FC869184

Overview
NameFC869184
Unique NameFC869184
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length644
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC869184_ssr307 microsatellite FC869184_ssr307:307..318. BLAST: Citrus ESTs to Prunus persica proteins V1
FC869184_ssr181 microsatellite FC869184_ssr181:181..195. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8716 contig Ccv1_Contig8716:16..659. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC869184 vs. ExPASy Swiss-Prot
Match: PBS1_ARATH (Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.004e-20
Identity = 59/131 (45.04%), Postives = 73/131 (55.73%), Query Frame = 1 
Query:  262 GCFPCFGSSNNKETXXXXXXXXXXXXKELNRKDSAKDGSIAQSHHV--NRVSS-----DKSKSRNGSDPKKEPAIPKEPTAHIAAQTFTFRELAAATKNFRPECLLGEGGFGRVYKGRLESTGQVVAVNSL 633
            GCF CF SS++++               LN  D +  G   QS     N +S      +K  S+     K+E  +P++    IAA TF FRELAAAT NF P+  LGEGGFGRVYKGRL+STGQVVAV  L
Sbjct:    2 GCFSCFDSSDDEK---------------LNPVDESNHGQKKQSQPTVSNNISGLPSGGEKLSSKTNGGSKRELLLPRDGLGQIAAHTFAFRELAAATMNFHPDTFLGEGGFGRVYKGRLDSTGQVVAVKQL 117
[Close]
BLAST of FC869184 vs. ExPASy Swiss-Prot
Match: RLCK7_ARATH (Probable serine/threonine-protein kinase RLCKVII OS=Arabidopsis thaliana GN=At1g07870 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.716e-12
Identity = 53/146 (36.30%), Postives = 69/146 (47.26%), Query Frame = 1 
Query:  262 GCFPCFGSSN-----NKETXXXXXXXXXXXXKELNRKDSAKDGSIAQSHHVN---RVSSDKSKSRNGSDPKKEPAIPKEPTAHI--------------AAQTFTFRELAAATKNFRPECLLGEGGFGRVYKGRLESTGQVVAVNSL 633
            GCF C   S+     NK+T              +NRK      S+A+S   +   + SSD +K     D   E  + KE    +               AQTFTF+ELA AT NFR +C LGEGGFG+V+KG +E   QVVA+  L
Sbjct:    2 GCFGCSKKSSKRSETNKDTV-------------INRKIVGGTTSVAKSDKRDDQTQPSSDSTKVSPYRDVNNEGGVGKEDQLSLDVKGLNLNDQVTGKKAQTFTFQELAEATGNFRSDCFLGEGGFGKVFKGTIEKLDQVVAIKQL 134
The following BLAST results are available for this feature:
BLAST of FC869184 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PBS1_ARATH1.004e-2045.04Serine/threonine-protein kinase PBS1 OS=Arabidopsi... [more]
RLCK7_ARATH1.716e-1236.30Probable serine/threonine-protein kinase RLCKVII O... [more]
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Properties
Property NameValue
Genbank descriptionC31009D10EF AbioticL1 Citrus clementina cDNA clone C31009D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869184 ID=FC869184; Name=FC869184; organism=Citrus clementina; type=EST; length=644bp
CCCCGAACCAAAACTCTCTTTTTTTCTTCGATTTGTTGATCTGCTTCTTT
CTTGGTCTCGATCTTTGTCTTGAATGGACACTCAAGATCGTAGAAGGATA
AGATTTTGGGGGCAAAGGTTGATCTGATGAGCAGTTTGTGAGATGGGGTT
TTCAGTATTTTTGAAGTAAAAAAATGGTGATGAGTTGAGTTGAGTGAGAA
GGATTTTGTTTTATATTAAAGTTTGAATTTTTATTGAAGATTTAATTGAT
TTGATATGGGCGGGTGTTTTCCTTGTTTTGGATCATCCAATAACAAGGAG
ACTGGTGGCGGCGGCGGCGGTGGCGCCGTTGGTGCTGTTAAGGAACTGAA
CAGGAAGGATTCAGCTAAAGACGGCTCAATTGCTCAGTCTCACCATGTCA
ATAGAGTTAGTTCAGATAAATCTAAATCTCGGAATGGTTCTGACCCAAAG
AAGGAACCAGCTATTCCAAAAGAACCAACTGCACATATTGCCGCCCAAAC
GTTTACATTTCGGGAGCTTGCTGCTGCCACCAAGAACTTTAGACCAGAAT
GTCTTTTGGGTGAAGGAGGTTTCGGACGTGTTTACAAGGGCCGCTTGGAG
AGCACAGGACAGGTAGTAGCTGTCAACAGCTTGACCGGAATGGC
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