FC869220

Overview
NameFC869220
Unique NameFC869220
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9482 contig Ccv1_Contig9482:1..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC869220 vs. ExPASy Swiss-Prot
Match: RK34_ARATH (50S ribosomal protein L34, chloroplastic OS=Arabidopsis thaliana GN=RPL34 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.264e-30
Identity = 66/86 (76.74%), Postives = 76/86 (88.37%), Query Frame = 3 
Query:  312 GLSLGLDFNSN-AGVRKEKRQGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLCPKSYPNSGKRA 566
            GLS+  D +S  +G+  ++R+GLVVRAGKAALCQTKR+RSRKSLARTHGFRRRMRTTSGRA +KRRRAKGRW LCPKS P+SGKRA
Sbjct:   72 GLSIAFDLSSQTSGLNGQRRRGLVVRAGKAALCQTKRSRSRKSLARTHGFRRRMRTTSGRATIKRRRAKGRWNLCPKSNPSSGKRA 157
[Close]
BLAST of FC869220 vs. ExPASy Swiss-Prot
Match: RK34_SPIOL (50S ribosomal protein L34, chloroplastic OS=Spinacia oleracea GN=RPL34 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.871e-28
Identity = 63/85 (74.12%), Postives = 71/85 (83.53%), Query Frame = 3 
Query:  312 GLSLGLDFNSNAGVRKEKRQGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLCPKSYPNSGKRA 566
            GLSLGLD  SN GV  ++ +  VVRAGKAALC TKR+RSRKSLARTHGFR RM TTSGRA+LKRRRAKGR +LC K+ P+SGKRA
Sbjct:   66 GLSLGLDLTSNTGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLARTHGFRLRMSTTSGRALLKRRRAKGRKILCTKTNPSSGKRA 150
The following BLAST results are available for this feature:
BLAST of FC869220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RK34_ARATH1.264e-3076.7450S ribosomal protein L34, chloroplastic OS=Arabid... [more]
RK34_SPIOL5.871e-2874.1250S ribosomal protein L34, chloroplastic OS=Spinac... [more]
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Properties
Property NameValue
Genbank descriptionC31009G11EF AbioticL1 Citrus clementina cDNA clone C31009G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869220 ID=FC869220; Name=FC869220; organism=Citrus clementina; type=EST; length=706bp
GGAGAAAGAGGATAACAAAACTCAAAAGCATAAAAAGAAGCTACCAAGAG
AAACAAAGGCTTTTCAAAAAAGGGGGAAAAATAATGGCTTCATTGTCGAT
AACAACATCAATCCCACCACCATGGCTTACTAGCAAAAGCACACATCACT
CACGAAGAATTCCTTCTGCTTCTCTCATTCTGCGGATGGGAAGAAGCTCT
GTGTCGGTGAATGTTGCCGGCAACAACTCCTCACCATCTCGCCCTGGGCT
TCTTCACTGCTCCTTTGTTTCCTCTTCTTTATGTTCTTCCGCTTTTCATT
CAGCTTTTTCAGGTCTATCCTTAGGGCTAGATTTCAATTCTAATGCTGGG
GTGCGAAAGGAGAAACGCCAGGGTCTGGTGGTGAGGGCGGGGAAGGCTGC
TCTGTGTCAAACTAAGCGGAATAGGTCTCGAAAATCCCTAGCTCGCACTC
ATGGCTTCCGCAGACGGATGAGAACCACTAGTGGAAGAGCAATATTGAAG
CGTCGAAGAGCCAAAGGACGGTGGGTACTTTGTCCCAAGTCCTACCCCAA
TAGTGGGAAGCGTGCCTAACTACTCATTGTATTCAGTTTCAGTAGGTGAA
TTTTAATATTCAATGTGGTTCGCAGATGATCTTCTGAACCTGATCAGAAG
CTTTGTTTGTTGTTCCATTTGGGCATCTGTTGTATTCAGNTAAATGAAAA
ATCACA
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