FC869205

Overview
NameFC869205
Unique NameFC869205
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9479 contig Ccv1_Contig9479:1..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC869205 vs. ExPASy Swiss-Prot
Match: RD22_ARATH (Dehydration-responsive protein RD22 OS=Arabidopsis thaliana GN=RD22 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.217e-24
Identity = 78/211 (36.97%), Postives = 96/211 (45.50%), Query Frame = 2 
Query:  122 VASHADISPELYWKTVLPNSPMPKAVKDLLQPDVLEDKSTSVNVGKGGVN----------------------VDAGKXXXXXXXXXXXXXXXXXXXXXXXD-----KRXXXXXXXXXXXXXXXXXXXPVYVGV----SPFNYVYAANENQLHDDPNTALFFLEKDLHPGMKMNLHFTQTS--NGAT-FLSRQAAKSTPFSSDKCLRSLTSF 652
            VA  AD++PE YW T LPN+P+P ++ +LL  D  ++KST+V VGKGGVN                      VD GK                             KR                   P+YVGV    +PF Y YAA E QLHDDPN ALFFLEKDL  G +MN+ F       G T FL R  A++ PF S+K   +L  F
Sbjct:   17 VAIAADLTPERYWSTALPNTPIPNSLHNLLTFDFTDEKSTNVQVGKGGVNVNTHKGKTGSGTAVNVGKGGVRVDTGKGKPGGGTHVSVGSGKGHGGGVAVHTGKPGKRTDVGVGKGGVTVHTRHKGRPIYVGVKPGANPFVYNYAAKETQLHDDPNAALFFLEKDLVRGKEMNVRFNAEDGYGGKTAFLPRGEAETVPFGSEKFSETLKRF 227
[Close]
BLAST of FC869205 vs. ExPASy Swiss-Prot
Match: BURP3_ORYSJ (BURP domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=BURP3 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.213e-19
Identity = 47/77 (61.04%), Postives = 54/77 (70.13%), Query Frame = 2 
Query:  422 PVYVGVSPFNYVYAANENQLHDDPNTALFFLEKDLHPGMKMNLHFTQTSNGATFLSRQAAKSTPFSSDKCLRSLTSF 652
            PV+V V+PF Y YAA E QLHDDPN ALFFLEKDLHPG  M +HFT T+ G  FL R  A + PFSS+K    L+ F
Sbjct:  185 PVHVNVAPFIYNYAATETQLHDDPNVALFFLEKDLHPGKTMAVHFTATTAGEKFLPRSEADAMPFSSEKVPEILSRF 261
The following BLAST results are available for this feature:
BLAST of FC869205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RD22_ARATH6.217e-2436.97Dehydration-responsive protein RD22 OS=Arabidopsis... [more]
BURP3_ORYSJ1.213e-1961.04BURP domain-containing protein 3 OS=Oryza sativa s... [more]
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Properties
Property NameValue
Genbank descriptionC31009F07EF AbioticL1 Citrus clementina cDNA clone C31009F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869205 ID=FC869205; Name=FC869205; organism=Citrus clementina; type=EST; length=677bp
GATGAAAGCCTAGATTTTAGATCACATACTATCTTGTATTCTGGGTGTCT
TTTAAAACATACTCAAAGCTATAATGGAGTTTCACTTGTTGCCCATCCTT
GCTTTCCTCAGTCTAGCACTGGTAGCAAGTCATGCTGACATTTCTCCTGA
GCTTTACTGGAAAACTGTACTGCCAAATTCCCCGATGCCAAAAGCTGTCA
AAGATCTTCTACAGCCAGATGTGCTGGAAGACAAAAGCACCTCTGTCAAC
GTAGGGAAGGGTGGTGTCAATGTGGATGCAGGGAAAGGAAAGCCCGGTGG
TGGCACCCATGTGAATGTTGGGGGTAAGGGCGTTGGTGTAAACACTGGAA
AGCCTGACAAAAGAACCAGTGTTGGTGTTGGCAAAGGAGGAGTATCCGTA
AGTACAGGACACAAGGGAAAGCCAGTTTATGTTGGAGTAAGCCCATTCAA
CTATGTATATGCTGCAAATGAGAACCAACTCCATGATGACCCGAATACAG
CTCTTTTCTTCTTGGAAAAGGACTTGCATCCTGGCATGAAGATGAACTTG
CACTTCACTCAAACTTCAAATGGAGCAACTTTCTTATCTCGCCAAGCTGC
CAAATCAACTCCTTTCTCGTCTGACAAATGCCTGAGATCTTTAACCAGTT
TTCCGTGAAACCTGGATCAGTTGAAGC
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