FC869189

Overview
NameFC869189
Unique NameFC869189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length508
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9473 contig Ccv1_Contig9473:1..508. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869189 vs. ExPASy Swiss-Prot
Match: CHLP_ARATH (Geranylgeranyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=CHLP PE=1 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 1.238e-85
Identity = 128/134 (95.52%), Postives = 132/134 (98.51%), Query Frame = 3
Query:    3 YAIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIE 404
            YAIAFQER++IPDEKM YYE+LAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLS RVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAI+E
Sbjct:  229 YAIAFQERIRIPDEKMTYYEDLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSKRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVE 362          

HSP 2 Score: 68.1662 bits (165), Expect = 1.238e-85
Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 1
Query:  400 LKGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDV 507
            ++GS+NG +MIDEGDLRKYLEKWDKTY PTY+VLDV
Sbjct:  361 VEGSQNGKKMIDEGDLRKYLEKWDKTYLPTYRVLDV 396          
BLAST of FC869189 vs. ExPASy Swiss-Prot
Match: CHLP_TOBAC (Geranylgeranyl diphosphate reductase, chloroplastic OS=Nicotiana tabacum GN=CHLP PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 1.039e-81
Identity = 122/134 (91.04%), Postives = 125/134 (93.28%), Query Frame = 3
Query:    3 YAIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIE 404
            YAIAFQER+KI D+KM YYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHK DIKKFQLATR RA  KI GGKIIRVEAHPIPEHPRPRRL  RVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAI+E
Sbjct:  226 YAIAFQERIKISDDKMKYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKADIKKFQLATRLRADSKITGGKIIRVEAHPIPEHPRPRRLQDRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVE 359          

HSP 2 Score: 70.4774 bits (171), Expect = 1.039e-81
Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = 1
Query:  400 LKGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDV 507
            ++GSE G RM+DE DLRKYLEKWDKTYWPTYKVLD+
Sbjct:  358 VEGSEMGKRMVDESDLRKYLEKWDKTYWPTYKVLDI 393          
BLAST of FC869189 vs. ExPASy Swiss-Prot
Match: CHLP_ORYSJ (Geranylgeranyl diphosphate reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=CHLP PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 3.287e-77
Identity = 119/133 (89.47%), Postives = 125/133 (93.98%), Query Frame = 3
Query:    3 YAIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAII 401
            YAIAFQERVKIPD+KM YYE  AEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHK DIKKFQ ATR RAKD+I GGKIIRVEAHPIPEHPRP+R++GRV LVGDAAGYVTKCSGEGIYFAAKSGRMCAEAI+
Sbjct:  225 YAIAFQERVKIPDDKMKYYEERAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKPDIKKFQAATRLRAKDRIEGGKIIRVEAHPIPEHPRPKRVAGRVTLVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIV 357          

HSP 2 Score: 59.3066 bits (142), Expect = 3.287e-77
Identity = 24/34 (70.59%), Postives = 30/34 (88.24%), Query Frame = 1
Query:  406 GSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDV 507
            GS NGTRM++E DLR+YL ++D+ YWPTYKVLDV
Sbjct:  359 GSANGTRMVEESDLRRYLAEFDRLYWPTYKVLDV 392          
BLAST of FC869189 vs. ExPASy Swiss-Prot
Match: CHLP_SYNY3 (Geranylgeranyl diphosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=chlP PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.565e-58
Identity = 99/134 (73.88%), Postives = 112/134 (83.58%), Query Frame = 3
Query:    3 YAIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTV-THKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAII 401
            YAIAFQER+++P++KM YY+ LAEMYVGDDVSPDFY WVFPK DHVAVGTGT+  +K  IK  Q   R RA  K+ GG+II+VEAHPIPEHPRPRR+ GRVALVGDAAG VTK SGEGIYFAAKS RMCAE I+
Sbjct:  175 YAIAFQERIRLPEDKMAYYDELAEMYVGDDVSPDFYAWVFPKYDHVAVGTGTMKVNKARIKDLQAGIRTRAAKKLEGGEIIKVEAHPIPEHPRPRRVVGRVALVGDAAGTVTKSSGEGIYFAAKSARMCAETIV 308          

HSP 2 Score: 42.3578 bits (98), Expect = 1.565e-58
Identity = 17/33 (51.52%), Postives = 24/33 (72.73%), Query Frame = 1
Query:  409 SENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDV 507
            S NG R+  E DL++Y+++WDK Y  TY VLD+
Sbjct:  311 SNNGQRVPTEADLKQYIKQWDKRYGATYLVLDI 343          
BLAST of FC869189 vs. ExPASy Swiss-Prot
Match: BCHP_RHOCA (Geranylgeranyl diphosphate reductase OS=Rhodobacter capsulatus GN=bchP PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.190e-14
Identity = 50/129 (38.76%), Postives = 63/129 (48.84%), Query Frame = 3
Query:   12 AFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSGR-VALVGDAAGYVTKCSGEGIYFAAKSGRMCAEA 395
            A+ E +K P     Y     ++Y    +SPDFYGWVFP     ++G G  T   D+      T  R    +   + IR E  PIP  P     +G+ V L GDAAG V   SGEGIY+A   GR  AEA
Sbjct:  167 AYHEIIKAPTTVANYDPTRCDVYYDGRISPDFYGWVFPHGKTASIGMG--TELPDVSLKDCTTLLRQMSGLDKEETIRKEGAPIPLQPLDVWDNGKDVVLSGDAAGVVAPSSGEGIYYAHAGGRYAAEA 293          
The following BLAST results are available for this feature:
BLAST of FC869189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CHLP_ARATH1.238e-8595.52Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_TOBAC1.039e-8191.04Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_ORYSJ3.287e-7789.47Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_SYNY31.565e-5873.88Geranylgeranyl diphosphate reductase OS=Synechocys... [more]
BCHP_RHOCA3.190e-1438.76Geranylgeranyl diphosphate reductase OS=Rhodobacte... [more]
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Properties
Property NameValue
Genbank descriptionC31009E03EF AbioticL1 Citrus clementina cDNA clone C31009E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869189 ID=FC869189; Name=FC869189; organism=Citrus clementina; type=EST; length=508bp
ATTACGCCATTGCATTTCAGGAAAGAGTCAAAATCCCTGACGAGAAAATG
GTGTACTATGAGAACTTGGCGGAGATGTACGTTGGTGATGATGTGTCGCC
GGACTTTTATGGGTGGGTGTTCCCCAAGTGTGATCATGTGGCAGTTGGTA
CAGGCACAGTGACACACAAAGGTGATATCAAGAAGTTCCAACTTGCAACT
AGAAACCGGGCCAAGGACAAAATCCTTGGTGGCAAGATCATTCGAGTGGA
GGCACACCCGATTCCTGAACACCCCCGCCCGCGGAGGCTATCGGGGAGAG
TGGCATTAGTCGGAGATGCAGCCGGGTACGTCACGAAATGCTCTGGCGAA
GGCATTTACTTTGCGGCAAAGAGTGGAAGAATGTGTGCGGAGGCCATCAT
TGAAAGGGTCAGAGAATGGAACCAGGATGATCGATGAAGGGGACTTGAGG
AAGTATTTGGAGAAGTGGGATAAGACTTACTGGCCAACTTATAAGGTACT
GGATGTAT
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