FC869119

Overview
NameFC869119
Unique NameFC869119
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length615
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC869119_ssr217 microsatellite FC869119_ssr217:217..228. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5796 contig Ccv1_Contig5796:55..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3PA_PEA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2)

HSP 1 Score: 305.834 bits (782), Expect = 1.098e-82
Identity = 153/189 (80.95%), Postives = 170/189 (89.95%), Query Frame = 1
Query:   55 MASATLSVAKSALQGNGKGFSEFSGLRNSAS-LPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAK-LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            MASAT SVAK A++ NGKGFSEFSGLRNS+  LPF RKSSDDFHS++  QT+A+GSS    + +  +AK LKVAINGFGRIGRNFLRCWHGRKDSPL+V+AINDTGGVKQASHLLKYDSTLGIF+ADVKPVGTDGISVDGKVI+VVS+RNP NLPW +LGIDLVIEGTGVFVDREGAG+HI AGAKKVL
Sbjct:    1 MASATFSVAKPAIKANGKGFSEFSGLRNSSRHLPFSRKSSDDFHSLVTFQTNAVGSSGGHKKSLVVEAKQLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGTDGISVDGKVIKVVSDRNPANLPWKELGIDLVIEGTGVFVDREGAGRHITAGAKKVL 189          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3PA_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA PE=2 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 3.906e-80
Identity = 146/177 (82.49%), Postives = 163/177 (92.09%), Query Frame = 1
Query:   85 SALQGNGKGFSEFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            S+LQ + KGFSEFSGLR S+++PFGRK++DD  SV+A QTS +G  +S  ++   +AKLKVAINGFGRIGRNFLRCWHGRKDSPL+V+AINDTGGVKQASHLLKYDSTLGIF+ADVKPVGTDGISVDGKVIQVVS+RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL
Sbjct:    2 SSLQVSNKGFSEFSGLRTSSAIPFGRKTNDDLLSVVAFQTSVIGGGNS--KRGVVEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGTDGISVDGKVIQVVSDRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 176          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3PA_ARATH (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3)

HSP 1 Score: 277.33 bits (708), Expect = 4.182e-74
Identity = 144/189 (76.19%), Postives = 162/189 (85.71%), Query Frame = 1
Query:   55 MASATLSVAKSALQGNGKGFSEFSGLRNS-ASLPFGRK-SSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            MAS T SV K        GF+EFSGLR+S ASLPFG+K SSD+F S+++ QTSA+GSS  GYRK   +AKLKVAINGFGRIGRNFLRCWHGRKDSPL+++AINDTGGVKQASHLLKYDSTLGIF+ADVKP G   ISVDGK+IQVVSNRNP  LPW +LGID+VIEGTGVFVDREGAGKHI+AGAKKV+
Sbjct:    1 MASVTFSVPK--------GFTEFSGLRSSSASLPFGKKLSSDEFVSIVSFQTSAMGSSG-GYRKGVTEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDSTLGIFDADVKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKKVI 180          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3PA_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Spinacia oleracea GN=GAPA PE=1 SV=2)

HSP 1 Score: 272.707 bits (696), Expect = 1.030e-72
Identity = 139/187 (74.33%), Postives = 155/187 (82.89%), Query Frame = 1
Query:   55 MASATLSVAKSALQGNGKGFSEFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            MAS  LS+A  +L+   KGFSEFSGL  S SLPFGRK SDD  + ++ QT+A+G   S    V  +AKLKVAINGFGRIGRNFLRCWHGRKDSPL+VV INDTGGVKQASHLLKYDS LG F+ADVK  G   ISVDGKVI+VVS+RNPVNLPWGD+GIDLVIEGTGVFVDR+GAGKH+QAGAKKVL
Sbjct:    1 MASNMLSIANPSLRVYNKGFSEFSGLHTS-SLPFGRKGSDDLMAFVSFQTNAVGGKRSSQNGVV-EAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVL 185          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3PA_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 6.677e-72
Identity = 143/189 (75.66%), Postives = 160/189 (84.66%), Query Frame = 1
Query:   55 MASATLSVAKSALQGNGKGFSEFSGLRNSASLPFGRKS-SDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKD-SPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            MAS+ LS     LQ  G G SEFSGLR+SASLP  R + SDDF S ++ +T A+G+S  G R+   +AKLKVAINGFGRIGRNFLRCWHGR D SPL+V+AINDTGGVKQASHLLKYDSTLGIF+ADVKPVG + ISVDGKVI+VVS+RNP NLPWG+LGIDLVIEGTGVFVDREGAGKHIQAGAKKVL
Sbjct:    1 MASSMLSATTVPLQQGG-GLSEFSGLRSSASLPMRRNATSDDFMSAVSFRTHAVGTSG-GPRRAPTEAKLKVAINGFGRIGRNFLRCWHGRGDASPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGDNAISVDGKVIKVVSDRNPSNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3PB_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.306e-56
Identity = 110/167 (65.87%), Postives = 134/167 (80.24%), Query Frame = 1
Query:  115 SEFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            ++FSGLR+S S+ F R++S  FH VIA Q +   + ++  R     AKLKVAINGFGRIGRNFLRCWHGRKDSPL+VV +ND+GGVK A+HLLKYDS LG F+ADVK +  +  S+DGK I+VVSNR+P+ LPW +LGID+VIEGTGVFVD  GAGKHIQAGAKKV+
Sbjct:   40 ADFSGLRSSNSVTFTREAS--FHDVIAAQLTTKPTGAAPVRGETV-AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKSATHLLKYDSILGTFKADVKIIDNETFSIDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 203          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 5.679e-55
Identity = 105/167 (62.87%), Postives = 134/167 (80.24%), Query Frame = 1
Query:  118 EFSGLRNSASLPFGRKSSDD-FHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            EFSGL++++ + +   + D  F+ V+A Q ++  + S+  + V   AKLKVAINGFGRIGRNFLRCWHGRKDSPLEV+ +ND+GGVK ASHLLKYDS LG F+A+VK +  + I+VDGK I+VVS+R+P+ LPW +LGID+VIEGTGVFVD  GAGKHIQAGAKKV+
Sbjct:   39 EFSGLKSTSCISYVHSARDSSFYDVVAAQLTSKANGSTAVKGVTV-AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVNDSGGVKNASHLLKYDSMLGTFKAEVKILNNETITVDGKPIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 204          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3PB_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 7.417e-55
Identity = 110/167 (65.87%), Postives = 131/167 (78.44%), Query Frame = 1
Query:  115 SEFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            +EF+GLR+S  + F  K S  F  V++ Q +   + S+   K    AKLKVAINGFGRIGRNFLRCWHGRKDSPL+VV +ND+GGVK ASHLLKYDS LG F+ADVK V  + ISVDGK I+VVS+R+P+ LPW +LGID+VIEGTGVFVD  GAGKHIQAGAKKV+
Sbjct:    9 AEFAGLRSSGCVTFSNKESS-FFDVVSAQLTPKTTRSTPV-KGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDNETISVDGKHIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 173          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3PB_ARATH (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 4.070e-53
Identity = 109/167 (65.27%), Postives = 129/167 (77.25%), Query Frame = 1
Query:  115 SEFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            +EFSGLR S+    G ++S  F   +A Q      ++S   +    AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVV +ND+GGVK ASHLLKYDS LG F+A+VK V  + ISVDGK+I+VVSNR+P+ LPW +LGID+VIEGTGVFVD  GAGKHIQAGA KV+
Sbjct:   39 AEFSGLRMSS---IGGEAS--FFDAVAAQIIPKAVTTSTPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVVLNDSGGVKNASHLLKYDSMLGTFKAEVKIVDNETISVDGKLIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGASKVI 200          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3PA_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Chlamydomonas reinhardtii GN=GAPA PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.656e-49
Identity = 99/146 (67.81%), Postives = 117/146 (80.14%), Query Frame = 1
Query:  202 TSALGSSSSGYRKVAAQA--------KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            T +  SS SG R  AA+A        K++VAINGFGRIGRNFLRCWHGR+++ L+VVAIND+GGVKQASHLLKYDSTLG F ADVK V    ISVDGK I++VS+R+P+ LPW ++ IDLVIEGTGVF+D+ GAGKHIQAGA KVL
Sbjct:   11 TGSAVSSKSGVRAKAARAVVDVRAEKKIRVAINGFGRIGRNFLRCWHGRQNTLLDVVAINDSGGVKQASHLLKYDSTLGTFAADVKIVDDSHISVDGKQIKIVSSRDPLQLPWKEMNIDLVIEGTGVFIDKVGAGKHIQAGASKVL 156          
The following BLAST results are available for this feature:
BLAST of FC869119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3PA_PEA1.098e-8280.95Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_TOBAC3.906e-8082.49Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_ARATH4.182e-7476.19Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_SPIOL1.030e-7274.33Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_MAIZE6.677e-7275.66Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PB_SPIOL2.306e-5665.87Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_PEA5.679e-5562.87Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_TOBAC7.417e-5565.87Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_ARATH4.070e-5365.27Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PA_CHLRE4.656e-4967.81Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]

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Properties
Property NameValue
Genbank descriptionC31008G02EF AbioticL1 Citrus clementina cDNA clone C31008G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869119 ID=FC869119; Name=FC869119; organism=Citrus clementina; type=EST; length=615bp
TCAGCTTAGCGACCACGGCTGGCTCTTGCTTGCATCATCCAGCAAATACC
TATCATGGCTTCGGCCACTCTCTCTGTAGCCAAATCAGCTCTTCAGGGAA
ATGGTAAGGGATTCTCAGAATTCTCAGGTCTACGCAACTCTGCAAGCCTT
CCTTTTGGCAGGAAATCTTCTGATGACTTCCATTCAGTCATTGCTCTCCA
GACCTCTGCTTTAGGAAGCAGCAGCAGCGGGTACAGGAAGGTTGCTGCTC
AGGCAAAGCTGAAGGTTGCAATCAATGGGTTTGGTAGAATTGGTAGGAAC
TTCTTGAGGTGCTGGCACGGCCGCAAGGACTCTCCACTTGAAGTCGTTGC
CATCAATGACACCGGAGGTGTCAAGCAGGCCTCTCACCTCCTCAAGTACG
ACTCCACCCTTGGCATCTTTGAAGCCGATGTTAAACCAGTTGGTACTGAT
GGCATCTCTGTTGATGGCAAGGTCATCCAGGTTGTTTCTAACCGCAACCC
CGTCAATCTCCCCTGGGGGGACTTGGGCATCGACCTTGTGATTGAAGGGA
CAGGAGTGTTTGTAGACAGAGAGGGTGCGGGCAAGCACATTCAGGCTGGT
GCCAAGAAAGTACTT
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