FC869147

Overview
NameFC869147
Unique NameFC869147
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9463 contig Ccv1_Contig9463:1..674. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869147 vs. ExPASy Swiss-Prot
Match: RPE_SPIOL (Ribulose-phosphate 3-epimerase, chloroplastic OS=Spinacia oleracea GN=RPE PE=1 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 6.937e-76
Identity = 145/176 (82.39%), Postives = 159/176 (90.34%), Query Frame = 3
Query:  123 MSTGSLCSST--TQINGFTGGFMLQKT--NLNQPSSLSFTRGRIHTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL 638
            MS  SLC ST  +QINGF GG  ++K   + + P+SL+FTR ++ T+VKA++RVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCE +STIHLHRT+NQIK LGAKAGVVL
Sbjct:    1 MSAASLCQSTLQSQINGFCGGLNIRKLQPSTSSPNSLTFTRRKVQTLVKATSRVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCELASTIHLHRTVNQIKSLGAKAGVVL 176          
BLAST of FC869147 vs. ExPASy Swiss-Prot
Match: RPE_SOLTU (Ribulose-phosphate 3-epimerase, chloroplastic (Fragment) OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.914e-74
Identity = 139/171 (81.29%), Postives = 153/171 (89.47%), Query Frame = 3
Query:  126 STGSLCSSTTQINGFTGGFMLQKTNLNQPSSLSFTRGRIHTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL 638
            S GS     +QI+GF G   LQK + + P+SL+FTR RI T+V AS+RVDKFSKSDIIVSPSILSANF+KLGEQVKA+E AGCDWIHVDVMDGRFVPNITIGPLVVD+LRP+TDLPLDVHLMIVEP+QRVPDFIKAGADIVSVHCEQSSTIHLHRT+NQIK LGAKAGVVL
Sbjct:    1 SLGSSTLLQSQISGFGGSQKLQKISFSNPNSLTFTRRRIQTVVNASSRVDKFSKSDIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVL 171          
BLAST of FC869147 vs. ExPASy Swiss-Prot
Match: RPE_ORYSJ (Ribulose-phosphate 3-epimerase, chloroplastic OS=Oryza sativa subsp. japonica GN=RPE PE=1 SV=2)

HSP 1 Score: 248.054 bits (632), Expect = 3.230e-65
Identity = 125/140 (89.29%), Postives = 133/140 (95.00%), Query Frame = 3
Query:  219 LSFTRGRIHTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL 638
            L+F+  R    V+AS+RVDKFSK+DIIVSPSILSANF+KLGEQVKAVE+AGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRT+NQIK LGAKAGVVL
Sbjct:   26 LAFSSPRKAFRVRASSRVDKFSKNDIIVSPSILSANFSKLGEQVKAVEVAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVL 165          
BLAST of FC869147 vs. ExPASy Swiss-Prot
Match: RPE_SYNY3 (Ribulose-phosphate 3-epimerase OS=Synechocystis sp. (strain PCC 6803) GN=rpe PE=1 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 5.927e-43
Identity = 83/116 (71.55%), Postives = 102/116 (87.93%), Query Frame = 3
Query:  291 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL 638
            +I+V+PSILSA+F++LGE++KAV+ AG DWIHVDVMDGRFVPNITIGPL+VDA+RP+T   LDVHLMIVEPE+ V DF KAGADI+SVH E +++ HLHRTL QI++LG KAG VL
Sbjct:    4 NIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVL 119          
BLAST of FC869147 vs. ExPASy Swiss-Prot
Match: RPE_BACSU (Ribulose-phosphate 3-epimerase OS=Bacillus subtilis GN=rpe PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.849e-37
Identity = 78/115 (67.83%), Postives = 93/115 (80.87%), Query Frame = 3
Query:  294 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL 638
            I V+PSILSA+FA LG ++K VE  G D IH+DVMDG FVPNITIGPL+V+A+RPVTDLPLDVHLMI EP++ +P F KAGADI+SVH E  +  HLHRT+  IK+ G KAGVVL
Sbjct:    2 IKVAPSILSADFAALGNEIKDVEKGGADCIHIDVMDGHFVPNITIGPLIVEAVRPVTDLPLDVHLMIEEPDRYIPAFAKAGADILSVHAE--ACPHLHRTIQLIKEQGVKAGVVL 114          
BLAST of FC869147 vs. ExPASy Swiss-Prot
Match: RPEC_RALEH (Ribulose-phosphate 3-epimerase, chromosomal OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbEC PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.362e-29
Identity = 63/119 (52.94%), Postives = 87/119 (73.11%), Query Frame = 3
Query:  282 SKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL 638
            S+  I ++PSILSA+FA+LGE+V A+E  G D +H DVMD  +VPN+TIGPLV +A+RP+  +P+DVHLM+   +  +P F KAGA+I+S H E S   H+ RT+  I+D G KAG+VL
Sbjct:   12 SQRAIRLAPSILSADFARLGEEVCAIEAGGADLVHFDVMDNHYVPNLTIGPLVCEAIRPLVSIPIDVHLMVEPVDALIPLFAKAGANIISFHPEASR--HVDRTIGLIRDHGCKAGLVL 128          
BLAST of FC869147 vs. ExPASy Swiss-Prot
Match: RPEP_RALEH (Ribulose-phosphate 3-epimerase, plasmid OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbEP PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.034e-28
Identity = 61/119 (51.26%), Postives = 86/119 (72.27%), Query Frame = 3
Query:  282 SKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL 638
            S+  I ++PSILSA+FA+LGE+V A+E  G D +H DVMD  +V N+TIGPLV +A+RP+  +P+DVHLM+   +  +P F KAGA+++S H E S   H+ RT+  I+D G KAG+VL
Sbjct:   12 SQRAIRLAPSILSADFARLGEEVCAIEAGGADLVHFDVMDNHYVSNLTIGPLVCEAIRPLVSIPIDVHLMVEPVDALIPMFAKAGANLISFHPEASR--HVDRTIGLIRDHGCKAGLVL 128          
BLAST of FC869147 vs. ExPASy Swiss-Prot
Match: RPE_AQUAE (Ribulose-phosphate 3-epimerase OS=Aquifex aeolicus GN=rpe PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.502e-25
Identity = 56/114 (49.12%), Postives = 81/114 (71.05%), Query Frame = 3
Query:  297 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL 638
            +++PSIL+ ++  +GEQ++A    G D +H DVMDG FVPNIT G  ++  +R    LP+D HLMI  P++ +P F++AGA+ +SVH E  +  H+HRTL  IK+LGAKAGVV+
Sbjct:    3 LLAPSILAGDWWCIGEQIQATIRGGADILHYDVMDGHFVPNITAGYEILSHIRKRASLPIDAHLMIENPDKYIPKFVEAGANWISVHIE--NNYHIHRTLQLIKELGAKAGVVV 114          
BLAST of FC869147 vs. ExPASy Swiss-Prot
Match: RPE_BUCAP (Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=rpe PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.267e-25
Identity = 58/114 (50.88%), Postives = 79/114 (69.30%), Query Frame = 3
Query:  300 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL 638
            ++ SILSA+FA+LGE  K    AG DWIH DVMD  +VPN+T+GP+++ ALR     +P+DVHLM+   +  +P F +AGAD ++ H E  ST H+ RTLN IK+ G KAG+ L
Sbjct:    6 LASSILSADFARLGEDTKKAIDAGSDWIHFDVMDNHYVPNLTMGPMILKALRNYNITVPIDVHLMVKPVDNLIPQFAEAGADFITFHPE--STDHIDRTLNLIKECGCKAGLAL 117          
BLAST of FC869147 vs. ExPASy Swiss-Prot
Match: RPE_RHOCA (Ribulose-phosphate 3-epimerase OS=Rhodobacter capsulatus GN=cbbE PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.622e-24
Identity = 54/115 (46.96%), Postives = 75/115 (65.22%), Query Frame = 3
Query:  294 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL 638
            I ++PSILSA+FA  G +++A+E  G DW+HVDVMDG FVPN+T GP  V A R      +DVHLMI   +  +  + +AGAD+++ H E     H+HRTL  I+  G K+GV +
Sbjct:    7 IKIAPSILSADFADFGREIQAIEAQGADWVHVDVMDGHFVPNLTFGPPAVAAFRKHVKTVMDVHLMISPVDAYIDAYAQAGADVLTAHVEAGP--HIHRTLQAIRAAGMKSGVAI 119          
The following BLAST results are available for this feature:
BLAST of FC869147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RPE_SPIOL6.937e-7682.39Ribulose-phosphate 3-epimerase, chloroplastic OS=S... [more]
RPE_SOLTU2.914e-7481.29Ribulose-phosphate 3-epimerase, chloroplastic (Fra... [more]
RPE_ORYSJ3.230e-6589.29Ribulose-phosphate 3-epimerase, chloroplastic OS=O... [more]
RPE_SYNY35.927e-4371.55Ribulose-phosphate 3-epimerase OS=Synechocystis sp... [more]
RPE_BACSU2.849e-3767.83Ribulose-phosphate 3-epimerase OS=Bacillus subtili... [more]
RPEC_RALEH6.362e-2952.94Ribulose-phosphate 3-epimerase, chromosomal OS=Ral... [more]
RPEP_RALEH7.034e-2851.26Ribulose-phosphate 3-epimerase, plasmid OS=Ralston... [more]
RPE_AQUAE2.502e-2549.12Ribulose-phosphate 3-epimerase OS=Aquifex aeolicus... [more]
RPE_BUCAP3.267e-2550.88Ribulose-phosphate 3-epimerase OS=Buchnera aphidic... [more]
RPE_RHOCA1.622e-2446.96Ribulose-phosphate 3-epimerase OS=Rhodobacter caps... [more]

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Properties
Property NameValue
Genbank descriptionC31009A07EF AbioticL1 Citrus clementina cDNA clone C31009A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869147 ID=FC869147; Name=FC869147; organism=Citrus clementina; type=EST; length=674bp
GAGACTTGCCGCTGAAATTCGTCTAGAGAAAACGAACGAAAACAGATACC
ATATTTCCTCTCACTAGCCATAACCAAACCAACAGTTACGTTTTAGAGAG
AGAAACAAAAAAAAGCGTCAAGATGTCTACAGGCTCGCTGTGTTCATCAA
CGACTCAGATCAATGGCTTTACAGGTGGTTTCATGTTGCAGAAAACCAAT
CTTAATCAGCCCAGTTCACTTAGTTTTACAAGGGGGAGAATTCATACTAT
AGTGAAGGCATCAGCTCGTGTGGATAAGTTCTCGAAAAGTGATATTATTG
TTTCTCCATCTATTCTCTCTGCTAATTTCGCGAAGTTAGGCGAGCAGGTA
AAAGCAGTGGAATTGGCTGGTTGTGATTGGATTCATGTTGATGTCATGGA
TGGTCGTTTTGTTCCAAACATTACAATTGGACCTCTTGTGGTTGATGCCT
TGCGCCCTGTGACAGACCTTCCTTTGGATGTTCATTTGATGATTGTCGAA
CCTGAACAACGAGTGCCTGATTTTATCAAGGCTGGAGCAGACATAGTCAG
CGTCCACTGTGAGCAATCATCCACCATTCATTTGCACCGCACTCTTAACC
AAATAAAAGATTTGGGAGCTAAAGCTGGAGTTGTCCTTACCCTGCTACTC
ACTGAGTGCAATAGATGTGTCCTT
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