FC869173

Overview
NameFC869173
Unique NameFC869173
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4628 contig Ccv1_Contig4628:10..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869173 vs. ExPASy Swiss-Prot
Match: FB60_ARATH (F-box protein At1g55000 OS=Arabidopsis thaliana GN=At1g55000 PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 7.536e-57
Identity = 110/181 (60.77%), Postives = 135/181 (74.59%), Query Frame = 2
Query:  155 ALACPDTLRLILSKLSVTDLARASCVCRAWSSVASDNNMIVLAFMAPWKLKEVVGMPLNGSFWRDNGIGKFAISHRLARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERXXXXXXXXXXXXDGICYIEFDTYAKREVAVLYLEGAPEKK---PSCLLNRVTSXHGRRRIINSLERS 688
            AL C DTL +I  KL+V DLARASCVC+ W+SVA++++++V AF APW++KE+VG P + SFWRDNGI KFAISHR+ RGD+V SLAVKY+VQVMDIKRLNNMMSDHGIYSR+R            +  CY+E D YAKREVAVLYLEGAP+++   P        S  G+RR+I SL RS
Sbjct:    2 ALYCRDTLIIIFQKLTVADLARASCVCKVWNSVATEDDLVVSAFTAPWRIKELVGRPASVSFWRDNGIWKFAISHRICRGDSVTSLAVKYAVQVMDIKRLNNMMSDHGIYSRDRLLIPISNPEILANTTCYVELDKYAKREVAVLYLEGAPKREQPVPGTNQQSNLSADGKRRLIESLRRS 182          
The following BLAST results are available for this feature:
BLAST of FC869173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FB60_ARATH7.536e-5760.77F-box protein At1g55000 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionC31009C10EF AbioticL1 Citrus clementina cDNA clone C31009C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869173 ID=FC869173; Name=FC869173; organism=Citrus clementina; type=EST; length=688bp
GATCTGAAAAATGGGCTGCTGTGGCGACCAAAACGACGCCGAAGAAGAGC
TCCAAAACCATCTCCTGTCGTCCTCCTCATCCTCAGCCTCAGCCTCAGCC
TCAAGCTTCACCGACCCATCAACCGTAATCTCTCCAATGAACTCCCACTT
CAGCGCCCTCGCCTGCCCCGATACGCTGCGTTTAATCCTGTCAAAACTCA
GCGTCACGGACCTCGCACGCGCCAGCTGCGTCTGCAGAGCGTGGAGCTCC
GTCGCGTCGGATAACAACATGATCGTCCTCGCATTCATGGCTCCATGGAA
GCTTAAAGAAGTTGTGGGAATGCCCTTGAATGGATCATTCTGGAGAGATA
ATGGGATTGGAAAGTTCGCCATTTCGCATCGTTTAGCGCGTGGAGATACG
GTCGCTAGCCTCGCCGTTAAGTACTCCGTTCAGGTTATGGACATTAAACG
GTTAAATAATATGATGAGTGATCATGGCATATATTCGAGGGAGAGGTTAT
TGATCCCTATAAGCAGTCCAGAACTTCTTATAGATGGAATATGCTACATA
GAGTTTGACACCTATGCGAAAAGGGAAGTAGCAGTGCTCTATCTGGAAGG
TGCACCTGAGAAAAAGCCTAGTTGTTTGCTGAACAGGGTGACCTCTGNTC
ATGGCAGGAGAAGGATAATCAACTCCCTTGAGAGAAGC
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