FC869174

Overview
NameFC869174
Unique NameFC869174
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14135 contig Ccv1_Contig14135:57..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL5_CUCSA (60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5 PE=2 SV=1)

HSP 1 Score: 350.903 bits (899), Expect = 3.506e-96
Identity = 173/207 (83.57%), Postives = 188/207 (90.82%), Query Frame = 1
Query:   49 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRXYIYCGHVAAYMRTLM 669
            KAQK+KAYFKRYQVK+KRRREGKTDYRARIRLINQDKNKYNTPKYRFVVR +NKDITAQIISASIAGD+VLASAY+HELP+YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEP + RRPFRALLDVGL++TTTGNRVF            IPHS+KRFAG++K+ +QLD EVHR YI+ GHVAAYMRTLM
Sbjct:    5 KAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRTSNKDITAQIISASIAGDLVLASAYSHELPQYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGYAKNGQQLDVEVHRKYIFGGHVAAYMRTLM 211          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL52_ARATH (60S ribosomal protein L5-2 OS=Arabidopsis thaliana GN=RPL5B PE=2 SV=3)

HSP 1 Score: 339.347 bits (869), Expect = 1.056e-92
Identity = 166/206 (80.58%), Postives = 183/206 (88.83%), Query Frame = 1
Query:   49 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRXYIYCGHVAAYMRTL 666
            K+ KS AYFKRYQVK++RRR+GKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI AQI+SASIAGDIV ASAYAHELP+YGL VGLTNYAAAYCTGLLLARRVLKMLEMD EYEGNVEATGED+SVEPT++RRPFRALLDVGL++TTTGNRVF            IPHS+KRFAGF K++KQLDAE+HR YIY GHV+ YM+ L
Sbjct:    5 KSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLL 210          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL51_ARATH (60S ribosomal protein L5-1 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=2)

HSP 1 Score: 338.961 bits (868), Expect = 1.379e-92
Identity = 166/206 (80.58%), Postives = 183/206 (88.83%), Query Frame = 1
Query:   49 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRXYIYCGHVAAYMRTL 666
            K+ KS AYFKRYQVK++RRR+GKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI AQI+SASIAGDIV ASAYAHELP+YGL VGLTNYAAAYCTGLLLARRVLKMLEMD EYEGNVEATGED+SVEPT++RRPFRALLDVGL++TTTGNRVF            IPHS+KRFAGF K++KQLDAE+HR YIY GHV+ YM+ L
Sbjct:    5 KSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLL 210          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL51_ORYSI (60S ribosomal protein L5-1 OS=Oryza sativa subsp. indica GN=RPL5A PE=2 SV=2)

HSP 1 Score: 328.946 bits (842), Expect = 1.427e-89
Identity = 157/206 (76.21%), Postives = 179/206 (86.89%), Query Frame = 1
Query:   49 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRXYIYCGHVAAYMRTL 666
            K QK+ AY+KR+QVK+KRRR+GKTDYRARIRL NQDKNKYNTPKYRFVVRFTNKDITAQI+ A+IAGDIV+A+AY+HELPRYGLEVGLTNYAAAYCTGLLLARRVLK+  +D EYEGN+EATGEDY VEP + RRPFRALLDVGL++TTTGNRVF            IPHS+KRFAGF KD KQLD+++HR YIY GHVA YMR++
Sbjct:    6 KTQKTNAYYKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSM 211          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL51_ORYSJ (60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica GN=RPL5A PE=2 SV=1)

HSP 1 Score: 327.405 bits (838), Expect = 4.151e-89
Identity = 157/206 (76.21%), Postives = 178/206 (86.41%), Query Frame = 1
Query:   49 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRXYIYCGHVAAYMRTL 666
            K QK+ AY KR+QVK+KRRR+GKTDYRARIRL NQDKNKYNTPKYRFVVRFTNKDITAQI+ A+IAGDIV+A+AY+HELPRYGLEVGLTNYAAAYCTGLLLARRVLK+  +D EYEGN+EATGEDY VEP + RRPFRALLDVGL++TTTGNRVF            IPHS+KRFAGF KD KQLD+++HR YIY GHVA YMR++
Sbjct:    6 KTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSM 211          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL52_ORYSJ (60S ribosomal protein L5-2 OS=Oryza sativa subsp. japonica GN=RPL5B PE=3 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 7.327e-86
Identity = 155/206 (75.24%), Postives = 175/206 (84.95%), Query Frame = 1
Query:   49 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRXYIYCGHVAAYMRTL 666
            K QK+ AYFKR+QVK+KRRR+GKTDYRARIRL NQDKNKYNTPKYRFV   TNKDITAQI+ A+IAGDIV+A+AY+HELPRYGLEVGLTNYAAAYCTGLLLARRVL +  +D EYEGNVEATGEDY VEP + RRPFRALLDVGL++TTTGNRVF            IPHS+KRFAGF KD KQLD+++HR YIY GHVA YMR++
Sbjct:    9 KTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSM 211          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL5_SUBDO (60S ribosomal protein L5 OS=Suberites domuncula GN=RPL5 PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.093e-68
Identity = 131/207 (63.29%), Postives = 154/207 (74.40%), Query Frame = 1
Query:   49 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPT-ENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRXYIYCGHVAAYMRTL 666
            K  K+KAYFKRYQVK++RRREGKTDYRAR RL+ QDKNKYNTPKYR V+RFTN DI  QII A I GD VL SAYAHELPRYG++VGLTNYAAAYCTGLLLARR+L  L +  +Y G  +  GED++VE   +  RPFRA LDVGL +TTTGNRVF            IPHS  RF G+ ++S QL+A+  R YI+ GHV+ YM+ L
Sbjct:    5 KVIKNKAYFKRYQVKFRRRREGKTDYRARKRLVVQDKNKYNTPKYRIVIRFTNTDIICQIIYAKIEGDKVLVSAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTNLGLADKYAGQTDIDGEDFNVEHMGDGPRPFRAFLDVGLTRTTTGNRVFAAMKGAVDGGIDIPHSPSRFVGYDEESSQLEADKLRQYIFGGHVSDYMKYL 211          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL5_CAEBR (60S ribosomal protein L5 OS=Caenorhabditis briggsae GN=rpl-5 PE=3 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 4.039e-68
Identity = 128/206 (62.14%), Postives = 153/206 (74.27%), Query Frame = 1
Query:   49 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRXYIYCGHVAAYMRTL 666
            K  K+KAYFKRYQVK KRRREGKTDY AR RL  QDKNKYNTPKYR +VR TNKDI AQ+  + I GD+V+ASAYAHELPRYGL+ GLTNYAAAY TGLLLARR LK + +D+ Y+G+ E TGEDY+VE   +R PF+A+LD+GL +TTTG+++F            +PHSE RF GF ++SK  +AE HR  I   HVA YM  L
Sbjct:    5 KVIKNKAYFKRYQVKLKRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRLTNKDIVAQLAYSKIEGDVVVASAYAHELPRYGLKAGLTNYAAAYATGLLLARRHLKAIGLDSTYKGHEELTGEDYNVEEEGDRAPFKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRFFGFDQESKDYNAEAHRDRILGKHVADYMSLL 210          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL5_CAEEL (60S ribosomal protein L5 OS=Caenorhabditis elegans GN=rpl-5 PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 6.890e-68
Identity = 126/206 (61.17%), Postives = 155/206 (75.24%), Query Frame = 1
Query:   49 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRXYIYCGHVAAYMRTL 666
            K  K+KAYFKRYQVK +RRREGKTDY AR RL  QDKNKYNTPKYR +VR TNKD+ AQ+  + I GD+V+ASAY+HELPRYGL+VGLTNYAAAY TGLLLARR LK + +D+ Y+G+ E TGEDY+VE   +R PF+A+LD+GL +TTTG+++F            +PHSE RF GF ++SK+ +AE HR  I   HVA YM  L
Sbjct:    5 KVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDVVAQLAYSKIEGDVVVASAYSHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYKGHEELTGEDYNVEEEGDRAPFKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRFFGFDQESKEYNAEAHRDRILGKHVADYMTYL 210          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL5_STYCL (60S ribosomal protein L5 OS=Styela clava GN=RPL5 PE=3 SV=3)

HSP 1 Score: 251.521 bits (641), Expect = 2.895e-66
Identity = 125/207 (60.39%), Postives = 150/207 (72.46%), Query Frame = 1
Query:   49 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENR-RPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRXYIYCGHVAAYMRTL 666
            K  K+KAYFKRYQVKYKRRR+GKTDY AR RL+ QDKNKYNTPKYR +VRFTNKDI  QI  A I GD+V+ +AYAHELPRYG++VGLTNYAAAYCTGLLL+RR+L    +D  YEG  E  G+++ VE  + +   FRA LDVGL +TTTG +VF            IPHS KRF G+  +S    AEVHR +I+ GHV+ YM+ L
Sbjct:    5 KVVKNKAYFKRYQVKYKRRRQGKTDYFARKRLVVQDKNKYNTPKYRMIVRFTNKDIVCQIAYARIEGDVVICAAYAHELPRYGVKVGLTNYAAAYCTGLLLSRRLLNKFGLDEIYEGQTEIDGDEFYVEDVDGKPGAFRAFLDVGLARTTTGAKVFGAMKGAADGGLDIPHSTKRFPGYDDESGDFSAEVHRSHIFGGHVSNYMKEL 211          
The following BLAST results are available for this feature:
BLAST of FC869174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
RL5_CUCSA3.506e-9683.5760S ribosomal protein L5 OS=Cucumis sativus GN=RPL... [more]
RL52_ARATH1.056e-9280.5860S ribosomal protein L5-2 OS=Arabidopsis thaliana... [more]
RL51_ARATH1.379e-9280.5860S ribosomal protein L5-1 OS=Arabidopsis thaliana... [more]
RL51_ORYSI1.427e-8976.2160S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL51_ORYSJ4.151e-8976.2160S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL52_ORYSJ7.327e-8675.2460S ribosomal protein L5-2 OS=Oryza sativa subsp. ... [more]
RL5_SUBDO3.093e-6863.2960S ribosomal protein L5 OS=Suberites domuncula GN... [more]
RL5_CAEBR4.039e-6862.1460S ribosomal protein L5 OS=Caenorhabditis briggsa... [more]
RL5_CAEEL6.890e-6861.1760S ribosomal protein L5 OS=Caenorhabditis elegans... [more]
RL5_STYCL2.895e-6660.3960S ribosomal protein L5 OS=Styela clava GN=RPL5 P... [more]

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Properties
Property NameValue
Genbank descriptionC31009C12EF AbioticL1 Citrus clementina cDNA clone C31009C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869174 ID=FC869174; Name=FC869174; organism=Citrus clementina; type=EST; length=670bp
TCGAACTCTGCTTCTTCTACACTTTGAGCTTCAGCAATGGCCTTTGCCAA
AGCTCAAAAGTCAAAAGCTTACTTTAAGCGATATCAAGTTAAGTACAAGA
GAAGGCGAGAGGGAAAGACTGACTATCGGGCTAGGATTCGCCTGATCAAC
CAAGATAAAAACAAGTACAACACGCCAAAGTATCGGTTTGTTGTGCGATT
CACCAACAAAGATATCACTGCACAAATTATATCTGCCAGCATAGCCGGGG
ATATAGTCCTTGCATCTGCTTATGCCCATGAGCTTCCCCGTTATGGTCTT
GAGGTGGGCCTCACTAATTATGCAGCAGCTTATTGCACTGGACTCCTCTT
GGCCCGCCGAGTCCTGAAAATGCTTGAGATGGATGCTGAGTATGAGGGGA
ACGTTGAGGCAACAGGAGAGGACTATTCAGTTGAGCCAACTGAGAACAGG
AGGCCTTTCCGTGCCCTGCTTGATGTTGGTCTTGTGAAAACAACTACTGG
TAACCGTGTCTTTGGCGCTCTTAAGGGTGCATTGGATGGTGGACTTGATA
TCCCTCACAGTGAGAAGAGATTTGCTGGATTCAGTAAGGATAGTAAGCAA
CTTGACGCTGAAGTTCACCGTNAATACATCTATTGTGGTCATGTCGCTGC
CTACATGAGGACTTTGATGG
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