FC869120

Overview
NameFC869120
Unique NameFC869120
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9458 contig Ccv1_Contig9458:1..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: DHR12_BOVIN (Dehydrogenase/reductase SDR family member 12 OS=Bos taurus GN=DHRS12 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.887e-37
Identity = 79/185 (42.70%), Postives = 117/185 (63.24%), Query Frame = 1
Query:  142 WRVAAFGVYGYMNFTKNGFKEHSKNFKPEDMQARIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSSGGMYTAHLTDD 696
            +R AA+   G   +TK+G++  SK+F P+D++ ++ G+  +VTG N+GIG ATA  +A RG TV++VCR   + E A + I  ++GN+N+ L + DLS    +  F   F  ++  ++VL+NNAG + N R +T +G E NFA N LG Y +T  ++P+LEK   D RVITVSSGGM    L  D
Sbjct:    4 YRSAAWFAKGLREYTKSGYESASKDFVPDDLEVQVPGRAFMVTGGNSGIGKATAMEIAKRGGTVHLVCRDHSRAEGAKAEIIRESGNQNIFLHIVDLSLPKSVWKFVENFK-QEHTLNVLINNAGCMVNKRELTEDGLEKNFATNTLGVYVLTTALIPVLEK-EHDPRVITVSSGGMLVQKLNTD 186          
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: DHR12_HUMAN (Dehydrogenase/reductase SDR family member 12 OS=Homo sapiens GN=DHRS12 PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.859e-35
Identity = 79/182 (43.41%), Postives = 112/182 (61.54%), Query Frame = 1
Query:  142 WRVAAFGVYGYMNFTKNGFKEHSKNFKPEDMQARIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSSGGMYTAHL 687
            +R   +   G   +TK+G++   K+F P D++ +I G+  +VTG N+GIG ATA  +A RG TV++VCR +   E A   I  ++GN+N+ L + DLS   +I  F   F  + K +HVL+NNAG + N R +T +G E NFA N LG Y +T  ++P+LEK   D RVITVSSGGM    L
Sbjct:    4 YRSVVWFAKGLREYTKSGYESACKDFVPHDLEVQIPGRVFLVTGGNSGIGKATALEIAKRGGTVHLVCRDQAPAEDARGEIIRESGNQNIFLHIVDLSDPKQIWKFVENFKQEHK-LHVLINNAGCMVNKRELTEDGLEKNFAANTLGVYILTTGLIPVLEK-EHDPRVITVSSGGMLVQKL 183          
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: RDH12_MOUSE (Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.194e-27
Identity = 67/141 (47.52%), Postives = 93/141 (65.96%), Query Frame = 1
Query:  241 RIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSS 663
            +I GK  V+TGAN GIG  TA  LA RGA VY+ CR   KGE+A S IR+ T N  V +   DLS    I++FA RF  ++K +H+L+NNAGV+      T++GFE +F VN LG + +T L++  L+++AP ARV+ +SS
Sbjct:   36 QIPGKVVVITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAERFLAEEKKLHILINNAGVMMCPYSKTTDGFETHFGVNHLGHFLLTYLLLERLKESAP-ARVVNLSS 175          
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: RDH11_HUMAN (Retinol dehydrogenase 11 OS=Homo sapiens GN=RDH11 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 4.888e-27
Identity = 64/141 (45.39%), Postives = 93/141 (65.96%), Query Frame = 1
Query:  241 RIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSS 663
            ++ GK  VVTGAN GIG  TA+ LA RGA VY+ CR  EKGE     I++ TGN+ V +   DLS    I++FA  F  ++K +HVL+NNAGV+      T++GFE++  VN LG + +T L++  L+++AP +R++ VSS
Sbjct:   38 QLPGKVVVVTGANTGIGKETAKELAQRGARVYLACRDVEKGELVAKEIQTTTGNQQVLVRKLDLSDTKSIRAFAKGFLAEEKHLHVLINNAGVMMCPYSKTADGFEMHIGVNHLGHFLLTHLLLEKLKESAP-SRIVNVSS 177          
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: RDH11_MOUSE (Retinol dehydrogenase 11 OS=Mus musculus GN=Rdh11 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.426e-26
Identity = 61/149 (40.94%), Postives = 96/149 (64.43%), Query Frame = 1
Query:  241 RIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSSGGMYTAHL 687
            ++ GK  +VTGAN GIG  TA+ LA RGA VY+ CR  +KGE A   I++ TGN  V +   DL+    I++FA  F  ++K +H+L+NNAGV+      T++GFE++  VN LG + +T L++  L+++AP +R++ +SS G +   +
Sbjct:   35 QLPGKVAIVTGANTGIGKETAKDLAQRGARVYLACRDVDKGELAAREIQAVTGNSQVFVRKLDLADTKSIRAFAKDFLAEEKHLHLLINNAGVMMCPYSKTADGFEMHIGVNHLGHFLLTHLLLEKLKESAP-SRIVNLSSLGHHLGRI 182          
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: RDH12_HUMAN (Retinol dehydrogenase 12 OS=Homo sapiens GN=RDH12 PE=1 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 7.058e-26
Identity = 66/141 (46.81%), Postives = 90/141 (63.83%), Query Frame = 1
Query:  241 RIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSS 663
            ++ GK  V+TGAN GIG  TA  LASRGA VY+ CR   KGE+A S IR  T N  V +   DLS    I++FA  F  ++K +H+L+NNAGV+      T++GFE +  VN LG + +T L++  L+ +AP ARV+ VSS
Sbjct:   36 QLPGKVVVITGANTGIGKETARELASRGARVYIACRDVLKGESAASEIRVDTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMMCPYSKTADGFETHLGVNHLGHFLLTYLLLERLKVSAP-ARVVNVSS 175          
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: RDH12_BOVIN (Retinol dehydrogenase 12 OS=Bos taurus GN=RDH12 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.054e-25
Identity = 64/138 (46.38%), Postives = 90/138 (65.22%), Query Frame = 1
Query:  250 GKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSS 663
            GK  V+TGAN GIG  TA  LA RGA VY+ CR   KGE+A S I++ T N  V +   DLS    I++FA  F  ++K +H+L+NNAGV+      T++GFE + AVN LG + +T L++  L+++AP ARV+ +SS
Sbjct:   39 GKVVVITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIQADTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMLCPYSKTADGFETHLAVNHLGHFLLTHLLLGRLKESAP-ARVVNLSS 175          
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: RDH13_MOUSE (Retinol dehydrogenase 13 OS=Mus musculus GN=Rdh13 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.019e-24
Identity = 63/151 (41.72%), Postives = 88/151 (58.28%), Query Frame = 1
Query:  235 QARIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSSGGMYTAHL 687
            +A I GK  +VTGAN GIG  TA  LA RG  V + CR  EK E A   IR +T N  V  E  DL+S+  I+ FA +   +++ V +LVNNA V+      T +GFE+ F VN LG + +T L++  L+ +AP +R+I +SS      H+
Sbjct:   33 KATIPGKTVIVTGANTGIGKQTALELAKRGGNVILACRDMEKCEVAAKDIRGETLNPRVRAERLDLASLKSIREFARKVIKEEERVDILVNNAAVMRCPHWTTEDGFEMQFGVNYLGHFLLTNLLLDKLKASAP-SRIINLSSLAHVAGHI 182          
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: RDH13_HUMAN (Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.738e-24
Identity = 62/154 (40.26%), Postives = 91/154 (59.09%), Query Frame = 1
Query:  235 QARIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSSGGMYTAHLTDD 696
            +A I GK  +VTGAN GIG  TA  LA RG  + + CR  EK E A   IR +T N +V+    DL+S+  I+ FA +   +++ V +L+NNAGV+      T +GFE+ F VN LG + +T L++  L+ +AP +R+I +SS      H+  D
Sbjct:   33 KATIPGKTVIVTGANTGIGKQTALELARRGGNIILACRDMEKCEAAAKDIRGETLNHHVNARHLDLASLKSIREFAAKIIEEEERVDILINNAGVMRCPHWTTEDGFEMQFGVNHLGHFLLTNLLLDKLKASAP-SRIINLSSLAHVAGHIDFD 185          
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: DHRSX_HUMAN (Dehydrogenase/reductase SDR family member on chromosome X OS=Homo sapiens GN=DHRSX PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.472e-23
Identity = 59/148 (39.86%), Postives = 89/148 (60.14%), Query Frame = 1
Query:  262 VVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAP---DARVITVSSGGMYTAHLTDD 696
            +VTG   GIGY+TA+ LA  G  V +   +  K +  +S I+ +T N+ V    CDL+S+T I+ F  +F +K  P+HVL+NNAGV+   +  T +GFE +F +N LG + +T L++  L+++      ARV+TVSS   Y A L  D
Sbjct:   47 IVTGGTDGIGYSTAKHLARLGMHVIIAGNNDSKAKQVVSKIKEETLNDKVEFLYCDLASMTSIRQFVQKFKMKKIPLHVLINNAGVMMVPQRKTRDGFEEHFGLNYLGHFLLTNLLLDTLKESGSPGHSARVVTVSSATHYVAELNMD 194          
The following BLAST results are available for this feature:
BLAST of FC869120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
DHR12_BOVIN8.887e-3742.70Dehydrogenase/reductase SDR family member 12 OS=Bo... [more]
DHR12_HUMAN2.859e-3543.41Dehydrogenase/reductase SDR family member 12 OS=Ho... [more]
RDH12_MOUSE2.194e-2747.52Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 ... [more]
RDH11_HUMAN4.888e-2745.39Retinol dehydrogenase 11 OS=Homo sapiens GN=RDH11 ... [more]
RDH11_MOUSE2.426e-2640.94Retinol dehydrogenase 11 OS=Mus musculus GN=Rdh11 ... [more]
RDH12_HUMAN7.058e-2646.81Retinol dehydrogenase 12 OS=Homo sapiens GN=RDH12 ... [more]
RDH12_BOVIN2.054e-2546.38Retinol dehydrogenase 12 OS=Bos taurus GN=RDH12 PE... [more]
RDH13_MOUSE1.019e-2441.72Retinol dehydrogenase 13 OS=Mus musculus GN=Rdh13 ... [more]
RDH13_HUMAN1.738e-2440.26Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 ... [more]
DHRSX_HUMAN1.472e-2339.86Dehydrogenase/reductase SDR family member on chrom... [more]

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Properties
Property NameValue
Genbank descriptionC31008G03EF AbioticL1 Citrus clementina cDNA clone C31008G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869120 ID=FC869120; Name=FC869120; organism=Citrus clementina; type=EST; length=697bp
GGAAAACAGATTTCACCCACACTCCTCTCAATGTTCCTCCTCCAAGTACA
TCAAATTCACACCTTGAACATAGTAAAATATTTGCTATATTACCAACGAT
TAATTTCGTTTAACAGAATTTGATTTTTGTTTCAACAGAAATGGAGAGTT
GCAGCTTTTGGTGTGTATGGCTACATGAATTTCACAAAAAACGGCTTCAA
AGAACACTCCAAAAATTTCAAACCGGAAGATATGCAAGCTCGCATAGAAG
GGAAAAATTGCGTAGTTACAGGAGCAAATGCTGGCATTGGTTATGCTACC
GCTGAGGGTCTTGCTTCACGTGGGGCCACTGTCTATATGGTTTGTCGCAG
TAAAGAGAAAGGAGAAACTGCTCTTTCTGCAATTCGATCTAAGACAGGCA
ATGAAAATGTTCATCTGGAGCTGTGCGATCTTTCATCTATCACCGAGATC
AAGTCTTTTGCGAACAGGTTTTCATTAAAGGATAAGCCAGTTCATGTTTT
GGTTAACAATGCTGGCGTGCTTGAAAATAACCGATTAATCACATCTGAAG
GATTTGAGTTAAACTTTGCTGTAAATGTATTGGGCACATACACCATAACA
GAATTAATGGTTCCTTTGCTGGAGAAAGCTGCACCTGATGCTCGAGTGAT
CACAGTTTCCTCTGGAGGAATGTATACAGCTCACTTAACTGATGATC
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