FC869134

Overview
NameFC869134
Unique NameFC869134
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7178 contig Ccv1_Contig7178:372..1063. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869134 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.600e-22
Identity = 68/186 (36.56%), Postives = 104/186 (55.91%), Query Frame = 3
Query:  150 KFLSEPVPPHSDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNG-DDCKNK---KKLPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQ-RVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGF 692
            +FL   VP +++ ++ V + DV I++++ L  R+Y P +        D +N    + +P+I+ FHGG F  S A+  +Y  +  +L     A+ VSV  RRAPE+R P A+DDG+  L W+ S          ++WL    D + R+FL GDSSGGN+VH VA RA +   S + V G I ++P F
Sbjct:   47 EFLDRKVPANANPVNGVFSFDVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNS----------SSWLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVE---SRIDVLGNILLNPMF 219          
BLAST of FC869134 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.956e-20
Identity = 66/188 (35.11%), Postives = 97/188 (51.60%), Query Frame = 3
Query:  150 KFLSEPVPPHSDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNGDDCKNKKK------LPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQ-RVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGF 692
            ++L   V  +++ +D V + DV I++   L  R+Y P    +       + +K      +P+IL FHGG F  S A+  +Y  +  +L      + VSV  RRAPE+  P A+DDG+ AL W+ S S          WL    D +  +FL GDSSGGN+ H VA RAG+   S + V G I ++P F
Sbjct:   47 EYLDRKVTANANPVDGVFSFDVLIDRRINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNSRS----------WLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGE---SGIDVLGNILLNPMF 221          
BLAST of FC869134 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.268e-19
Identity = 68/202 (33.66%), Postives = 98/202 (48.51%), Query Frame = 3
Query:  108 DGSVDRTWTGPPEVKFLSEPVPPHSDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNGDDCKNKKK-------LPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQRVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGF 692
            DGS +R        +FL   VP +S  +D V + D  ++  + L  RIY P  +            K       +P+++ FHGG F  S A+  +Y     +L      + VSV  RR+PEHR P A+DDG+ AL W++S    Q+    N +         V+L GDSSGGN+ H VA RA +     ++V G I +HP F
Sbjct:   38 DGSFNRDLA-----EFLDRKVPANSFPLDGVFSFD-HVDSTTNLLTRIYQPASLLHQTRHGTLELTKPLSTTEIVPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRVWLQSGKDSNVY---------VYLAGDSSGGNIAHNVAVRATN---EGVKVLGNILLHPMF 221          
BLAST of FC869134 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.656e-19
Identity = 66/198 (33.33%), Postives = 93/198 (46.97%), Query Frame = 3
Query:  150 KFLSEPVPPHSDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNGD-----------------DCKNKKKLPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQRVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGF 692
            ++L   VP ++  ++ V++ D  I++  GL VRIY         GD                 D    +  P+I+ FHGG F  S A   +Y  +  +  K    + VSV  RRAPEHR P A+DDG+ AL W+ S    ++               RVFL GDSSGGN+ H VA RA D     ++V G I ++  F
Sbjct:   47 EYLDRRVPANARPLEGVSSFDHIIDQSVGLEVRIYRAAA----EGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMSQPFMRSGGDAQ---------ARVFLSGDSSGGNIAHHVAVRAAD---EGVKVCGNILLNAMF 228          
BLAST of FC869134 vs. ExPASy Swiss-Prot
Match: AAAD_RABIT (Arylacetamide deacetylase OS=Oryctolagus cuniculus GN=AADAC PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 51/161 (31.68%), Postives = 77/161 (47.83%), Query Frame = 3
Query:  147 VKFLS--EPVPPHSDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNGDDCKNKKKLPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQRVFLIGDSSGGNVVHEVA 623
            VKFL+  + VPP SD  ++V   + T N    + VR+Y P+          K+K     + + HGGG+CV  A    Y  +  + A  +  + VS   R APE+  P  F+D ++AL W     + +            VD +RV + GDS+GGN+   VA
Sbjct:   61 VKFLTSFQEVPPTSD--ENVTVTETTFNN---VPVRVYVPKR---------KSKTLRRGLFYIHGGGWCVGSAALSGYDLLSRRTADRLDVVVVSTNYRLAPEYHFPIQFEDVYDALKWFLRQDVLEKYG---------VDPERVGVSGDSAGGNLAAAVA 198          
The following BLAST results are available for this feature:
BLAST of FC869134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
GI1L3_ARATH1.600e-2236.56Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L1_ARATH1.956e-2035.11Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GI1L2_ARATH1.268e-1933.66Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GID1_ORYSJ1.656e-1933.33Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
AAAD_RABIT4.828e-1131.68Arylacetamide deacetylase OS=Oryctolagus cuniculus... [more]
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Properties
Property NameValue
Genbank descriptionC31008H05EF AbioticL1 Citrus clementina cDNA clone C31008H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869134 ID=FC869134; Name=FC869134; organism=Citrus clementina; type=EST; length=692bp
GAGAACATCCAAAATAATTATCACACCCAACACTCAACTAGGTAGCTATG
GTGAACGATGGAAGAGCAATAGTGGATGAAGTGTCCGGTTGGCTAAGAGT
CTACAGCGACGGTTCAGTTGATCGAACATGGACCGGACCACCGGAGGTCA
AGTTCTTGTCCGAACCGGTGCCACCCCACAGTGACTTTATTGACAGTGTC
GCCACCCACGACGTAACCATCAACAAAGAATCCGGCCTCCGTGTCCGAAT
TTATTCACCGGAGGAGATCAAGAAACTTAATGGTGATGATTGCAAGAACA
AGAAGAAGCTACCAATCATCCTTCACTTTCATGGGGGTGGTTTTTGCGTT
AGCCAAGCTGATTGGTACATGTACTATCACGTTTACACGAAGCTTGCAAA
ATCTGTCCCGGCTATCTGTGTCTCCGTCTATCTCCGGCGGGCCCCGGAGC
ACCGCCTCCCGGCCGCTTTCGACGATGGTTTCGAAGCCCTCCTTTGGCTC
CGGTCACTATCACTGGCTCAGGCTCAGGCTCGGGAGAATAATTGGCTGAC
TGAACATGTGGATTTTCAACGCGTCTTCCTCATTGGAGACAGCTCCGGAG
GGAACGTAGTGCATGAAGTGGCGGCACGTGCAGGTGACGCGGACTTGAGC
CCGTTGCGTGTGGCCGGAGCGATTCCGATTCATCCGGGTTTC
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