FC869145

Overview
NameFC869145
Unique NameFC869145
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig65 contig Ccv1_Contig65:60..744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RK5_ARATH (50S ribosomal protein L5, chloroplastic OS=Arabidopsis thaliana GN=RPL5 PE=1 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 8.765e-82
Identity = 155/207 (74.88%), Postives = 175/207 (84.54%), Query Frame = 1
Query:    4 PSLLHSSASSFHGRFPALSSSSYVRPTYPNPINVNGVVSVKAAAGGIVLVEKSEAEKTGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR 624
            PSLL SSASSFHGRF  L++ S  R   P   NV     VK +A G VLVEKSEAEKT RLKT YLE+I+P L+EEF Y NIHQVPK++KIVVNCGIGDAAQN KGLEAAM D+ALITGQ+P+KTRAR SIATFKIRE +PLGIAVTLRG++MYSFLDRLINL LPRTRDFQGV+P+SFDG+GNYSIGVK+Q VFPEIR+DA+GK R
Sbjct:    4 PSLLQSSASSFHGRFSPLAAPSSARMLSPPLRNV-----VKVSASGTVLVEKSEAEKTQRLKTAYLERIIPALKEEFKYVNIHQVPKVQKIVVNCGIGDAAQNDKGLEAAMKDIALITGQKPIKTRARASIATFKIREDQPLGIAVTLRGDVMYSFLDRLINLALPRTRDFQGVSPSSFDGNGNYSIGVKDQGVFPEIRFDAVGKTR 205          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RK5_SPIOL (50S ribosomal protein L5, chloroplastic OS=Spinacia oleracea GN=RPL5 PE=1 SV=2)

HSP 1 Score: 261.536 bits (667), Expect = 2.924e-69
Identity = 132/181 (72.93%), Postives = 154/181 (85.08%), Query Frame = 1
Query:  130 AAGGIVLVEKSEAEKTGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPRE*MFAL-HNRKTDKEA 669
            AAG  V V+K+EAE   RLKT Y+EK+VPLL+EEFSY+NI +VPK+ KIVVNCGIGDA+QNAKGL+AA+N+LALITGQRPVKT+A+ SIA FK+REG  LGIAVTLRGN+MYSFLDRLINL LPRTRDFQGVNPNSFDGHGNYS+G +EQSVFPEI+ + +GK R     +    KTDKEA
Sbjct:    1 AAGTAVFVDKAEAETINRLKTNYIEKMVPLLKEEFSYSNILEVPKVVKIVVNCGIGDASQNAKGLDAAINELALITGQRPVKTKAKTSIAGFKVREGMTLGIAVTLRGNLMYSFLDRLINLALPRTRDFQGVNPNSFDGHGNYSVGFREQSVFPEIKPEIVGKARGMDVCITTTAKTDKEA 181          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RK5_ORYSJ (50S ribosomal protein L5, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL5 PE=2 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 7.714e-62
Identity = 116/178 (65.17%), Postives = 144/178 (80.90%), Query Frame = 1
Query:  139 GIVLVEKSEAEKTGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR-E*MFALHNRKTDKEA 669
            GIVLV+ +EA+K  RLK  Y +K+VPL+ EEF YTN+HQVPK+EKIVVNCG+G  A N+KGLE+AM DLA+ITGQ PVKT+A+ S+A+FKIREG  +GIAVTLRG +M++FLDRLINLGLPRT DF GVNPNSFDGHGN++IG+++Q VFPEI Y+  GK     +  +   KTD EA
Sbjct:   63 GIVLVDPTEAQKVHRLKAVYDQKVVPLITEEFGYTNVHQVPKVEKIVVNCGLGAEAGNSKGLESAMKDLAMITGQWPVKTKAKKSVASFKIREGNTIGIAVTLRGRVMFNFLDRLINLGLPRTMDFLGVNPNSFDGHGNFTIGLRDQGVFPEIPYEVGGKKNGMDVCIVTTAKTDNEA 240          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_SYNY3 (50S ribosomal protein L5 OS=Synechocystis sp. (strain PCC 6803) GN=rplE PE=3 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 2.487e-52
Identity = 100/167 (59.88%), Postives = 130/167 (77.84%), Query Frame = 1
Query:  175 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR-E*MFALHNRKTDKEAR 672
            T RLKT Y E I+P L+EEF Y NIHQVPK+ K+ VN G+G+A+QNAK LE+++ +LA ITGQ+PV TRAR +IA FKIREG P+G+ VTLR   MY+FLDRLINL LPR RDF+G++PNSFDG GNYS+G++EQ +FPEI YD + + R   +  + + +TD+E R
Sbjct:    2 TQRLKTLYQETILPKLQEEFGYKNIHQVPKLTKVTVNRGLGEASQNAKALESSLTELATITGQKPVVTRARKAIAGFKIREGMPVGVMVTLRSERMYAFLDRLINLALPRIRDFRGISPNSFDGRGNYSLGIREQLIFPEIDYDTIDQIRGMDVSIITSAQTDEEGR 168          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_CYAP4 (50S ribosomal protein L5 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplE PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 9.451e-52
Identity = 96/148 (64.86%), Postives = 120/148 (81.08%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR 624
            RLKT YLE  VP L E+F Y NIHQVPK+ KI +N G+G+AAQNAK LEA++N++ALI GQ+PV TRA+ +IA FKIR+G P+GI VTLR + MY+F DRLINL LPR RDF+GVNP SFDG GNYS+G++EQ +FPEI YD++ + R
Sbjct:    4 RLKTYYLENAVPKLMEQFKYKNIHQVPKLVKITINRGLGEAAQNAKSLEASLNEIALIAGQKPVVTRAKKAIAGFKIRQGMPVGIMVTLRSDRMYAFFDRLINLALPRIRDFRGVNPKSFDGRGNYSLGLREQLIFPEISYDSIDQMR 151          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_MICAN (50S ribosomal protein L5 OS=Microcystis aeruginosa (strain NIES-843) GN=rplE PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.106e-51
Identity = 99/165 (60.00%), Postives = 129/165 (78.18%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR-E*MFALHNRKTDKEAR 672
            +LKTTY E IVP L+E+F YTNIHQVPK+ KI VN G+G+A+QNAK LE++  +L+ ITGQ+PV TRA+ +IA FKIREG P+G+ VTLRG+ MY+FLDRLINL LPR RDF+G++ NSFDG GNYS+G++EQ +FPEI YD + + R   +  +   K D+E R
Sbjct:    4 KLKTTYQETIVPKLKEQFGYTNIHQVPKVIKITVNRGLGEASQNAKALESSKAELSTITGQQPVVTRAKKAIAGFKIREGMPVGVMVTLRGDRMYAFLDRLINLALPRIRDFRGISGNSFDGRGNYSLGIREQLIFPEIEYDKIDQIRGMDISIITTAKNDEEGR 168          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_CYAP7 (50S ribosomal protein L5 OS=Cyanothece sp. (strain PCC 7424) GN=rplE PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.592e-51
Identity = 99/167 (59.28%), Postives = 130/167 (77.84%), Query Frame = 1
Query:  175 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR-E*MFALHNRKTDKEAR 672
            T RLKT Y E IVP L+E+F+YTNIHQVPK+ K+ VN G+GDA+QNAK LE+++ +LA ITGQ+PV TRAR +IA FKIR+G P+G+ VTLR   MY+FLDRLI+L LPR RDF+G++ NSFDG GNYS+G++EQ +FPEI YD + + R   +  +   +TD+E R
Sbjct:    2 TQRLKTVYYETIVPKLKEQFNYTNIHQVPKVIKVTVNRGLGDASQNAKALESSIAELATITGQKPVVTRARKAIAGFKIRKGMPVGVMVTLRSERMYAFLDRLISLALPRIRDFRGISGNSFDGRGNYSLGIREQLIFPEIDYDKIDQIRGMDISIITTAQTDEEGR 168          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_ANASP (50S ribosomal protein L5 OS=Anabaena sp. (strain PCC 7120) GN=rplE PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.691e-51
Identity = 98/167 (58.68%), Postives = 128/167 (76.65%), Query Frame = 1
Query:  175 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPRE-*MFALHNRKTDKEAR 672
            T RLKT Y E IVP L ++F YTN+HQVPK+ KI VN G+G+AAQNAK LEA++ ++A ITGQ+PV TRA+ +IA FKIR+G P+GI VTLRG  MY+F DRLI+L LPR RDF+G++P SFDG GNY++GV+EQ +FPEI YD++ + R   +  +   K D+E R
Sbjct:    3 TTRLKTLYQETIVPKLTQQFQYTNVHQVPKLVKITVNRGLGEAAQNAKSLEASLTEIATITGQKPVVTRAKKAIAGFKIRQGMPVGIMVTLRGERMYAFFDRLISLSLPRIRDFRGISPKSFDGRGNYTLGVREQLIFPEIEYDSIDQIRGLDISIITTAKNDEEGR 169          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_ANAVT (50S ribosomal protein L5 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplE PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.126e-51
Identity = 97/167 (58.08%), Postives = 128/167 (76.65%), Query Frame = 1
Query:  175 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPRE-*MFALHNRKTDKEAR 672
            T RLKT Y E I+P L ++F YTN+HQVPK+ KI VN G+G+AAQNAK LEA++ ++A ITGQ+PV TRA+ +IA FKIR+G P+GI VTLRG  MY+F DRLI+L LPR RDF+G++P SFDG GNY++GV+EQ +FPEI YD++ + R   +  +   K D+E R
Sbjct:    3 TTRLKTLYQETIIPKLTQQFQYTNVHQVPKLVKITVNRGLGEAAQNAKSLEASLTEIATITGQKPVVTRAKKAIAGFKIRQGMPVGIMVTLRGERMYAFFDRLISLSLPRIRDFRGISPKSFDGRGNYTLGVREQLIFPEIEYDSIDQIRGLDISIITTAKNDEEGR 169          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_SYNWW (50S ribosomal protein L5 OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=rplE PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.365e-50
Identity = 98/166 (59.04%), Postives = 126/166 (75.90%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPRE-*MFALHNRKTDKEARD 675
            RL  TY + IVP + E+F Y NI QVPK+E++VVN G+G+A QN K L+ A+NDL++I+GQ+PV TRAR SIA FK+REG  +G  VTLRG  MY FLDRLINL LPR RDF+GV+P +FDG GNYS+G+KEQ++FPEI YD + K R   +  +   KTD+EAR+
Sbjct:    3 RLYETYKKDIVPKMMEKFQYDNIMQVPKVERVVVNIGVGEAIQNPKALDGAVNDLSIISGQKPVITRARKSIAGFKLREGMAIGCKVTLRGERMYDFLDRLINLALPRVRDFRGVSPQAFDGRGNYSLGIKEQTIFPEIDYDKIDKIRGLEVVVVTTAKTDEEARE 168          
The following BLAST results are available for this feature:
BLAST of FC869145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK5_ARATH8.765e-8274.8850S ribosomal protein L5, chloroplastic OS=Arabido... [more]
RK5_SPIOL2.924e-6972.9350S ribosomal protein L5, chloroplastic OS=Spinaci... [more]
RK5_ORYSJ7.714e-6265.1750S ribosomal protein L5, chloroplastic OS=Oryza s... [more]
RL5_SYNY32.487e-5259.8850S ribosomal protein L5 OS=Synechocystis sp. (str... [more]
RL5_CYAP49.451e-5264.8650S ribosomal protein L5 OS=Cyanothece sp. (strain... [more]
RL5_MICAN2.106e-5160.0050S ribosomal protein L5 OS=Microcystis aeruginosa... [more]
RL5_CYAP73.592e-5159.2850S ribosomal protein L5 OS=Cyanothece sp. (strain... [more]
RL5_ANASP4.691e-5158.6850S ribosomal protein L5 OS=Anabaena sp. (strain P... [more]
RL5_ANAVT6.126e-5158.0850S ribosomal protein L5 OS=Anabaena variabilis (s... [more]
RL5_SYNWW1.365e-5059.0450S ribosomal protein L5 OS=Syntrophomonas wolfei ... [more]

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Properties
Property NameValue
Genbank descriptionC31009A05EF AbioticL1 Citrus clementina cDNA clone C31009A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869145 ID=FC869145; Name=FC869145; organism=Citrus clementina; type=EST; length=685bp
TGTCCTTCGCTGTTACACTCCTCTGCGTCGTCGTTTCACGGCCGATTCCC
CGCTCTCTCATCTTCATCATATGTACGGCCCACATATCCAAACCCTATAA
ATGTGAATGGGGTGGTCTCGGTGAAGGCGGCGGCTGGAGGCATTGTGTTG
GTGGAGAAATCCGAAGCAGAGAAGACCGGACGGCTCAAAACCACGTATCT
CGAAAAGATTGTTCCTTTGCTCAGAGAAGAGTTTTCCTATACTAACATTC
ACCAGGTTCCGAAGATTGAGAAGATTGTTGTGAATTGTGGTATTGGAGAT
GCTGCTCAGAATGCAAAAGGCCTGGAGGCGGCAATGAATGACTTGGCACT
CATTACAGGTCAGAGACCTGTAAAGACGCGAGCAAGGAATTCCATTGCCA
CCTTCAAGATCAGGGAAGGCGAACCACTTGGAATTGCTGTCACACTCAGA
GGAAATATGATGTACTCATTTCTAGACCGTCTTATTAATTTGGGGCTTCC
TAGAACAAGGGATTTCCAAGGTGTGAATCCCAATAGCTTTGATGGACATG
GGAATTACAGCATTGGTGTTAAAGAACAGAGTGTTTTCCCGGAGATCAGG
TATGATGCTCTTGGCAAGCCCAGGGAATAGATGTTTGCATTACACAACCG
CAAAACTGATAAAGAAGCCAGAGACTTTTGGCTCT
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