FC869198

Overview
NameFC869198
Unique NameFC869198
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10851 contig Ccv1_Contig10851:2..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869198 vs. ExPASy Swiss-Prot
Match: PSMF1_ARATH (Probable proteasome inhibitor OS=Arabidopsis thaliana GN=At3g53970 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.174e-48
Identity = 101/195 (51.79%), Postives = 136/195 (69.74%), Query Frame = 1
Query:   97 MPNEKSVMAVIRAARPTFRNDFDKIAFVVHASFLASGHVLTATGPAADTEFTSPSSSTDEVGIDHWNELADDNYAFLFINPEKGSKKVLVKCLVMNSKLLADALAEGASEPVHLEINVADYVAE-NGGNYSDKFKNLEKLVTDLDKDIISKLYGSPKTASSERCEGSRPIVTDPAFGFEHE---GPQSYVTGIPV 669
            M N ++VMA+IR ARP FRN+ DK+AF +H+SF+ASG++LTATG  A  +    SSS ++VGI+ WNE  +  YAF++ NP+KGSKK+LVKCL M+ KLL DA+A+G +EP HLEI V DY  E N G+YS +FKNL+KLVTDL  +II KL G PK  +S R + S     +P +  +     GPQ + +G+ V
Sbjct:    1 MANSQTVMAMIRLARPPFRNNHDKVAFAIHSSFVASGYILTATGRPAFADEALSSSSQNDVGIEGWNEF-EGEYAFVYANPKKGSKKILVKCLAMDDKLLVDAIADGGAEPAHLEIKVGDYAEESNEGDYSAQFKNLDKLVTDLQSEIIDKLDGKPKPVAS-RAQSSSETNEEPRYYDDTPNPLGPQIHPSGVVV 193          
The following BLAST results are available for this feature:
BLAST of FC869198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PSMF1_ARATH6.174e-4851.79Probable proteasome inhibitor OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionC31009E12EF AbioticL1 Citrus clementina cDNA clone C31009E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869198 ID=FC869198; Name=FC869198; organism=Citrus clementina; type=EST; length=675bp
CTCGACGAGAACACCATCAAATTTGCAGACATTCGAAACAAGACCTCGCT
CTCTCCTAAACTCTAAAAACAAAGAAAGGAAAAAGATTAAAAAAAAATGC
CGAACGAGAAATCAGTGATGGCCGTGATAAGAGCGGCAAGACCTACCTTT
AGAAACGACTTCGATAAAATTGCATTTGTCGTTCACGCCTCTTTCCTTGC
CAGTGGACACGTGTTAACCGCCACTGGCCCTGCCGCGGACACCGAGTTCA
CCTCTCCCTCCTCCTCCACCGATGAAGTAGGAATTGATCACTGGAACGAA
CTAGCTGATGATAATTACGCGTTTCTGTTTATAAACCCTGAGAAAGGTTC
AAAGAAAGTGTTGGTGAAGTGTCTCGTGATGAACAGTAAATTGCTGGCTG
ATGCATTAGCTGAGGGAGCTTCGGAGCCTGTGCATCTCGAAATCAATGTT
GCAGACTACGTTGCAGAAAATGGAGGCAATTACTCTGATAAGTTCAAGAA
TTTAGAGAAGCTTGTGACAGATCTTGATAAAGACATTATTTCAAAATTAT
ACGGCTCCCCAAAAACAGCTAGCTCGGAAAGATGTGAAGGATCAAGGCCT
ATTGTAACCGATCCTGCTTTTGGATTTGAGCATGAAGGGCCTCAATCTTA
TGTTACAGGAATCCCTGTTCTCCTA
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