FC869221

Overview
NameFC869221
Unique NameFC869221
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869221 vs. ExPASy Swiss-Prot
Match: RK10_ARATH (50S ribosomal protein L10, chloroplastic OS=Arabidopsis thaliana GN=RPL10 PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.884e-63
Identity = 116/152 (76.32%), Postives = 130/152 (85.53%), Query Frame = 1
Query:  238 IRAAISRXXXXXXXXXXXXHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKXLGALQGPAI 693
            IR+A+SR            HLENCHL+AAI YKG TVKQFQDLRR+LP+ TKLIVAKNTLV+KAIEGT+WEALKPCM GMNAWLFV T+EIP+AIKPYR+FQKE+KLE NDFAGAVFEGKFYAP +FK LE+MPTRAE+YAK LGALQ PAI
Sbjct:   39 IRSAVSRNKKEETVEAVKSHLENCHLLAAINYKGLTVKQFQDLRRTLPDTTKLIVAKNTLVFKAIEGTKWEALKPCMKGMNAWLFVQTDEIPSAIKPYRSFQKERKLENNDFAGAVFEGKFYAPDNFKVLETMPTRAEVYAKMLGALQSPAI 190          
BLAST of FC869221 vs. ExPASy Swiss-Prot
Match: RK10_TOBAC (50S ribosomal protein L10, chloroplastic OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.408e-60
Identity = 112/163 (68.71%), Postives = 129/163 (79.14%), Query Frame = 1
Query:  202 HPSKRSKPPPTHIRAAISRXXXXXXXXXXXXHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKXLGALQGPA 690
            HP  + K     IR+AISR             LE+C+L+A I YKG TVKQFQ+LR  LP+ TKL+VAKNTLV KAIEGT+WEALKPCM GMNAWLFVH+EEIPAA+KPYR FQKEKKLEENDF GAVFEGKFY P +FKALE++PTRAEIYA+ LG+L+GPA
Sbjct:   33 HPHFKPKSKNLTIRSAISRTKKEETVETVKQQLEDCYLLAGIGYKGLTVKQFQELRSQLPDTTKLLVAKNTLVLKAIEGTKWEALKPCMKGMNAWLFVHSEEIPAALKPYRTFQKEKKLEENDFTGAVFEGKFYGPEEFKALETLPTRAEIYAQLLGSLKGPA 195          
BLAST of FC869221 vs. ExPASy Swiss-Prot
Match: RL10_PROMP (50S ribosomal protein L10 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplJ PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.756e-17
Identity = 49/133 (36.84%), Postives = 79/133 (59.40%), Query Frame = 1
Query:  298 LENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLI-VAKNTLVYKAIEG-TQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKXLGALQGPA 690
            L++  +   + YKG T+K+  DLR  L  N  +  V KN+L+ KAI+G + W  L+  ++G NA++ +  E++  A+K  ++FQKE K  E    GA+FEG+  +  + K + S+P+R  + AK  GAL G A
Sbjct:   19 LDDSEMAVVLDYKGLTIKEMSDLRSRLQTNNGICKVTKNSLMRKAIDGNSNWTDLESLLTGTNAFVLIK-EDVGGAVKAIQSFQKETKKSETK--GALFEGRLLSESEIKEIASLPSREVLMAKIAGALNGVA 148          
BLAST of FC869221 vs. ExPASy Swiss-Prot
Match: RL10_PROM5 (50S ribosomal protein L10 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplJ PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.013e-16
Identity = 49/133 (36.84%), Postives = 79/133 (59.40%), Query Frame = 1
Query:  298 LENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLI-VAKNTLVYKAIEG-TQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKXLGALQGPA 690
            L++  +   + YKG T+K+  DLR  L  N  +  V KN+L+ KAI+G + W  L+  ++G NA++ +  E++  A+K  ++FQKE K  E    GA+FEG+  +  + K + S+P+R  + AK  GAL G A
Sbjct:   19 LDDSEMAVVLDYKGLTIKEMSDLRSRLQTNKGICKVTKNSLMRKAIDGNSNWTDLESLLTGTNAFVLIK-EDVGGAVKAIQSFQKETKKSETK--GALFEGRLLSQSEIKEIASLPSREVLMAKIAGALNGVA 148          
BLAST of FC869221 vs. ExPASy Swiss-Prot
Match: RL10_PROMS (50S ribosomal protein L10 OS=Prochlorococcus marinus (strain AS9601) GN=rplJ PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 46/133 (34.59%), Postives = 78/133 (58.65%), Query Frame = 1
Query:  298 LENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLI-VAKNTLVYKAIEG-TQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKXLGALQGPA 690
            L++  +   + YKG T+K+  DLR  L     +  V KN+L+ KAI+G + W  L+  ++G NA++ +  E++  A+K  ++FQK+ K  E    GA+FEG+  +  + K + S+P++  + AK  GAL G A
Sbjct:   19 LDDSEMAVVLDYKGLTIKEMSDLRSRLQTTNGICKVTKNSLMRKAIDGDSNWNDLESLLTGTNAFVLIK-EDVGGAVKAIQSFQKDTKKSETK--GALFEGRLLSDSEIKEIASLPSKEVLMAKIAGALNGVA 148          
BLAST of FC869221 vs. ExPASy Swiss-Prot
Match: RL10_PROM0 (50S ribosomal protein L10 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplJ PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.495e-15
Identity = 46/133 (34.59%), Postives = 77/133 (57.89%), Query Frame = 1
Query:  298 LENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLI-VAKNTLVYKAIEG-TQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKXLGALQGPA 690
            L +  +   + YKG T+K+  DLR  L     +  V KN+L+ KAI+G + W  L+  ++G NA++ +  E++  A+K  ++FQK+ K  E    GA+FEG+  +  + K + S+P++  + AK  GAL G A
Sbjct:   19 LNDSEMAVVLDYKGLTIKEMSDLRSRLQTTNGICKVTKNSLMRKAIDGDSNWNDLESLLTGTNAFVLIK-EDVGGAVKAIQSFQKDTKKSETK--GALFEGRLLSDSEIKEIASLPSKEVLMAKIAGALNGVA 148          
BLAST of FC869221 vs. ExPASy Swiss-Prot
Match: RL10_PROM9 (50S ribosomal protein L10 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplJ PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.259e-15
Identity = 46/133 (34.59%), Postives = 77/133 (57.89%), Query Frame = 1
Query:  298 LENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLI-VAKNTLVYKAIEG-TQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKXLGALQGPA 690
            L +  +   + YKG T+K+  DLR  L     +  V KN+L+ KAI+G + W  L+  ++G NA++ +  E++  A+K  ++FQK+ K  E    GA+FEG+  +  + K + S+P++  + AK  GAL G A
Sbjct:   19 LNDSEMAVVLDYKGLTIKEMSDLRSRLQTTNGICKVTKNSLMRKAIDGDSNWNDLESLLTGTNAFVLIK-EDVGGAVKAIQSFQKDTKKSETK--GALFEGRLLSNSEIKEIASLPSKEVLMAKIAGALNGVA 148          
BLAST of FC869221 vs. ExPASy Swiss-Prot
Match: RL10_PROM2 (50S ribosomal protein L10 OS=Prochlorococcus marinus (strain MIT 9215) GN=rplJ PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.259e-15
Identity = 46/133 (34.59%), Postives = 77/133 (57.89%), Query Frame = 1
Query:  298 LENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLI-VAKNTLVYKAIEG-TQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKXLGALQGPA 690
            L +  +   + YKG T+K+  DLR  L     +  V KN+L+ KAI+G + W  L+  ++G NA++ +  E++  A+K  ++FQK+ K  E    GA+FEG+  +  + K + S+P++  + AK  GAL G A
Sbjct:   19 LNDSEMAVVLDYKGLTIKEMSDLRSRLRTTNGICRVTKNSLMRKAIDGDSNWNDLESLLTGTNAFVLIK-EDVGGAVKAIQSFQKDTKKSETK--GALFEGRLLSDSEIKEIASLPSKEVLMAKIAGALNGVA 148          
BLAST of FC869221 vs. ExPASy Swiss-Prot
Match: RL10_PROM4 (50S ribosomal protein L10 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.238e-14
Identity = 48/133 (36.09%), Postives = 76/133 (57.14%), Query Frame = 1
Query:  298 LENCHLIAAIKYKGFTVKQFQDLRRSL-PENTKLIVAKNTLVYKAIEG-TQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKXLGALQGPA 690
            L+   +   I Y+G T+K+  DLR  L P +    V KNTL+ KAI+G T W +L+  ++G NA++ V  + +  A+K  + FQKE K  +    G +FEGK  +  + KA+ ++PT+  + A+  GAL   A
Sbjct:   19 LDQAEMALVIDYQGLTIKEMSDLRTRLGPSSGICKVTKNTLMRKAIDGDTSWSSLESLLNGTNAFVLVKGD-VGGALKAVQAFQKETKKSKTK--GGLFEGKLLSQDEIKAIANLPTKEVLMAQIAGALNSIA 148          
BLAST of FC869221 vs. ExPASy Swiss-Prot
Match: RL10_TRIEI (50S ribosomal protein L10 OS=Trichodesmium erythraeum (strain IMS101) GN=rplJ PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.603e-14
Identity = 47/134 (35.07%), Postives = 76/134 (56.72%), Query Frame = 1
Query:  295 HLENCHLIAAIKYKGFTVKQFQDLRRSL-PENTKLIVAKNTLVYKAI-EGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKXLGALQGPA 690
            +L    L   I Y+G +V +  DLRR L P  +   +AKNTL+  A+ E + W+ ++  ++G NA+LF+  + I  AIK Y++FQK  K  + +F G V EG+       KA+  +P++ E+ A+  GA+   A
Sbjct:   18 NLSESQLALVINYQGLSVAEITDLRRRLIPTGSICSIAKNTLMGIAVKEDSNWQPMEDLLAGSNAFLFLKND-IGGAIKAYQDFQKATK--KTEFKGGVMEGRLLDKDQVKAIADLPSKEELLAQVAGAINNIA 148          
The following BLAST results are available for this feature:
BLAST of FC869221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
RK10_ARATH1.884e-6376.3250S ribosomal protein L10, chloroplastic OS=Arabid... [more]
RK10_TOBAC7.408e-6068.7150S ribosomal protein L10, chloroplastic OS=Nicoti... [more]
RL10_PROMP7.756e-1736.8450S ribosomal protein L10 OS=Prochlorococcus marin... [more]
RL10_PROM51.013e-1636.8450S ribosomal protein L10 OS=Prochlorococcus marin... [more]
RL10_PROMS1.463e-1534.5950S ribosomal protein L10 OS=Prochlorococcus marin... [more]
RL10_PROM02.495e-1534.5950S ribosomal protein L10 OS=Prochlorococcus marin... [more]
RL10_PROM93.259e-1534.5950S ribosomal protein L10 OS=Prochlorococcus marin... [more]
RL10_PROM23.259e-1534.5950S ribosomal protein L10 OS=Prochlorococcus marin... [more]
RL10_PROM41.238e-1436.0950S ribosomal protein L10 OS=Prochlorococcus marin... [more]
RL10_TRIEI3.603e-1435.0750S ribosomal protein L10 OS=Trichodesmium erythra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31009G12EF AbioticL1 Citrus clementina cDNA clone C31009G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869221 ID=FC869221; Name=FC869221; organism=Citrus clementina; type=EST; length=693bp
GAGAACTGATATACGCATCATAATGATAAGATAAGCCCTCCAAGAAACAG
GACAGCTGAGCCTCTGGTCTGCTGATCTGCACTTATCCTTCTCCCGCAGC
CTCTATTTTTTTTCAATTCCACCATGGAAGTTTCTCTCCTTTCTTTATCT
TCCTCTCAAAACCTAACCCTAAAACCAAGCACTAACCCACTTTTCCATTT
CCACCCTTCAAAACGCAGCAAACCACCACCAACCCACATCAGGGCCGCCA
TTTCCAGGACCAAGAAAGAAGAAACAGTTGACACTGTCAAAACCCATCTC
GAAAATTGCCATTTAATTGCTGCTATCAAGTACAAAGGCTTCACTGTTAA
GCAATTTCAAGATTTGAGACGGTCATTGCCAGAAAACACTAAGCTTATTG
TGGCTAAAAACACTCTTGTCTATAAAGCCATTGAAGGGACCCAATGGGAA
GCTCTGAAGCCTTGCATGAGTGGAATGAATGCTTGGCTTTTCGTTCACAC
TGAGGAGATTCCTGCGGCTATTAAGCCGTACAGGAACTTTCAGAAAGAGA
AGAAATTGGAAGAAAATGATTTTGCTGGGGCGGTTTTTGAAGGCAAGTTT
TATGCGCCTGGTGATTTTAAAGCTTTGGAGAGTATGCCCACGAGAGCTGA
GATTTATGCTAAGNTGTTGGGGGCATTGCAGGGGCCGGCTATT
back to top