FC869120
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: DHR12_BOVIN (Dehydrogenase/reductase SDR family member 12 OS=Bos taurus GN=DHRS12 PE=2 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 8.887e-37 Identity = 79/185 (42.70%), Postives = 117/185 (63.24%), Query Frame = 1 Query: 142 WRVAAFGVYGYMNFTKNGFKEHSKNFKPEDMQARIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSSGGMYTAHLTDD 696 +R AA+ G +TK+G++ SK+F P+D++ ++ G+ +VTG N+GIG ATA +A RG TV++VCR + E A + I ++GN+N+ L + DLS + F F ++ ++VL+NNAG + N R +T +G E NFA N LG Y +T ++P+LEK D RVITVSSGGM L D Sbjct: 4 YRSAAWFAKGLREYTKSGYESASKDFVPDDLEVQVPGRAFMVTGGNSGIGKATAMEIAKRGGTVHLVCRDHSRAEGAKAEIIRESGNQNIFLHIVDLSLPKSVWKFVENFK-QEHTLNVLINNAGCMVNKRELTEDGLEKNFATNTLGVYVLTTALIPVLEK-EHDPRVITVSSGGMLVQKLNTD 186
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: DHR12_HUMAN (Dehydrogenase/reductase SDR family member 12 OS=Homo sapiens GN=DHRS12 PE=2 SV=2) HSP 1 Score: 148.673 bits (374), Expect = 2.859e-35 Identity = 79/182 (43.41%), Postives = 112/182 (61.54%), Query Frame = 1 Query: 142 WRVAAFGVYGYMNFTKNGFKEHSKNFKPEDMQARIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSSGGMYTAHL 687 +R + G +TK+G++ K+F P D++ +I G+ +VTG N+GIG ATA +A RG TV++VCR + E A I ++GN+N+ L + DLS +I F F + K +HVL+NNAG + N R +T +G E NFA N LG Y +T ++P+LEK D RVITVSSGGM L Sbjct: 4 YRSVVWFAKGLREYTKSGYESACKDFVPHDLEVQIPGRVFLVTGGNSGIGKATALEIAKRGGTVHLVCRDQAPAEDARGEIIRESGNQNIFLHIVDLSDPKQIWKFVENFKQEHK-LHVLINNAGCMVNKRELTEDGLEKNFAANTLGVYILTTGLIPVLEK-EHDPRVITVSSGGMLVQKL 183
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: RDH12_MOUSE (Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 PE=2 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 2.194e-27 Identity = 67/141 (47.52%), Postives = 93/141 (65.96%), Query Frame = 1 Query: 241 RIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSS 663 +I GK V+TGAN GIG TA LA RGA VY+ CR KGE+A S IR+ T N V + DLS I++FA RF ++K +H+L+NNAGV+ T++GFE +F VN LG + +T L++ L+++AP ARV+ +SS Sbjct: 36 QIPGKVVVITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAERFLAEEKKLHILINNAGVMMCPYSKTTDGFETHFGVNHLGHFLLTYLLLERLKESAP-ARVVNLSS 175
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: RDH11_HUMAN (Retinol dehydrogenase 11 OS=Homo sapiens GN=RDH11 PE=1 SV=2) HSP 1 Score: 121.324 bits (303), Expect = 4.888e-27 Identity = 64/141 (45.39%), Postives = 93/141 (65.96%), Query Frame = 1 Query: 241 RIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSS 663 ++ GK VVTGAN GIG TA+ LA RGA VY+ CR EKGE I++ TGN+ V + DLS I++FA F ++K +HVL+NNAGV+ T++GFE++ VN LG + +T L++ L+++AP +R++ VSS Sbjct: 38 QLPGKVVVVTGANTGIGKETAKELAQRGARVYLACRDVEKGELVAKEIQTTTGNQQVLVRKLDLSDTKSIRAFAKGFLAEEKHLHVLINNAGVMMCPYSKTADGFEMHIGVNHLGHFLLTHLLLEKLKESAP-SRIVNVSS 177
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: RDH11_MOUSE (Retinol dehydrogenase 11 OS=Mus musculus GN=Rdh11 PE=2 SV=2) HSP 1 Score: 119.013 bits (297), Expect = 2.426e-26 Identity = 61/149 (40.94%), Postives = 96/149 (64.43%), Query Frame = 1 Query: 241 RIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSSGGMYTAHL 687 ++ GK +VTGAN GIG TA+ LA RGA VY+ CR +KGE A I++ TGN V + DL+ I++FA F ++K +H+L+NNAGV+ T++GFE++ VN LG + +T L++ L+++AP +R++ +SS G + + Sbjct: 35 QLPGKVAIVTGANTGIGKETAKDLAQRGARVYLACRDVDKGELAAREIQAVTGNSQVFVRKLDLADTKSIRAFAKDFLAEEKHLHLLINNAGVMMCPYSKTADGFEMHIGVNHLGHFLLTHLLLEKLKESAP-SRIVNLSSLGHHLGRI 182
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: RDH12_HUMAN (Retinol dehydrogenase 12 OS=Homo sapiens GN=RDH12 PE=1 SV=3) HSP 1 Score: 117.472 bits (293), Expect = 7.058e-26 Identity = 66/141 (46.81%), Postives = 90/141 (63.83%), Query Frame = 1 Query: 241 RIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSS 663 ++ GK V+TGAN GIG TA LASRGA VY+ CR KGE+A S IR T N V + DLS I++FA F ++K +H+L+NNAGV+ T++GFE + VN LG + +T L++ L+ +AP ARV+ VSS Sbjct: 36 QLPGKVVVITGANTGIGKETARELASRGARVYIACRDVLKGESAASEIRVDTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMMCPYSKTADGFETHLGVNHLGHFLLTYLLLERLKVSAP-ARVVNVSS 175
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: RDH12_BOVIN (Retinol dehydrogenase 12 OS=Bos taurus GN=RDH12 PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.054e-25 Identity = 64/138 (46.38%), Postives = 90/138 (65.22%), Query Frame = 1 Query: 250 GKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSS 663 GK V+TGAN GIG TA LA RGA VY+ CR KGE+A S I++ T N V + DLS I++FA F ++K +H+L+NNAGV+ T++GFE + AVN LG + +T L++ L+++AP ARV+ +SS Sbjct: 39 GKVVVITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIQADTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMLCPYSKTADGFETHLAVNHLGHFLLTHLLLGRLKESAP-ARVVNLSS 175
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: RDH13_MOUSE (Retinol dehydrogenase 13 OS=Mus musculus GN=Rdh13 PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.019e-24 Identity = 63/151 (41.72%), Postives = 88/151 (58.28%), Query Frame = 1 Query: 235 QARIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSSGGMYTAHL 687 +A I GK +VTGAN GIG TA LA RG V + CR EK E A IR +T N V E DL+S+ I+ FA + +++ V +LVNNA V+ T +GFE+ F VN LG + +T L++ L+ +AP +R+I +SS H+ Sbjct: 33 KATIPGKTVIVTGANTGIGKQTALELAKRGGNVILACRDMEKCEVAAKDIRGETLNPRVRAERLDLASLKSIREFARKVIKEEERVDILVNNAAVMRCPHWTTEDGFEMQFGVNYLGHFLLTNLLLDKLKASAP-SRIINLSSLAHVAGHI 182
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: RDH13_HUMAN (Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 PE=1 SV=2) HSP 1 Score: 112.849 bits (281), Expect = 1.738e-24 Identity = 62/154 (40.26%), Postives = 91/154 (59.09%), Query Frame = 1 Query: 235 QARIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSSGGMYTAHLTDD 696 +A I GK +VTGAN GIG TA LA RG + + CR EK E A IR +T N +V+ DL+S+ I+ FA + +++ V +L+NNAGV+ T +GFE+ F VN LG + +T L++ L+ +AP +R+I +SS H+ D Sbjct: 33 KATIPGKTVIVTGANTGIGKQTALELARRGGNIILACRDMEKCEAAAKDIRGETLNHHVNARHLDLASLKSIREFAAKIIEEEERVDILINNAGVMRCPHWTTEDGFEMQFGVNHLGHFLLTNLLLDKLKASAP-SRIINLSSLAHVAGHIDFD 185
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: DHRSX_HUMAN (Dehydrogenase/reductase SDR family member on chromosome X OS=Homo sapiens GN=DHRSX PE=2 SV=2) HSP 1 Score: 109.768 bits (273), Expect = 1.472e-23 Identity = 59/148 (39.86%), Postives = 89/148 (60.14%), Query Frame = 1 Query: 262 VVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAP---DARVITVSSGGMYTAHLTDD 696 +VTG GIGY+TA+ LA G V + + K + +S I+ +T N+ V CDL+S+T I+ F +F +K P+HVL+NNAGV+ + T +GFE +F +N LG + +T L++ L+++ ARV+TVSS Y A L D Sbjct: 47 IVTGGTDGIGYSTAKHLARLGMHVIIAGNNDSKAKQVVSKIKEETLNDKVEFLYCDLASMTSIRQFVQKFKMKKIPLHVLINNAGVMMVPQRKTRDGFEEHFGLNYLGHFLLTNLLLDTLKESGSPGHSARVVTVSSATHYVAELNMD 194 The following BLAST results are available for this feature:
BLAST of FC869120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 41
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Sequences
The
following sequences are available for this feature:
EST sequence >FC869120 ID=FC869120; Name=FC869120; organism=Citrus clementina; type=EST; length=697bpback to top |