FC869218

Overview
NameFC869218
Unique NameFC869218
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15183 contig Ccv1_Contig15183:113..775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869218 vs. ExPASy Swiss-Prot
Match: Y4105_ARATH (Uncharacterized protein At4g01050 OS=Arabidopsis thaliana GN=At4g01050 PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.044e-36
Identity = 94/186 (50.54%), Postives = 115/186 (61.83%), Query Frame = 3
Query:   69 MEALNPAGLIPLSVLCDRRSEPRKIQSLSTASLPKLATSASNKTTQQNFLECFAKXXXXXXXXXXXXXXXXXAQALTYEEALQHXXXXXXXXXXXXXFIDSVISFGTENPLAIAGGVTILAVPLVLSQVLNK-PKSWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVY 623
            MEAL  A   P+SVL ++RSEPRK  SL     PK    +    +Q++FL+ F                   A++LTYEEALQ               I+ + +F T+NPL IAGGV  LAVP VLSQVLNK PKSWGVESA+NAY KLG D +AQLLDIRA  +FRQVGSP+++GLGK+ VS VY
Sbjct:    1 MEALKTATFSPMSVLSEKRSEPRKPFSLPNLFPPK----SQRPISQESFLKRF--NGGLALLTSVLSSATAPAKSLTYEEALQQSMTTSSSFDSDG-LIEGISNFVTDNPLVIAGGVAALAVPFVLSQVLNKKPKSWGVESAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVY 179          
The following BLAST results are available for this feature:
BLAST of FC869218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4105_ARATH1.044e-3650.54Uncharacterized protein At4g01050 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC31009G08EF AbioticL1 Citrus clementina cDNA clone C31009G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869218 ID=FC869218; Name=FC869218; organism=Citrus clementina; type=EST; length=662bp
GATAGCATGCTGGCTCAAGCTTTTCCATCAATTCTTTGAGAGGCCAAAAG
ATCATATAAAATTATGCCATGGAGGCCCTCAATCCAGCGGGCTTGATACC
TTTATCGGTTCTTTGTGACAGAAGATCAGAACCCAGAAAAATTCAATCAC
TTTCCACGGCTTCTTTACCCAAACTCGCAACTTCTGCTTCTAATAAAACC
ACCCAACAAAATTTTCTAGAGTGTTTTGCAAAGAGTGTGCATGGCGGTTT
AGTGCTGTTATCTTCAGTTCTTGGTACTGGTTTAGCTCAAGCTTTAACAT
ATGAAGAAGCGCTGCAGCACTCAGCAGGCTCTTCAGCATCTGATGTTGAT
GCAAGTGGATTTATTGACAGCGTAATCAGTTTTGGAACAGAGAATCCTTT
AGCTATAGCTGGTGGTGTCACCATTTTGGCTGTTCCATTAGTTTTGTCTC
AGGTTCTGAACAAGCCTAAGTCATGGGGTGTTGAGTCTGCAAGGAATGCT
TATGCAAAGTTGGGTGACGATGCGAGTGCCCAGTTGCTTGATATAAGAGC
TCCCGTGGAATTTCGGCAAGTAGGTAGTCCTGATGTCCGGGGTTTGGGGA
AGAGGCCGGTTTCGATTGTTTACAAGGTGACGATAAGCCGGGCTTCTTGA
AGAGCTGTCTTT
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