FC869171

Overview
NameFC869171
Unique NameFC869171
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9469 contig Ccv1_Contig9469:1..679. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869171 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.825e-23
Identity = 62/149 (41.61%), Postives = 94/149 (63.09%), Query Frame = 1
Query:  232 KKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGV 678
            ++ A  VS  G+ D     RT++QMM+TM+R+ ED     +T+P  + R   G    R PW I++ EN+ K+R D+PG+S+ +VKV VE+ +LVIK E  ++ E+  D S       W  N Y SY TR++LPDNV+ +K++AE+K+GV
Sbjct:   89 RRMALDVSPFGLLDPMSPMRTMRQMMDTMDRLFEDT----MTFPGSRNR---GTGEIRAPWDIKDDENEIKMRFDMPGLSKEEVKVSVEDDVLVIKGEH-KKEESGKDDS-------WGRN-YSSYDTRLSLPDNVDKDKVKAELKNGV 221          
BLAST of FC869171 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.825e-23
Identity = 62/148 (41.89%), Postives = 89/148 (60.14%), Query Frame = 1
Query:  235 KRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGV 678
            + A  VS  G+ D     RT++QM++TM+R+ ED     +T+P +     SG    RTPW I + EN+ K+R D+PG+S+ DVKV VE  MLVIK E  +  +         ++  W  N Y SY TR++LPDNV  +KI+AE+K+GV
Sbjct:   82 RMALDVSPFGVLDPMSPMRTMRQMIDTMDRLFEDT----MTFPGRNRA--SGTGEIRTPWDIHDDENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDG-------RDKHSWGRN-YSSYDTRLSLPDNVVKDKIKAELKNGV 215          
BLAST of FC869171 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.936e-23
Identity = 59/151 (39.07%), Postives = 90/151 (59.60%), Query Frame = 1
Query:  229 QKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWP-SQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGV 678
            Q++    VS  G+ D     RT++QM++TM+R+ ED      T P S + R  SG    R PW I+E E++ K+R D+PG+S+ DVK+ VE+++LVIK E+ +           + ++ W      SY TR+ LPDN E +KI+AE+K+GV
Sbjct:   73 QQRLTMDVSPFGLLDPLSPMRTMRQMLDTMDRMFED------TMPVSGRNRGGSGVSEIRAPWDIKEEEHEIKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKE----------DSDDSWSGRSVSSYGTRLQLPDNCEKDKIKAELKNGV 207          
BLAST of FC869171 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.308e-21
Identity = 56/154 (36.36%), Postives = 89/154 (57.79%), Query Frame = 1
Query:  217 INPSQKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGV 678
            +    ++ A  +S  GI D +   R+++Q+++TM+R+ ED     +T+P +      G    R PW I++ E++ ++R D+PG+++ DVKV VE+ MLVIK       E   D S       W S  Y SY TR+ LPDN E +K++AE+K+GV
Sbjct:   23 VEKKPRRTAMDISPFGILDPWSPMRSMRQILDTMDRVFEDT----MTFPGRN----IGGGEIRAPWDIKDEEHEIRMRFDMPGLAKEDVKVSVEDDMLVIKGGHKSEQEHGGDDS-------WSSRTYSSYDTRLKLPDNCEKDKVKAELKNGV 161          
BLAST of FC869171 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.708e-21
Identity = 55/149 (36.91%), Postives = 88/149 (59.06%), Query Frame = 1
Query:  232 KKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGV 678
            ++ +  +S  G+ D +   R+++QM++TM+RI ED     +T P +      G    R PW I++ E++ ++R D+PG+S+ DVKV VE+ +LVIK++  + N           E+ W    Y  Y TR+ LPDN E EK++AE+KDGV
Sbjct:   81 RRSSIDISPFGLLDPWSPMRSMRQMLDTMDRIFED----AITIPGRN----IGGGEIRVPWEIKDEEHEIRMRFDMPGVSKEDVKVSVEDDVLVIKSDHREENGG---------EDCWSRKSYSCYDTRLKLPDNCEKEKVKAELKDGV 212          
BLAST of FC869171 vs. ExPASy Swiss-Prot
Match: HS21C_WHEAT (Small heat shock protein, chloroplastic OS=Triticum aestivum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.143e-18
Identity = 52/144 (36.11%), Postives = 83/144 (57.64%), Query Frame = 1
Query:  250 VSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAE-KAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGV 678
            +S  G+ D     RT++QM++TM+R+ +D     V +P++  R  +   R R PW I E E + K+R D+PG+SR +V+V VE+  LVI+ E K +  E   +G     +  W      SY  R+ALPD  +  +++AE+K+GV
Sbjct:   85 ISPFGLVDPMSPMRTMRQMLDTMDRLFDD----AVGFPTR--RSPAARARRRMPWDIMEDEKEVKMRFDMPGLSREEVRVMVEDDALVIRGEHKKEAGEGQGEGG----DGWWKERSVSSYDMRLALPDECDKSQVRAELKNGV 218          
BLAST of FC869171 vs. ExPASy Swiss-Prot
Match: HS26P_ORYSJ (26.7 kDa heat shock protein, chloroplastic OS=Oryza sativa subsp. japonica GN=HSP26.7 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.955e-17
Identity = 51/153 (33.33%), Postives = 84/153 (54.90%), Query Frame = 1
Query:  223 PSQKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQER-VRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGV 678
            P +      +S  G+ D     RT++QM++TM+RI +D     + +P+   R + +G    R PW + E + + ++R D+PG+SR +VKV VE+  LVI+ E  +      +GS    +  W      SY  R+ALPD  +  K++AE+K+GV
Sbjct:   76 PRRSSALDGISPFGLVDPMSPMRTMRQMLDTMDRIFDD---VALGFPATPRRSLATG--EVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGS---GDGWWKERSVSSYDMRLALPDECDKSKVRAELKNGV 220          
BLAST of FC869171 vs. ExPASy Swiss-Prot
Match: HS23C_CHERU (Small heat shock protein, chloroplastic OS=Chenopodium rubrum GN=HSP23 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14
Identity = 52/159 (32.70%), Postives = 84/159 (52.83%), Query Frame = 1
Query:  232 KKRAAPVSSPG---------IWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNV-EFEKIQAEVKDGV 678
            +   AP+S  G         ++D F A R+V Q+M  M+++ME+PF             R   R  R  W +RE E   ++++D+PG+++ DVKV VE++ L+IK+E  +  E        EEE+         YS+RI L  N+ + + I+AE+K+GV
Sbjct:   47 RSNRAPISRRGDFPASFFSDVFDPFRATRSVGQLMNLMDQLMENPF---------MAASRGSGRAMRRGWDVREDEEALELKVDMPGLAKEDVKVSVEDNTLIIKSEAEKETE--------EEEQR------RRYSSRIELTPNLYKIDGIKAEMKNGV 182          
BLAST of FC869171 vs. ExPASy Swiss-Prot
Match: HS26M_ARATH (26.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP26.5 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 34/87 (39.08%), Postives = 60/87 (68.97%), Query Frame = 1
Query:  418 IRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGV 678
            ++E ++ YK+R +VPG+++ DVK+ V + +L IK +    ++A  +  + EE+E W S  YG Y+T ++LPD+ + E I+AE+K+GV
Sbjct:  129 VKEQDDCYKLRYEVPGLTKEDVKITVNDGILTIKGD----HKAEEEKGSPEEDEYWSSKSYGYYNTSLSLPDDAKVEDIKAELKNGV 211          
BLAST of FC869171 vs. ExPASy Swiss-Prot
Match: HS23M_ARATH (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.236e-13
Identity = 46/139 (33.09%), Postives = 79/139 (56.83%), Query Frame = 1
Query:  265 IWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNV-EFEKIQAEVKDGV 678
            ++D F   R+V Q++  M++ ME+P        + +    SG RRG   W I+E ++   +R+D+PG+SR DVK+ +E+  LVI+ E          G   E+  E   +G   +++RI LPD + + ++I+AE+K+GV
Sbjct:   68 VFDPFSPTRSVSQVLNLMDQFMENPLL-----SATRGMGASGARRG---WDIKEKDDALYLRIDMPGLSREDVKLALEQDTLVIRGE----------GKNEEDGGEEGESGNRRFTSRIGLPDKIYKIDEIKAEMKNGV 188          
The following BLAST results are available for this feature:
BLAST of FC869171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
HS22C_PETHY1.825e-2341.61Small heat shock protein, chloroplastic OS=Petunia... [more]
HS21C_SOLLC1.825e-2341.89Small heat shock protein, chloroplastic OS=Solanum... [more]
HS25P_ARATH6.936e-2339.0725.3 kDa heat shock protein, chloroplastic OS=Arab... [more]
HS22C_SOYBN1.308e-2136.36Small heat shock protein, chloroplastic (Fragment)... [more]
HS21C_PEA1.708e-2136.91Small heat shock protein, chloroplastic OS=Pisum s... [more]
HS21C_WHEAT5.143e-1836.11Small heat shock protein, chloroplastic OS=Triticu... [more]
HS26P_ORYSJ1.955e-1733.3326.7 kDa heat shock protein, chloroplastic OS=Oryz... [more]
HS23C_CHERU7.686e-1432.70Small heat shock protein, chloroplastic OS=Chenopo... [more]
HS26M_ARATH1.311e-1339.0826.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS23M_ARATH2.236e-1333.0923.6 kDa heat shock protein, mitochondrial OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionC31009C08EF AbioticL1 Citrus clementina cDNA clone C31009C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869171 ID=FC869171; Name=FC869171; organism=Citrus clementina; type=EST; length=680bp
GGGAAATCAGTATTGGTGACTTCTCTCAATCAAAAACTATATCTTAGAAA
ATGGCATCTCATCTTGGTATCTGTACTCCCTGCGCGTCCGAAATAATCAC
CGGTTTTCCCAGCTACAGGTCTCCACCTTTGTTGAGAAATAGAGACTTTT
GTGGCAGGATAAAGGCCGTGGCAGATAACAGAGGCAGCCTTGATCACTTG
CAAAGATCGTCGCTGAATCAATCCCAGCCAAAAAAAGAGAGCGGCCCCAG
TTTCATCTCCAGGGATATGGGATAGTTTTCCTGCTGCGAGGACGGTGCAA
CAGATGATGGAAACCATGGAAAGAATAATGGAGGATCCTTTTGCTTACGG
AGTCACTTGGCCTTCACAACAAGAAAGGGTGAGAAGTGGATACAGACGGG
GAAGAACGCCTTGGGCCATCAGGGAAACGGAAAACGACTACAAGATTAGG
TTAGACGTGCCTGGCATGAGCAGGAATGATGTTAAGGTACGGGTTGAAGA
GAGCATGCTCGTAATCAAGGCAGAAAAGGCTCAAAGGAACGAAGCAAACA
CTGATGGAAGTACAGTTGAGGAAGAAGAAGAGTGGCCAAGCAATGGTTAC
GGAAGCTACAGCACTAGAATTGCATTGCCTGACAACGTAGAGTTTGAGAA
GATTCAAGCAGAGGTGAAAGATGGCGTACT
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