FC869158

Overview
NameFC869158
Unique NameFC869158
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5789 contig Ccv1_Contig5789:23..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869158 vs. ExPASy Swiss-Prot
Match: SIP12_MAIZE (Aquaporin SIP1-2 OS=Zea mays GN=SIP1-2 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.757e-61
Identity = 121/224 (54.02%), Postives = 151/224 (67.41%), Query Frame = 3
Query:   27 AMGP-VKAAAGDLVLTFMWVFVSSTFGVLTTEIASALGVHGLVWPPMLITTAXXXXXXXXXXXXGEALGGASFNPTGTAAFYAVGVGSDSLLSMALRFPXXXXXXXXXXXXIMEYMPPKYKHMLGGPSLQVDLHTGAIAEGLLTFLITFAVLVIMLKGPQSNILKTWXXXXXXXXXXXXGSAYTGPSMNPANAFGWAYVNKWHDTWDQFYVYWICPFIXAVVAS 695
            AMG  ++AAA D V+TF+WV   ST G  TT + S L + G+ +  +L+T +             +ALGGASFNPTG AAFYA GV S SL S+ALR P            I E MP +Y+HMLGGPSL+VD HTGA AE +LTF+IT AVL+I++KGP++ I+KTW            G+AYTGPSMNPANAFGWAYVN  H+TW+QFYVYWICPFI A++A+
Sbjct:    2 AMGEALRAAAADAVVTFLWVLCVSTLGASTTAVTSYLRLQGVHFA-LLVTVSLLSVLLFVFNILCDALGGASFNPTGVAAFYAAGVTSPSLFSIALRLPAQAAGAVGGALAISELMPAQYRHMLGGPSLKVDPHTGAGAELVLTFVITLAVLLIIVKGPRNPIIKTWMISICTLCLVLSGAAYTGPSMNPANAFGWAYVNNRHNTWEQFYVYWICPFIGAILAA 224          
BLAST of FC869158 vs. ExPASy Swiss-Prot
Match: SIP11_ORYSJ (Aquaporin SIP1-1 OS=Oryza sativa subsp. japonica GN=SIP1-1 PE=2 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.274e-59
Identity = 117/226 (51.77%), Postives = 146/226 (64.60%), Query Frame = 3
Query:   27 AMGPVKAAAGDLVLTFMWVFVSSTFGVLTTEIASALGVHGLVWPPMLITTAXXXXXXXXXXXXGEALGGASFNPTGTAAFYAVGVGS---DSLLSMALRFPXXXXXXXXXXXXIMEYMPPKYKHMLGGPSLQVDLHTGAIAEGLLTFLITFAVLVIMLKGPQSNILKTWXXXXXXXXXXXXGSAYTGPSMNPANAFGWAYVNKWHDTWDQFYVYWICPFIXAVVAS 695
            A+  V+AAA D  +TF+WV   ST G  T  + S L +H  +   +L+T +             +ALGGASFNPT  AAF+A G+ S    SL  +ALRFP            I E MP +YKHMLGGPSL+VDLHTGA AE +LTF+IT AVL I++KGP++ I+KTW            G+AYTGPSMNPANAFGWAYVN  H+TW+QFYVYWICPF+ AV+A+
Sbjct:    2 AVAAVRAAAADAAVTFLWVLCVSTLGASTAAVTSYLRIHEGIHYALLVTVSLLSVLLFAFNLLCDALGGASFNPTALAAFHAAGLSSPRHSSLFPLALRFPAQAAGAVGGAMAISELMPEQYKHMLGGPSLKVDLHTGAAAELVLTFVITLAVLWIIVKGPRNPIVKTWMLSISTVCLVLTGAAYTGPSMNPANAFGWAYVNNRHNTWEQFYVYWICPFVGAVLAA 227          
BLAST of FC869158 vs. ExPASy Swiss-Prot
Match: SIP11_MAIZE (Aquaporin SIP1-1 OS=Zea mays GN=SIP1-1 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 9.133e-58
Identity = 118/224 (52.68%), Postives = 143/224 (63.84%), Query Frame = 3
Query:   27 AMGP-VKAAAGDLVLTFMWVFVSSTFGVLTTEIASALGVH-GLVWPPMLITTAXXXXXXXXXXXXGEALGGASFNPTGTAAFYAVGVGSDSLLSMALRFPXXXXXXXXXXXXIMEYMPPKYKHMLGGPSLQVDLHTGAIAEGLLTFLITFAVLVIMLKGPQSNILKTWXXXXXXXXXXXXGSAYTGPSMNPANAFGWAYVNKWHDTWDQFYVYWICPFIXAVVA 692
            AMG  V+AAA D V+TF+WV  +S  G  T  + S LGV  G     +L+TT+              ALGGASFNPT  AA YA G+ S SL S+ALRFP            I E MP +YKH L GPSL+VD HTGA+AEG+LTF+IT  VL +++KGP++ ILKT             G+ YTGPSMNPANAFGWAYVN WH+TW+Q YVYWICPFI A++A
Sbjct:    2 AMGATVRAAAADAVVTFLWVLCASALGASTAAVTSYLGVQEGAGHYALLVTTSLLSVLLFTFDLLCGALGGASFNPTDFAASYAAGLDSPSLFSVALRFPAQAAGAVGGALAISELMPAQYKHTLAGPSLKVDPHTGALAEGVLTFVITLTVLWVIVKGPRNVILKTLLLSTSIVSVILAGAEYTGPSMNPANAFGWAYVNNWHNTWEQLYVYWICPFIGAMLA 225          
BLAST of FC869158 vs. ExPASy Swiss-Prot
Match: SIP11_ARATH (Aquaporin SIP1-1 OS=Arabidopsis thaliana GN=SIP1-1 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.837e-56
Identity = 108/223 (48.43%), Postives = 143/223 (64.13%), Query Frame = 3
Query:   30 MGPVKAAAGDLVLTFMWVFVSSTFGVLTTEIASALGVHGLVWPPMLITTAXXXXXXXXXXXXGEALGGASFNPTGTAAFYAVGVGSDSLLSMALRFPXXXXXXXXXXXXIMEYMPPKYKHMLGGPSLQVDLHTGAIAEGLLTFLITFAVLVIMLKGPQSNILKTWXXXXXXXXXXXXGSAYTGPSMNPANAFGWAYVNKWHDTWDQFYVYWICPFIXAVVASM 698
            MG +K+A GD+++TF WV +S+TFG+ T  I SA     + W P++I T+                G ASFNPTG+AAFY  GV  D+L S+A+R P            IME++P KYKHM+GGPSLQVD+HTGAIAE +L+F ITFAVL+I+L+GP+  + KT+            GS YTGP+MNPA AFGWAY+   H+TWD  YVYWI  F+ A+ A++
Sbjct:    2 MGVLKSAIGDMLMTFSWVVLSATFGIQTAAIISAGDFQAITWAPLVILTSLIFVYVSIFTVI---FGSASFNPTGSAAFYVAGVPGDTLFSLAIRLPAQAIGAAGGALAIMEFIPEKYKHMIGGPSLQVDVHTGAIAETILSFGITFAVLLIILRGPRRLLAKTFLLALATISFVVAGSKYTGPAMNPAIAFGWAYMYSSHNTWDHIYVYWISSFVGALSAAL 221          
BLAST of FC869158 vs. ExPASy Swiss-Prot
Match: SIP12_ARATH (Probable aquaporin SIP1-2 OS=Arabidopsis thaliana GN=SIP1-2 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.011e-56
Identity = 107/224 (47.77%), Postives = 141/224 (62.95%), Query Frame = 3
Query:   30 MGPVKAAAGDLVLTFMWVFVSSTFGVLTTEIASALGVHGLVWPPMLITTAXXXXXXXXXXXXGEALGGASFNPTGTAAFYAVGVGSDSLLSMALRFPXXXXXXXXXXXXIMEYMPPKYKHMLGG-PSLQVDLHTGAIAEGLLTFLITFAVLVIMLKGPQSNILKTWXXXXXXXXXXXXGSAYTGPSMNPANAFGWAYVNKWHDTWDQFYVYWICPFIXAVVASM 698
            M  VK+A GD+V+TF+WV +S+TFG+ T  I SA+G HG+ W P++I+T             G  LGGASFNP G AAFY  GV SDSL S+A+R P            IME +P KYK  +GG PSLQ   H GAI+E +L+F +TF VL+I+L+GP+  + KT+            GS +T P MNPA AFGWAY+ K H+TWD FYVYWI  +  A++++M
Sbjct:    1 MSAVKSALGDMVITFLWVILSATFGIQTAAIVSAVGFHGITWAPLVISTLVVFVSISIFTVIGNVLGGASFNPCGNAAFYTAGVSSDSLFSLAIRSPAQAIGAAGGAITIMEMIPEKYKTRIGGKPSLQFGAHNGAISEVVLSFSVTFLVLLIILRGPRKLLAKTFLLALATVSVFVVGSKFTRPFMNPAIAFGWAYIYKSHNTWDHFYVYWISSYTGAILSAM 224          
BLAST of FC869158 vs. ExPASy Swiss-Prot
Match: SIP21_ARATH (Probable aquaporin SIP2-1 OS=Arabidopsis thaliana GN=SIP2-1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.688e-17
Identity = 63/221 (28.51%), Postives = 87/221 (39.37%), Query Frame = 3
Query:   30 MGPVKAAAGDLVLTFMWVFVSSTFGVLTTEIASALGVHGLVWPPMLITTAXXXXXXXXXXXXGEALGGASFNPTGTAAFYAVGVGSDSLLSMALRFPXXXXXXXXXXXXIMEYMPPKYKHMLGGPSLQVDLHTGAIAEGLLTFLITFAVLVIMLKGPQSNILKTWXXXXXXXXXXXXGSAYTGPSMNPANAFGWAYVNKWHDTWDQFYVYWICPFIXAVVA 692
            MG +     DLVL+FMW++      +L   +   LG         ++                +A  G  +NP    A    G  S  + S+ +R P            I+   P   K    GP L V +H GA+ EG+LTF I    + +  K P S  +KTW            GS  TG  MNPA   GWAY    H T +   VYW+ P    ++A
Sbjct:    1 MGRIGLVVTDLVLSFMWIWAGVLVNIL---VHGVLGFSRTDPSGEIVRYLFSIISMFIFAYLQQATKGGLYNPLTALAAGVSGGFSSFIFSVFVRIPVEVIGSILAVKHIIHVFPEIGK----GPKLNVAIHHGALTEGILTFFIVLLSMGLTRKIPGSFFMKTWIGSLAKLTLHILGSDLTGGCMNPAAVMGWAYARGEHITKEHLLVYWLGPVKATLLA 214          
BLAST of FC869158 vs. ExPASy Swiss-Prot
Match: SIP21_ORYSJ (Aquaporin SIP2-1 OS=Oryza sativa subsp. japonica GN=SIP2-1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.292e-15
Identity = 63/210 (30.00%), Postives = 82/210 (39.05%), Query Frame = 3
Query:   54 GDLVLTFMWVFVSSTFGVLTTEIASALGVHGLVWPPML--ITTAXXXXXXXXXXXXGEALGGASFNPTGTAAFYAVGVGSDSLLSMA--LRFPXXXXXXXXXXXXIMEYMPPKYKHMLGGPSLQVDLHTGAIAEGLLTFLITFAVLVIMLKGPQSNILKTWXXXXXXXXXXXXGSAYTGPSMNPANAFGWAYVNKWHDTWDQFYVYWICP 671
            GDLV+  MWV   +   +      +  GV GL   P    +  A                GGAS+NP    A         SL   A  +R P            I   +P   K    G  L V +H GA+AEGL TF++    + +  K  +   +KTW             S  TG  MNPA+AF WAY    H T+D   VYW+ P
Sbjct:   19 GDLVVAAMWVCAGALVKL------AVYGVLGLGGRPEADAVKVALSLVYMFFFAWLEGFTGGASYNPLTVLAGALASRAGPSLYLFAAFVRMPAQVFGSILGVKLIRAALPKVGK----GAPLSVGVHHGALAEGLATFMVVIVSVTLKKKEMKGFFMKTWISSIWKMTFHLLSSDITGGVMNPASAFAWAYARGDHTTFDHLLVYWLAP 218          
BLAST of FC869158 vs. ExPASy Swiss-Prot
Match: SIP21_MAIZE (Aquaporin SIP2-1 OS=Zea mays GN=SIP2-1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.631e-14
Identity = 61/208 (29.33%), Postives = 80/208 (38.46%), Query Frame = 3
Query:   54 GDLVLTFMWVFVSSTFGVLTTEIASALGVHGLVWPPMLITTAXXXXXXXXXXXXGEALGGASFNPTGTAAFYAVGVGSDS--LLSMALRFPXXXXXXXXXXXXIMEYMPPKYKHMLGGPSLQVDLHTGAIAEGLLTFLITFAVLVIMLKGPQSNILKTWXXXXXXXXXXXXGSAYTGPSMNPANAFGWAYVNKWHDTWDQFYVYWICP 671
            GDL L   WV   +   +L   +   LG+ G       +  +              A GGAS+NP    A      G  +  L +   R P            I    P   K    G  L V  H GA+AEGL TF++    + +  K  +S  +KTW             S  TG  MNPA+AF WAY    H T+D   VYW+ P
Sbjct:   17 GDLALAAAWVCAGALVKLL---VYGGLGLGGRP-EAEAVKVSLSLVYMFLFAWLEAASGGASYNPLTVLAAALASHGGPAVYLFTAFARIPAQVIGAVLGVKLIQVTFPNVGK----GARLSVGAHHGALAEGLATFMVVMVSVTLKKKEMKSFFMKTWITSIWKNTIHLLSSDITGGIMNPASAFAWAYARGDHTTFDHLLVYWLAP 216          
The following BLAST results are available for this feature:
BLAST of FC869158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SIP12_MAIZE6.757e-6154.02Aquaporin SIP1-2 OS=Zea mays GN=SIP1-2 PE=2 SV=1[more]
SIP11_ORYSJ1.274e-5951.77Aquaporin SIP1-1 OS=Oryza sativa subsp. japonica G... [more]
SIP11_MAIZE9.133e-5852.68Aquaporin SIP1-1 OS=Zea mays GN=SIP1-1 PE=2 SV=1[more]
SIP11_ARATH3.837e-5648.43Aquaporin SIP1-1 OS=Arabidopsis thaliana GN=SIP1-1... [more]
SIP12_ARATH5.011e-5647.77Probable aquaporin SIP1-2 OS=Arabidopsis thaliana ... [more]
SIP21_ARATH2.688e-1728.51Probable aquaporin SIP2-1 OS=Arabidopsis thaliana ... [more]
SIP21_ORYSJ4.292e-1530.00Aquaporin SIP2-1 OS=Oryza sativa subsp. japonica G... [more]
SIP21_MAIZE1.631e-1429.33Aquaporin SIP2-1 OS=Zea mays GN=SIP2-1 PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC31009B06EF AbioticL1 Citrus clementina cDNA clone C31009B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869158 ID=FC869158; Name=FC869158; organism=Citrus clementina; type=EST; length=699bp
TTTTTTTCATTTTTTCCCCTTTTTCAGCGATGGGTCCGGTAAAGGCAGCA
GCGGGCGATCTGGTGCTGACGTTTATGTGGGTATTTGTGTCGTCAACCTT
CGGTGTTTTGACGACTGAGATTGCCTCCGCCCTTGGCGTTCACGGCCTTG
TTTGGCCGCCCATGCTCATCACTACGGCCATTGTTTTTGTTTTCGTTTTT
ATTTTTAATATCATCGGTGAAGCTCTTGGTGGAGCCAGTTTCAATCCCAC
TGGTACCGCTGCGTTTTACGCTGTCGGTGTCGGCTCCGATAGCCTCCTCT
CCATGGCCCTCCGCTTCCCAGCCCAGGCAGCGGGTGCCGTGGGCGGTGCA
TTGGCCATCATGGAGTACATGCCACCAAAGTACAAGCACATGCTTGGGGG
TCCTTCTTTGCAAGTTGACTTGCATACCGGAGCCATTGCTGAGGGGCTGT
TGACTTTCCTTATTACCTTTGCTGTTCTTGTAATTATGCTCAAGGGTCCT
CAAAGCAATATTTTGAAGACCTGGTTGGTTGCTGTGGCAACTGTCGTCTT
GATTGTTACAGGTTCCGCTTATACTGGACCTTCCATGAATCCTGCCAATG
CCTTTGGCTGGGCATATGTGAACAAGTGGCATGACACATGGGATCAGTTT
TACGTATACTGGATTTGTCCATTCATAGNAGCAGTTGTGGCTTCTATGA
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