FC869115

Overview
NameFC869115
Unique NameFC869115
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length408
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig98 contig Ccv1_Contig98:99..506. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDHG_CUCSA (Malate dehydrogenase, glyoxysomal OS=Cucumis sativus GN=MDHG PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 2.398e-57
Identity = 109/129 (84.50%), Postives = 116/129 (89.92%), Query Frame = 3
Query:   18 EANQRIFPISAHHYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSILHLYDVVNTPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLF 404
            + NQRI  ISAH +PP  QMEE+S LR+A CRAKGGA GFKVAILGAAGGIGQPLAMLMK+NPLVS+LHLYDVVN PGVTADISH DTGAVVRGFLGQ QLE ALTGMDLV+IPAGVPRKPGMTRDDLF
Sbjct:    6 DVNQRIARISAHLHPPKYQMEESSVLRRANCRAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLERALTGMDLVVIPAGVPRKPGMTRDDLF 134          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDHG_CITLA (Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 5.341e-57
Identity = 108/129 (83.72%), Postives = 116/129 (89.92%), Query Frame = 3
Query:   18 EANQRIFPISAHHYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSILHLYDVVNTPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLF 404
            + NQRI  ISAH +PP  QMEE+S LR+A CRAKGGA GFKVAILGAAGGIGQPLAMLMK+NPLVS+LHLYDVVN PGVTADISH DTGAVVRGFLGQ QLE ALTGMDL+I+PAGVPRKPGMTRDDLF
Sbjct:    6 DVNQRIARISAHLHPPKSQMEESSALRRANCRAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLF 134          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDHG_ORYSJ (Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica GN=Os12g0632700 PE=1 SV=3)

HSP 1 Score: 211.46 bits (537), Expect = 1.114e-54
Identity = 105/135 (77.78%), Postives = 119/135 (88.15%), Query Frame = 3
Query:    3 MEFSSEANQRIFPISAHHYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSILHLYDVVNTPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            ME ++ A +R+  +++H  PP  QMEE+  LR + CRAKG A GFKVAILGA+GGIGQPLA+LMK+NPLVS+LHLYDVVNTPGVTADISH +TGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN
Sbjct:    1 MEDAAAAARRMERLASHLRPPASQMEESPLLRGSNCRAKGAAPGFKVAILGASGGIGQPLALLMKMNPLVSVLHLYDVVNTPGVTADISHMNTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 135          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDHG2_ARATH (Probable malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At2g22780 PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 9.429e-54
Identity = 106/132 (80.30%), Postives = 113/132 (85.61%), Query Frame = 3
Query:   18 EANQRIFPISAHHYPPNL--QMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSILHLYDVVNTPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            + NQRI  ISAH  PPNL  Q+ + S L +  CRAKGG+ GFKVAILGAAGGIGQPLAMLMK+NPLVS+LHLYDV N PGVTADISH DT AVVRGFLGQPQLE ALTGMDLVIIPAGVPRKPGMTRDDLFN
Sbjct:    2 DPNQRIARISAHLNPPNLHNQIADGSGLNRVACRAKGGSPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVANAPGVTADISHMDTSAVVRGFLGQPQLEEALTGMDLVIIPAGVPRKPGMTRDDLFN 133          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDHG_SOYBN (Malate dehydrogenase, glyoxysomal OS=Glycine max PE=2 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 7.982e-53
Identity = 104/135 (77.04%), Postives = 117/135 (86.67%), Query Frame = 3
Query:    3 MEFSSEANQRIFPISAHHYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSILHLYDVVNTPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            ME +S A+ RI  I+ H  P   Q E++ CL+++ CRAKGG +GFKVAILGAAGGIGQPLAMLMK+NPLVS+LHLYDVVNTPGVT+DISH DTGAVVRGFLGQ QLE+AL GMDLVIIPAGVPRKPGMTRDDLFN
Sbjct:    1 MEANSGASDRISRIAGHLRP---QREDDVCLKRSDCRAKGGVSGFKVAILGAAGGIGQPLAMLMKMNPLVSLLHLYDVVNTPGVTSDISHMDTGAVVRGFLGQQQLEDALIGMDLVIIPAGVPRKPGMTRDDLFN 132          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDHG1_ARATH (Malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At5g09660 PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 9.757e-51
Identity = 103/135 (76.30%), Postives = 114/135 (84.44%), Query Frame = 3
Query:    3 MEFSSEANQRIFPISAHHYPPNLQME-ENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSILHLYDVVNTPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLF 404
            MEF  +ANQRI  ISAH  P   QME +NS + +  CRAKGG  GFKVAILGAAGGIGQ L++LMK+NPLVS+LHLYDVVN PGVTAD+SH DTGAVVRGFLG  QLE+ALTGMDLVIIPAG+PRKPGMTRDDLF
Sbjct:    1 MEFRGDANQRIARISAHLTP---QMEAKNSVIGRENCRAKGGNPGFKVAILGAAGGIGQSLSLLMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGIPRKPGMTRDDLF 132          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDHG2_BRANA (Malate dehydrogenase 2, glyoxysomal OS=Brassica napus GN=MDH2 PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 2.839e-50
Identity = 103/136 (75.74%), Postives = 114/136 (83.82%), Query Frame = 3
Query:    3 MEFSSEANQRIFPISAHHYPP-NLQME-ENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSILHLYDVVNTPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLF 404
            MEF  +AN+RI  ISAH  P    QME +NS + +  CRAKGG  GFKVAILGAAGGIGQ L++LMK+NPLVS+LHLYDVVN PGVTAD+SH DTGAVVRGFLG  QLE+ALTGMDLVIIPAGVPRKPGMTRDDLF
Sbjct:    1 MEFRGDANKRIAMISAHLQPSFTPQMEAKNSVMGRENCRAKGGNPGFKVAILGAAGGIGQSLSLLMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGVPRKPGMTRDDLF 136          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDHG1_BRANA (Malate dehydrogenase 1, glyoxysomal OS=Brassica napus GN=MDH1 PE=2 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 5.354e-49
Identity = 102/136 (75.00%), Postives = 112/136 (82.35%), Query Frame = 3
Query:    3 MEFSSEANQRIFPISAHHYPP-NLQME-ENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSILHLYDVVNTPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLF 404
            MEF  +A +RI  ISAH  P    QME +NS +    CRAKGG  GFKVAILGAAGGIGQ L++LMK+NPLVS+LHLYDVVN PGVTAD+SH DTGAVVRGFLG  QLE+ALTGMDLVIIPAGVPRKPGMTRDDLF
Sbjct:    1 MEFRGDAYKRIAMISAHLQPSFTPQMEAKNSVMGLESCRAKGGNPGFKVAILGAAGGIGQSLSLLMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGVPRKPGMTRDDLF 136          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDHM1_ARATH (Malate dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=At1g53240 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.553e-32
Identity = 70/117 (59.83%), Postives = 85/117 (72.65%), Query Frame = 3
Query:   66 NLQMEENSCLRQAKCR---AKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSILHLYDVVNTPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            ++ +  ++  +QA  R   + G     KVAILGAAGGIGQPLA+LMK+NPLVS L LYD+ NTPGV AD+ H +T + V G++G   L  AL G DLVIIPAGVPRKPGMTRDDLFN
Sbjct:    4 SMLVRSSASAKQAVIRRSFSSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSEVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFN 120          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDHM_FRAAN (Malate dehydrogenase, mitochondrial OS=Fragaria ananassa GN=MMDHI PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.947e-32
Identity = 65/90 (72.22%), Postives = 76/90 (84.44%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKINPLVSILHLYDVVNTPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+  TPGV AD+SH +T + V+G+ G+ QL  AL G D+VIIPAGVPRKPGMTRDDLFN
Sbjct:   28 KVAVLGAAGGIGQPLALLMKLNPLVSQLSLYDIAGTPGVAADVSHINTRSEVKGYAGEEQLGEALEGCDVVIIPAGVPRKPGMTRDDLFN 117          
The following BLAST results are available for this feature:
BLAST of FC869115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
MDHG_CUCSA2.398e-5784.50Malate dehydrogenase, glyoxysomal OS=Cucumis sativ... [more]
MDHG_CITLA5.341e-5783.72Malate dehydrogenase, glyoxysomal OS=Citrullus lan... [more]
MDHG_ORYSJ1.114e-5477.78Malate dehydrogenase, glyoxysomal OS=Oryza sativa ... [more]
MDHG2_ARATH9.429e-5480.30Probable malate dehydrogenase, glyoxysomal OS=Arab... [more]
MDHG_SOYBN7.982e-5377.04Malate dehydrogenase, glyoxysomal OS=Glycine max P... [more]
MDHG1_ARATH9.757e-5176.30Malate dehydrogenase, glyoxysomal OS=Arabidopsis t... [more]
MDHG2_BRANA2.839e-5075.74Malate dehydrogenase 2, glyoxysomal OS=Brassica na... [more]
MDHG1_BRANA5.354e-4975.00Malate dehydrogenase 1, glyoxysomal OS=Brassica na... [more]
MDHM1_ARATH4.553e-3259.83Malate dehydrogenase 1, mitochondrial OS=Arabidops... [more]
MDHM_FRAAN5.947e-3272.22Malate dehydrogenase, mitochondrial OS=Fragaria an... [more]

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Properties
Property NameValue
Genbank descriptionC31008F10EF AbioticL1 Citrus clementina cDNA clone C31008F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869115 ID=FC869115; Name=FC869115; organism=Citrus clementina; type=EST; length=408bp
AAATGGAGTTTAGCTCAGAGGCTAATCAGCGCATTTTTCCCATCTCTGCT
CATCATTACCCTCCAAATCTCCAGATGGAGGAGAATTCTTGCTTGAGGCA
AGCTAAGTGCCGGGCAAAAGGCGGGGCAGCTGGATTCAAAGTAGCCATCT
TGGGTGCTGCTGGAGGCATTGGCCAACCCCTTGCAATGCTAATGAAGATA
AACCCCCTGGTCTCAATCCTTCACCTCTATGATGTTGTCAATACCCCTGG
TGTCACTGCTGATATTAGCCATACGGACACCGGCGCTGTGGTACGGGGTT
TCCTAGGCCAGCCACAGCTTGAGAATGCTCTCACAGGGATGGACCTTGTC
ATTATCCCTGCCGGCGTTCCGAGGAAGCCTGGAATGACCAGGGATGATCT
TTTCAATA
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