), Postives = 142/181 (78.45%), Query Frame = 3
Query:   72 CPSRAF-LVKPARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHA 611
            C +RA  L KP +     +  +   I C A SI ADRVPDM KR+LMNLLLLGA+SLPT  MLVPY +F  P G GS  GG  AKD +GNDI+  DWL THGP DRTL +GLKGDPTYLVVE DKTLA+YGI+AVCTHLGCVVPWN+AENKF+CPCHGSQYNNQG+VVRGPAPLSLAL HA
Sbjct:   16 CRTRASSLCKPVKGLGFGRERIPRNITCMAGSISADRVPDMSKRELMNLLLLGAISLPTFGMLVPYGSFLVPAGSGSNAGGVAAKDKLGNDILVEDWLKTHGPNDRTLAQGLKGDPTYLVVESDKTLATYGINAVCTHLGCVVPWNAAENKFLCPCHGSQYNNQGKVVRGPAPLSLALVHA 196          
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRI_MICAN (Cytochrome b6-f complex iron-sulfur subunit OS=Microcystis aeruginosa (strain NIES-843) GN=petC PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.559e-55
Identity = 96/146 (65.75%), Postives = 117/146 (80.14%), Query Frame = 3
Query:  180 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHATL 617
            VPD+G+RQ MNLL  G ++      L P   +F PP  G  GGG TAKDA+GND+I + +L +H  GDRTL +GLKGDPTYLVV++DKTLA+YGI+AVCTHLGCVVPWN++E KF+CPCHGSQYN +G+VVRGPAPLSLALAHA +
Sbjct:    9 VPDLGRRQFMNLLTFGTITGVAAGALYPIVKYFIPPSAGGTGGGVTAKDALGNDVIVSQFLTSHNAGDRTLAQGLKGDPTYLVVQEDKTLANYGINAVCTHLGCVVPWNASEEKFMCPCHGSQYNAEGKVVRGPAPLSLALAHANV 154          
The following BLAST results are available for this feature:
BLAST of FC869110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
UCRIA_ARATH5.684e-8274.60Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_PEA1.654e-8176.63Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_FRIAG1.711e-7872.19Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_SPIOL6.503e-7874.73Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIB_TOBAC7.950e-7672.92Cytochrome b6-f complex iron-sulfur subunit 2, chl... [more]
UCRIA_TOBAC3.021e-7572.40Cytochrome b6-f complex iron-sulfur subunit 1, chl... [more]
UCRIA_SOLTU8.790e-7572.40Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_ORYSJ7.441e-7473.91Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_WHEAT4.991e-7070.17Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRI_MICAN1.559e-5565.75Cytochrome b6-f complex iron-sulfur subunit OS=Mic... [more]

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Properties
Property NameValue
Genbank descriptionC31008F05EF AbioticL1 Citrus clementina cDNA clone C31008F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869110 ID=FC869110; Name=FC869110; organism=Citrus clementina; type=EST; length=629bp
CAATGGCTTCCTCCTCTTCTCTCTCCTCAGCAACTCCTTCCCAGCTATGC
TCAAGCAAGAGTGGTATGTTCTGTCCATCGAGAGCTTTTCTTGTGAAACC
AGCAAGGACCCAGATGGTGACAAAGAATCCAATGGGAATGAAGATCAAGT
GCCAGGCTACAAGTATTCCAGCTGATAGAGTGCCTGATATGGGCAAGAGG
CAGCTCATGAATTTGCTTCTCTTGGGTGCTGTTTCTCTTCCCACTGGATT
TATGTTGGTTCCTTATGCGACCTTCTTTGCCCCACCCGGTTTAGGAAGTG
CTGGTGGTGGTACTACTGCCAAGGATGCCATTGGCAATGACATCATTGCC
GCTGATTGGCTTAACACGCACGGCCCTGGGGACCGAACCCTCACCGAAGG
ATTGAAGGGAGATCCAACCTACCTTGTTGTGGAAAAAGACAAAACACTTG
CATCATATGGAATCGATGCTGTCTGCACTCACCTTGGATGTGTGGTGCCA
TGGAATTCAGCTGAGAACAAGTTCATCTGTCCCTGCCACGGATCCCAATA
CAATAACCAAGGAAGAGTTGTGAGAGGGCCTGCTCCATTGTCATTGGCAT
TGGCTCATGCCACATTGAAAATGGTAAGG
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