FC869209

Overview
NameFC869209
Unique NameFC869209
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length345
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9450 contig Ccv1_Contig9450:347..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSK_CITLA (Cysteine synthase OS=Citrullus lanatus PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.214e-39
Identity = 72/90 (80.00%), Postives = 83/90 (92.22%), Query Frame = 1
Query:   76 IADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAY 345
            I+DAE KGLITPG+S+L+EPTSGNTGIGLAFIAA+KGY+LI+ MPASMSLERR +L+AFGAELVLTD A+GMKGAVQKAEEI   TPN+Y
Sbjct:   57 ISDAENKGLITPGESVLIEPTSGNTGIGLAFIAAAKGYRLIICMPASMSLERRTILRAFGAELVLTDPARGMKGAVQKAEEIKAKTPNSY 146          

HSP 2 Score: 35.8094 bits (81), Expect = 2.214e-39
Identity = 15/24 (62.50%), Postives = 20/24 (83.33%), Query Frame = 3
Query:    9 IVRQLEIMEPCCSVKDRIGFSIDS 80
            +  +LE+MEPC SVKDRIG+S+ S
Sbjct:   35 VAAKLEMMEPCSSVKDRIGYSMIS 58          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSK2_ORYSJ (Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS3 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.214e-39
Identity = 70/90 (77.78%), Postives = 82/90 (91.11%), Query Frame = 1
Query:   76 IADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAY 345
            I DAE+KGLITPGKS+L+EPTSGNTGIGLAF+AA+KGYKLILTMPASMS+ERR++LKAFGAELVLTD   GMKGA+QKA+E+    PN+Y
Sbjct:   57 ITDAEEKGLITPGKSVLIEPTSGNTGIGLAFMAAAKGYKLILTMPASMSMERRIILKAFGAELVLTDPLLGMKGAIQKADELAAKMPNSY 146          

HSP 2 Score: 36.965 bits (84), Expect = 2.214e-39
Identity = 16/22 (72.73%), Postives = 19/22 (86.36%), Query Frame = 3
Query:    9 IVRQLEIMEPCCSVKDRIGFSI 74
            I  +LEIMEPC SVKDRIG+S+
Sbjct:   35 IAAKLEIMEPCSSVKDRIGYSM 56          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSK1_BRAJU (Cysteine synthase OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.759e-39
Identity = 70/90 (77.78%), Postives = 81/90 (90.00%), Query Frame = 1
Query:   76 IADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAY 345
            I+DAEQKGLI PG+S+L+EPTSGNTG+GLAF AA+KGYKLI+TMPASMS+ERR++L AFG ELVLTD AKGMKGA+ KAEEIL  TPN Y
Sbjct:   54 ISDAEQKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSVERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGY 143          

HSP 2 Score: 36.965 bits (84), Expect = 3.759e-39
Identity = 16/24 (66.67%), Postives = 20/24 (83.33%), Query Frame = 3
Query:    9 IVRQLEIMEPCCSVKDRIGFSIDS 80
            +  +LE+MEPC SVKDRIGFS+ S
Sbjct:   32 VAAKLEMMEPCSSVKDRIGFSMIS 55          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSKP_CAPAN (Cysteine synthase, chloroplastic/chromoplastic OS=Capsicum annuum PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 4.902e-39
Identity = 83/115 (72.17%), Postives = 97/115 (84.35%), Query Frame = 1
Query:    1 VATLFASLKSWNHVVVLRTGLVSVSIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAY 345
            VA + A L+       ++  +    I+DAE+KGLI+PGK++LVEPTSGNTGIGLAFIAAS+GYKLILTMPASMSLERRV+LKAFGAELVLTD AKGMKGAV KAEEILN+TP+AY
Sbjct:   91 VANIAAKLEIMEPCCSVKDRIGFSMISDAEEKGLISPGKTVLVEPTSGNTGIGLAFIAASRGYKLILTMPASMSLERRVILKAFGAELVLTDPAKGMKGAVSKAEEILNNTPDAY 205          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSKP_SOLTU (Cysteine synthase, chloroplastic/chromoplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.402e-39
Identity = 83/115 (72.17%), Postives = 96/115 (83.48%), Query Frame = 1
Query:    1 VATLFASLKSWNHVVVLRTGLVSVSIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAY 345
            VA + A L+       ++  +    I DAE+KGLI+PGK++LVEPTSGNTGIGLAFIAAS+GYKLILTMPASMSLERRV+LKAFGAELVLTD AKGMKGAV KAEEILN+TP+AY
Sbjct:   93 VANIAAKLEIMEPCCSVKDRIGFSMIVDAEEKGLISPGKTVLVEPTSGNTGIGLAFIAASRGYKLILTMPASMSLERRVILKAFGAELVLTDPAKGMKGAVSKAEEILNNTPDAY 207          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSK2_BRAJU (Cysteine synthase OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 8.311e-39
Identity = 69/90 (76.67%), Postives = 81/90 (90.00%), Query Frame = 1
Query:   76 IADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAY 345
            I+DAE+KGLI PG+S+L+EPTSGNTG+GLAF AA+KGYKLI+TMPASMS+ERR++L AFG ELVLTD AKGMKGA+ KAEEIL  TPN Y
Sbjct:   56 ISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSIERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGY 145          

HSP 2 Score: 36.965 bits (84), Expect = 8.311e-39
Identity = 16/24 (66.67%), Postives = 20/24 (83.33%), Query Frame = 3
Query:    9 IVRQLEIMEPCCSVKDRIGFSIDS 80
            +  +LE+MEPC SVKDRIGFS+ S
Sbjct:   34 VAAKLEMMEPCSSVKDRIGFSMIS 57          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSK1_ARATH (Cysteine synthase OS=Arabidopsis thaliana GN=OASA1 PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.838e-38
Identity = 69/90 (76.67%), Postives = 80/90 (88.89%), Query Frame = 1
Query:   76 IADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAY 345
            I+DAE+KGLI PG+S+L+EPTSGNTG+GLAF AA+KGYKLI+TMPASMS ERR++L AFG ELVLTD AKGMKGA+ KAEEIL  TPN Y
Sbjct:   54 ISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGY 143          

HSP 2 Score: 36.965 bits (84), Expect = 1.838e-38
Identity = 16/24 (66.67%), Postives = 20/24 (83.33%), Query Frame = 3
Query:    9 IVRQLEIMEPCCSVKDRIGFSIDS 80
            +  +LE+MEPC SVKDRIGFS+ S
Sbjct:   32 VAAKLEMMEPCSSVKDRIGFSMIS 55          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSKM_ARATH (Cysteine synthase, mitochondrial OS=Arabidopsis thaliana GN=OASC PE=1 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 7.079e-38
Identity = 81/115 (70.43%), Postives = 94/115 (81.74%), Query Frame = 1
Query:    1 VATLFASLKSWNHVVVLRTGLVSVSIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAY 345
            VA + A L+       ++  +    + DAEQKG I+PGKS+LVEPTSGNTGIGLAFIAAS+GY+LILTMPASMS+ERRVLLKAFGAELVLTD AKGM GAVQKAEEIL +TP+AY
Sbjct:  137 VANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAY 251          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSK_MAIZE (Cysteine synthase OS=Zea mays PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 8.985e-38
Identity = 71/90 (78.89%), Postives = 81/90 (90.00%), Query Frame = 1
Query:   76 IADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAY 345
            I DAE+KGLITPG S+L+EPTSGNTGIGLAF+AA+KGYKL LTMPASMS+ERR++LKAFGAELVLTD   GMKGAV+KAEEI   TPN+Y
Sbjct:   57 ITDAEEKGLITPGVSVLIEPTSGNTGIGLAFMAAAKGYKLTLTMPASMSMERRIILKAFGAELVLTDPLLGMKGAVKKAEEIQAKTPNSY 146          

HSP 2 Score: 33.4982 bits (75), Expect = 8.985e-38
Identity = 14/19 (73.68%), Postives = 17/19 (89.47%), Query Frame = 3
Query:   18 QLEIMEPCCSVKDRIGFSI 74
            +LE MEPC SVKDRIG+S+
Sbjct:   38 KLESMEPCSSVKDRIGYSM 56          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSKP_ARATH (Cysteine synthase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=OASB PE=1 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 9.245e-38
Identity = 82/115 (71.30%), Postives = 94/115 (81.74%), Query Frame = 1
Query:    1 VATLFASLKSWNHVVVLRTGLVSVSIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAY 345
            VA++ A L+       ++  +    I DAE+KGLITPGKS+LVE TSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLL+AFGAELVLT+ AKGM GA+QKAEEIL  TPN+Y
Sbjct:   99 VASVAAKLEIMEPCCSVKDRIGYSMITDAEEKGLITPGKSVLVESTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLRAFGAELVLTEPAKGMTGAIQKAEEILKKTPNSY 213          
The following BLAST results are available for this feature:
BLAST of FC869209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CYSK_CITLA2.214e-3980.00Cysteine synthase OS=Citrullus lanatus PE=2 SV=1[more]
CYSK2_ORYSJ2.214e-3977.78Cysteine synthase OS=Oryza sativa subsp. japonica ... [more]
CYSK1_BRAJU3.759e-3977.78Cysteine synthase OS=Brassica juncea PE=2 SV=1[more]
CYSKP_CAPAN4.902e-3972.17Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSKP_SOLTU6.402e-3972.17Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSK2_BRAJU8.311e-3976.67Cysteine synthase OS=Brassica juncea PE=2 SV=1[more]
CYSK1_ARATH1.838e-3876.67Cysteine synthase OS=Arabidopsis thaliana GN=OASA1... [more]
CYSKM_ARATH7.079e-3870.43Cysteine synthase, mitochondrial OS=Arabidopsis th... [more]
CYSK_MAIZE8.985e-3878.89Cysteine synthase OS=Zea mays PE=1 SV=2[more]
CYSKP_ARATH9.245e-3871.30Cysteine synthase, chloroplastic/chromoplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31009F11EF AbioticL1 Citrus clementina cDNA clone C31009F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869209 ID=FC869209; Name=FC869209; organism=Citrus clementina; type=EST; length=345bp
GTTGCAACATTGTTCGCCAGCTTGAAATCATGGAACCATGTTGTAGTGTT
AAGGACAGGATTGGTTTCAGTATCGATAGCTGATGCCGAGCAAAAAGGAC
TAATAACGCCTGGAAAGAGTATTCTTGTAGAGCCCACTAGTGGAAACACT
GGAATTGGCCTTGCTTTCATAGCTGCTTCGAAAGGATATAAGCTCATTTT
GACTATGCCAGCCTCAATGAGCTTGGAAAGGAGAGTTCTTCTGAAAGCAT
TTGGAGCTGAGCTTGTATTAACTGATTCAGCAAAAGGCATGAAGGGGGCT
GTGCAGAAAGCTGAAGAAATTTTGAATAGCACACCTAATGCATAT
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