FC869124

Overview
NameFC869124
Unique NameFC869124
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length641
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6274 contig Ccv1_Contig6274:135..776. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC869124 vs. ExPASy Swiss-Prot
Match: TGD2_ARATH (Protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic OS=Arabidopsis thaliana GN=TGD2 PE=1 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 7.784e-58
Identity = 114/166 (68.67%), Postives = 131/166 (78.92%), Query Frame = 1 
Query:   94 MVGNSLVQVSTCPAVLSSMIAQSRSSSNFLPCLPPKPKAKVTRIRALS-ADAGHDQPPSSSEGKNPLTAVMDVPRNIWRRTLRPLSDFGFGRRSVWEGGVGLFLVSGTVLLALSLAWLRGFQLRSKFRKYLAVFEFSQACGICTGTPVRIRGVTVGNVIRVYPSLK 588
            M+GN ++QV +     SSMIA  R S N +P LPPKP+ +   +RA S +DA H QP SS  GKNPLT V+DVPRNIWR+TL+PLSDFGFG+RS+WEGGVGLF+VSG  LLALS AWLRGFQ+RSKFRKY  VFE S A GICTGTPVRIRGVTVG +IRV PSLK
Sbjct:    1 MIGNPVIQVPSSLMPSSSMIACPRVSPNGVPYLPPKPRTRHLVVRAASNSDAAHGQP-SSDGGKNPLTVVLDVPRNIWRQTLKPLSDFGFGKRSIWEGGVGLFIVSGATLLALSWAWLRGFQMRSKFRKYQTVFELSHASGICTGTPVRIRGVTVGTIIRVNPSLK 165
The following BLAST results are available for this feature:
BLAST of FC869124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TGD2_ARATH7.784e-5868.67Protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplast... [more]
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Properties
Property NameValue
Genbank descriptionC31008G07EF AbioticL1 Citrus clementina cDNA clone C31008G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869124 ID=FC869124; Name=FC869124; organism=Citrus clementina; type=EST; length=641bp
TTGGGGGTTTGCTTGTTAAGGATAATACGATCTTAGAATTTGAGAGTAAA
CCCTACTTCAAGCAGCTACAGTTGAACCGGGATCGTGGAGAGGATGGTTG
GAAATTCGTTAGTCCAGGTTTCAACATGCCCCGCTGTGTTATCTTCGATG
ATTGCTCAATCTCGTAGTTCTTCAAATTTCTTGCCCTGTCTTCCGCCGAA
ACCAAAGGCAAAAGTTACCCGCATAAGAGCCTTGTCTGCTGATGCAGGAC
ATGACCAACCGCCGTCTTCTTCGGAAGGAAAGAATCCGCTCACTGCCGTT
ATGGATGTGCCTCGGAATATTTGGAGACGAACATTACGTCCGTTGAGCGA
TTTCGGGTTTGGTCGGAGGAGTGTGTGGGAAGGTGGGGTGGGATTGTTTC
TTGTATCGGGCACCGTTCTTCTTGCCCTCAGTTTGGCTTGGTTGAGGGGG
TTCCAGCTGCGGTCTAAATTCAGGAAGTACCTGGCTGTGTTTGAGTTTTC
GCAGGCTTGTGGTATATGTACAGGAACACCTGTGAGGATTAGAGGGGTGA
CTGTTGGCAATGTCATCCGTGTTTATCCTTCTCTTAAAGTATTGAAGCAG
TGGTCGAGGTTGAAGATGAAAAACAGTTATACCACAAAATG
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