FC869214

Overview
NameFC869214
Unique NameFC869214
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length652
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig414 contig Ccv1_Contig414:335..987. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC869214 vs. ExPASy Swiss-Prot
Match: ARFB_ARATH (Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 1.180e-33
Identity = 54/106 (50.94%), Postives = 68/106 (64.15%), Query Frame = 1 
Query:   16 RRYGSENWVPPGRHEPVYTDLLSGFGANADPSHGFSSPFAD-----AVPVRKSVLDREGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVRYGGF 318
            RRYGSENW+   RHEP YTDLLSGFG N DPSHG   PF D     ++P ++ + D EGKF+ +A  W ++ SG SLK+ ES  KVP    D + Q R NV+Y  +
Sbjct:  491 RRYGSENWMSSARHEPTYTDLLSGFGTNIDPSHGQRIPFYDHSSSPSMPAKRILSDSEGKFDYLANQWQMIHSGLSLKLHES-PKVPA-ATDASLQGRCNVKYSEY 594

HSP 2 Score: 62.3882 bits (150), Expect = 1.180e-33
Identity = 40/118 (33.90%), Postives = 61/118 (51.69%), Query Frame = 3 
Query:  321 DYPMLNGNRVEHSHGNWLMPPLPPSNFEN------SAHSRELMPKSAMVQDQEAGKSKD--CKLFGIPLFSNHVMPEPVVSHRNTMNDPAGNLDQQFRAFESDQKSDHSKKLKLADDN 650
            +YP+LNG   E++ GNW + P   + +E        A +RE + K      +E  KS++  C+LFGIPL +N    +  +S RN +ND AG    Q  + +    SD SK  K  +D+
Sbjct:  593 EYPVLNGLSTENAGGNWPIRPRALNYYEEVVNAQAQAQAREQVTKQPFTIQEETAKSREGNCRLFGIPLTNNMNGTDSTMSQRNNLNDAAGL--TQIASPKVQDLSDQSKGSKSTNDH 708
The following BLAST results are available for this feature:
BLAST of FC869214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ARFB_ARATH1.180e-3350.94Auxin response factor 2 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionC31009G04EF AbioticL1 Citrus clementina cDNA clone C31009G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869214 ID=FC869214; Name=FC869214; organism=Citrus clementina; type=EST; length=652bp
TGTGGTGTCTGCTTCCGAAGATATGGATCAGAGAACTGGGTGCCACCAGG
GAGGCATGAACCAGTGTACACTGATTTGCTGTCAGGATTTGGAGCAAATG
CTGATCCCTCCCATGGGTTTAGTTCACCTTTTGCTGATGCAGTTCCAGTA
AGAAAAAGTGTACTGGATCGAGAGGGGAAGTTTAACTTGGTTGCTCGACC
ATGGTCCTTGATGCCCTCTGGTCCATCACTTAAAATGCCAGAGTCTAATG
CAAAAGTTCCGGTACAAGGTGGTGATGTAAATTATCAAGTGCGTGGTAAT
GTTAGATATGGCGGGTTTGTGACTATCCCATGCTTAACGGCAATAGAGTT
GAGCACTCACATGGAAACTGGTTAATGCCCCCCCTTCCCCCTTCTAATTT
TGAAAATTCAGCTCATTCGAGAGAGTTGATGCCCAAATCAGCAATGGTGC
AAGACCAAGAGGCTGGAAAATCTAAGGACTGCAAGCTTTTTGGCATTCCC
CTCTTCAGTAACCATGTTATGCCAGAGCCAGTAGTATCACATAGAAACAC
CATGAATGACCCGGCTGGAAACTTAGATCAACAATTTCGTGCATTTGAAT
CAGATCAAAAGTCAGACCATTCTAAAAAGCTCAAATTGGCAGATGATAAT
CA
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