FC869206

Overview
NameFC869206
Unique NameFC869206
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length443
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13662 contig Ccv1_Contig13662:34..476. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLN11_ARATH (Glutamine synthetase cytosolic isozyme 1-1 OS=Arabidopsis thaliana GN=GLN1-1 PE=1 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 3.468e-52
Identity = 94/99 (94.95%), Postives = 98/99 (98.99%), Query Frame = 2 
Query:  146 TDKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 442
            TDKIIAEYIW+G SGMDMRSKARTLPGPV+DPS+LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAK+F
Sbjct:   16 TDKIIAEYIWVGGSGMDMRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKVF 114
[Close]
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA_VIGAC (Glutamine synthetase nodule isozyme OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 3.835e-51
Identity = 93/99 (93.94%), Postives = 97/99 (97.98%), Query Frame = 2 
Query:  146 TDKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 442
            T+KIIAEYIWIG SG+D+RSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVI+YPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRH AAKIF
Sbjct:   16 TEKIIAEYIWIGGSGLDLRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHNAAKIF 114
[Close]
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA1_MEDSA (Glutamine synthetase cytosolic isozyme OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 5.008e-51
Identity = 92/99 (92.93%), Postives = 98/99 (98.99%), Query Frame = 2 
Query:  146 TDKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 442
            T+KIIAEYIWIG SG+D+RSKARTLPGPV+DPS+LPKWNYDGSSTGQAPGEDSEVI+YPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF
Sbjct:   16 TEKIIAEYIWIGGSGLDLRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGEDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 114
[Close]
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLN14_ARATH (Glutamine synthetase cytosolic isozyme 1-4 OS=Arabidopsis thaliana GN=GLN1-4 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 5.008e-51
Identity = 92/99 (92.93%), Postives = 98/99 (98.99%), Query Frame = 2 
Query:  146 TDKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 442
            TD+IIAEYIWIG SG+DMRSKARTLPGPV+DPS+LPKWNYDGSSTGQAPG+DSEVI+YPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF
Sbjct:   16 TDQIIAEYIWIGGSGLDMRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGDDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 114
[Close]
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLN12_ARATH (Glutamine synthetase cytosolic isozyme 1-2 OS=Arabidopsis thaliana GN=GLN1-2 PE=1 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 5.008e-51
Identity = 92/99 (92.93%), Postives = 98/99 (98.99%), Query Frame = 2 
Query:  146 TDKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 442
            ++KIIAEYIW+G SGMDMRSKARTLPGPV+DPSKLPKWNYDGSSTGQAPG+DSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAA+IF
Sbjct:   16 SEKIIAEYIWVGGSGMDMRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGQDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAEIF 114
[Close]
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA1_LOTJA (Glutamine synthetase cytosolic isozyme OS=Lotus japonicus GN=GLN1 PE=2 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 6.541e-51
Identity = 92/99 (92.93%), Postives = 98/99 (98.99%), Query Frame = 2 
Query:  146 TDKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 442
            TDKIIAEYIWIG SG+DMRSKARTLPGPVSDPS+LPKWNYDGSSTGQAPGEDSEVILYPQAIF+DPFRRG+NILV+CDAYTPAGEPIPTNKRHAAAK+F
Sbjct:   16 TDKIIAEYIWIGGSGLDMRSKARTLPGPVSDPSQLPKWNYDGSSTGQAPGEDSEVILYPQAIFRDPFRRGSNILVICDAYTPAGEPIPTNKRHAAAKVF 114
[Close]
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA_NICPL (Glutamine synthetase OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 8.543e-51
Identity = 93/99 (93.94%), Postives = 97/99 (97.98%), Query Frame = 2 
Query:  146 TDKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 442
            T+KIIAEYIWIG SGMD+RSKARTL GPV+DP+KLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF
Sbjct:   16 TEKIIAEYIWIGGSGMDLRSKARTLSGPVTDPAKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 114
[Close]
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA4_MAIZE (Glutamine synthetase root isozyme 4 OS=Zea mays GN=GLN5 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 1.457e-50
Identity = 92/99 (92.93%), Postives = 97/99 (97.98%), Query Frame = 2 
Query:  146 TDKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 442
            T+KIIAEYIWIG SGMD+RSKARTLPGPV+DPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCD YTPAGEPIPTNKR++AAKIF
Sbjct:   16 TEKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYSAAKIF 114
[Close]
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA2_VITVI (Glutamine synthetase cytosolic isozyme 2 OS=Vitis vinifera GN=GS1-2 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 9.445e-50
Identity = 92/99 (92.93%), Postives = 94/99 (94.95%), Query Frame = 2 
Query:  146 TDKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 442
            T+KIIAEYIWIG SGMD+RSKARTL GPVSDP KLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCD YTPAGEPIPTNKRH AAKIF
Sbjct:   16 TEKIIAEYIWIGGSGMDLRSKARTLSGPVSDPHKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDTYTPAGEPIPTNKRHNAAKIF 114
[Close]
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLN11_ORYSJ (Glutamine synthetase cytosolic isozyme 1-1 OS=Oryza sativa subsp. japonica GN=GLN1-1 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.234e-49
Identity = 91/99 (91.92%), Postives = 95/99 (95.96%), Query Frame = 2 
Query:  146 TDKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 442
            T+KIIAEYIWIG SGMD+RSKARTL GPV+DPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR+GNNILVMCD YTPAGEPIPTNKRH AAKIF
Sbjct:   16 TEKIIAEYIWIGGSGMDLRSKARTLSGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRKGNNILVMCDCYTPAGEPIPTNKRHNAAKIF 114
The following BLAST results are available for this feature:
BLAST of FC869206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
GLN11_ARATH3.468e-5294.95Glutamine synthetase cytosolic isozyme 1-1 OS=Arab... [more]
GLNA_VIGAC3.835e-5193.94Glutamine synthetase nodule isozyme OS=Vigna aconi... [more]
GLNA1_MEDSA5.008e-5192.93Glutamine synthetase cytosolic isozyme OS=Medicago... [more]
GLN14_ARATH5.008e-5192.93Glutamine synthetase cytosolic isozyme 1-4 OS=Arab... [more]
GLN12_ARATH5.008e-5192.93Glutamine synthetase cytosolic isozyme 1-2 OS=Arab... [more]
GLNA1_LOTJA6.541e-5192.93Glutamine synthetase cytosolic isozyme OS=Lotus ja... [more]
GLNA_NICPL8.543e-5193.94Glutamine synthetase OS=Nicotiana plumbaginifolia ... [more]
GLNA4_MAIZE1.457e-5092.93Glutamine synthetase root isozyme 4 OS=Zea mays GN... [more]
GLNA2_VITVI9.445e-5092.93Glutamine synthetase cytosolic isozyme 2 OS=Vitis ... [more]
GLN11_ORYSJ1.234e-4991.92Glutamine synthetase cytosolic isozyme 1-1 OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionC31009F08EF AbioticL1 Citrus clementina cDNA clone C31009F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869206 ID=FC869206; Name=FC869206; organism=Citrus clementina; type=EST; length=443bp
GGGATCACGTCTCTGTGTAGTCTCATTAACATCCCTTCAATCACAGCAAT
CTCATTACCAGTTTCTTTGTTGTGTTAAGAGACTAAAGAGTCTTCGAAAC
ATGTCTCTGCTCTCAGATCTCCTTAACCTTAACCTCTCAGAATCCACTGA
CAAGATCATCGCTGAGTACATATGGATCGGTAGATCTGGCATGGACATGA
GGAGCAAAGCAAGGACTCTTCCCGGTCCCGTTAGTGATCCTTCCAAGCTG
CCTAAGTGGAATTATGATGGTTCCAGCACAGGCCAAGCACCTGGAGAAGA
TAGTGAAGTGATCCTCTATCCTCAAGCTATTTTCAAGGATCCATTCAGGA
GAGGCAACAATATTCTTGTTATGTGTGATGCTTACACTCCTGCGGGAGAA
CCAATTCCAACAAACAAAAGACATGCAGCTGCCAAGATTTTCA
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