FC869225

Overview
NameFC869225
Unique NameFC869225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9484 contig Ccv1_Contig9484:1..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_ARATH (Porphobilinogen deaminase, chloroplastic OS=Arabidopsis thaliana GN=HEMC PE=1 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 5.938e-64
Identity = 129/179 (72.07%), Postives = 142/179 (79.33%), Query Frame = 3
Query:  198 CYPGSVSLVGFSSPRLKTPSFPKSLKKRSF-GLVRASAAVE--TKVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            C  GSVS +GFS P++ +P+  K  +K+S  G V+A  AVE  T+ AIIRIGTRGSPLALAQA+ETR KL   HPEL ++GAI I IIKTTGDKILSQPLADIGGKGLFTKEIDEALIN  IDIAVHSMKDVPTYLPEKTILPCNL REDVRDAFI          PAGS+VGTASLRR
Sbjct:   27 CSLGSVSAIGFSLPQISSPALGKCRRKQSSSGFVKACVAVEQKTRTAIIRIGTRGSPLALAQAYETREKLKKKHPELVEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLPEKTILPCNLPREDVRDAFICLTAATLAELPAGSVVGTASLRR 205          

HSP 2 Score: 23.483 bits (49), Expect = 5.938e-64
Identity = 8/11 (72.73%), Postives = 11/11 (100.00%), Query Frame = 2
Query:  722 KKSQILHRYPS 754
            +KSQILH+YP+
Sbjct:  205 RKSQILHKYPA 215          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_PEA (Porphobilinogen deaminase, chloroplastic OS=Pisum sativum GN=HEMC PE=1 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 3.773e-60
Identity = 119/149 (79.87%), Postives = 126/149 (84.56%), Query Frame = 3
Query:  294 VRASAAVE-----TKVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            +RAS AVE      K A+IRIGTRGSPLALAQAHETR+KLMA H ELA+EGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALIN  IDIAVHSMKDVPTYLPE+TILPCNL REDVRDAFI          PAGS++GTASLRR
Sbjct:   44 IRASLAVEQQTQQNKTALIRIGTRGSPLALAQAHETRDKLMASHTELAEEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGDIDIAVHSMKDVPTYLPEETILPCNLPREDVRDAFISLSAASLADLPAGSVIGTASLRR 192          

HSP 2 Score: 25.7942 bits (55), Expect = 3.773e-60
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 2
Query:  722 KKSQILHRYPS 754
            +KSQILHRYPS
Sbjct:  192 RKSQILHRYPS 202          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_ORYSJ (Porphobilinogen deaminase, chloroplastic OS=Oryza sativa subsp. japonica GN=HEMC PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 6.265e-54
Identity = 109/148 (73.65%), Postives = 123/148 (83.11%), Query Frame = 3
Query:  294 VRASAAVET----KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            VRA+ AV+     KV++IRIGTRGSPLALAQAHETR+KL A H ELA+EGA++IVIIKTTGD IL +PLADIGGKGLFTKEID+AL+  +IDIAVHSMKDVPTYLPE TILPCNL REDVRDAFI          PAGS+VG+ASLRR
Sbjct:   33 VRAAVAVQAEAQAKVSLIRIGTRGSPLALAQAHETRDKLKAAHSELAEEGAVEIVIIKTTGDMILDKPLADIGGKGLFTKEIDDALLQGRIDIAVHSMKDVPTYLPEGTILPCNLPREDVRDAFICLTASSLAELPAGSVVGSASLRR 180          

HSP 2 Score: 20.7866 bits (42), Expect = 6.265e-54
Identity = 7/11 (63.64%), Postives = 11/11 (100.00%), Query Frame = 2
Query:  722 KKSQILHRYPS 754
            ++SQIL++YPS
Sbjct:  180 RQSQILYKYPS 190          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_PARDP (Porphobilinogen deaminase OS=Paracoccus denitrificans (strain Pd 1222) GN=hemC PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.681e-37
Identity = 79/131 (60.31%), Postives = 100/131 (76.34%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IRIGTRGS LALAQAHETR++LMA H   A   A +IV+IKTTGD++L +PL +IGGKGLFT+EI++AL+  +IDIAVHSMKD+PT  PE  ++ C L REDVRDAF+          P G++VG++SLRR
Sbjct:   11 IRIGTRGSALALAQAHETRDRLMAAHGLAAD--AFRIVVIKTTGDRVLDRPLKEIGGKGLFTREIEDALLAHEIDIAVHSMKDMPTIQPEGLVIDCYLPREDVRDAFVSAQFAAISELPQGAVVGSSSLRR 139          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_NITWN (Porphobilinogen deaminase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=hemC PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.054e-33
Identity = 79/129 (61.24%), Postives = 92/129 (71.32%), Query Frame = 3
Query:  339 IGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IGTRGSPLALAQAHE R++L   H ++A E  I I  I+T+GD I  +PL D+GGKGLFTKEI+EAL+   ID AVHS KDVPT+LP+ T LP  L REDVRD FI          PAG+ VGTASLRR
Sbjct:   13 IGTRGSPLALAQAHEVRDRLARAH-QVAPE-RIAIKTIRTSGDAIQDRPLFDVGGKGLFTKEIEEALLAGTIDFAVHSSKDVPTFLPDATWLPAFLPREDVRDVFISPHAGSLNDLPAGATVGTASLRR 139          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_NITHX (Porphobilinogen deaminase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=hemC PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.349e-33
Identity = 80/129 (62.02%), Postives = 93/129 (72.09%), Query Frame = 3
Query:  339 IGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IGTRGS LALAQA+E R++L   H ++A E  I I  I+T+GD I  +PL D+GGKGLFTKEI+EAL+   ID AVHS KDVPT+LP+ T LP  L REDVRDAFI          PAGSIVGTASLRR
Sbjct:   13 IGTRGSALALAQANEVRDRLARAH-QVAPE-RIVIKTIRTSGDAIQDRPLFDVGGKGLFTKEIEEALLAGSIDFAVHSSKDVPTFLPDATWLPAFLPREDVRDAFISPRAASLNDLPAGSIVGTASLRR 139          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_AGRT5 (Porphobilinogen deaminase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=hemC PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.289e-31
Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = 3
Query:  336 RIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            RIGTRGSPLALAQA+ETR++LMA H     E   +IV++ T GD+I  + L++IGGKGLFT+E++  L++ ++DIAVHS KD+PT LPE   L   L RED+RDAFI          P G++VG+ASLRR
Sbjct:    7 RIGTRGSPLALAQAYETRSRLMAAHG--LPEEMFEIVVLSTKGDRITDRALSEIGGKGLFTEELENQLLSGELDIAVHSSKDMPTVLPEGLHLSAFLPREDMRDAFIGRTAPKLLELPQGAVVGSASLRR 134          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_RHILO (Porphobilinogen deaminase OS=Rhizobium loti GN=hemC PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.898e-31
Identity = 72/131 (54.96%), Postives = 93/131 (70.99%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            ++IGTRGSPLALAQAHET+ +LMA H   A+  A ++V+I T+GD+I  +PL++ GGKGLFTKEI+EAL+   IDIAVHS KD+PT LP+   L   L RED RDAF+            G+ VG++SLRR
Sbjct:    5 LKIGTRGSPLALAQAHETQARLMAAHGLPAE--AFEVVVISTSGDRIQDRPLSEAGGKGLFTKEIEEALLAGAIDIAVHSSKDMPTQLPDGLELSAFLPREDARDAFVGKAAKTIADLLRGAKVGSSSLRR 133          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_RHIME (Porphobilinogen deaminase OS=Rhizobium meliloti GN=hemC PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.431e-30
Identity = 69/133 (51.88%), Postives = 91/133 (68.42%), Query Frame = 3
Query:  336 RIGTRGSPLALAQAHETRNKLMALH---PELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            RIGTRGSPLA+AQ HETR++L A H   PE+      +IVI+ T GD+I  + LA+IGGKGLFT+E+++ L++  +D AVHS KD+PT LPE   L   L RED+RDAF+          P G+ VG++SLRR
Sbjct:    7 RIGTRGSPLAMAQTHETRDRLAAAHGLPPEM-----FEIVILSTKGDRITDRSLAEIGGKGLFTEELEQQLLSGDLDFAVHSSKDMPTKLPEGLFLSAFLPREDIRDAFVGRSAKRLVDLPQGATVGSSSLRR 134          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_OCHA4 (Porphobilinogen deaminase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=hemC PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.058e-29
Identity = 70/135 (51.85%), Postives = 93/135 (68.89%), Query Frame = 3
Query:  321 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            K   ++IGTRGS LALAQA+ETR +LM  H     E AI+I+ + T GD+I  + L++IGGKGLFT+EI++AL + +ID+AVHS KD+PT LP+   L   L+RED RDAFI          P G+ VG++SLRR
Sbjct:    7 KNGTLKIGTRGSKLALAQAYETRRRLMEAHG--LPEEAIEIIPMSTAGDRIQDRALSEIGGKGLFTEEIEQALTDGRIDLAVHSTKDMPTVLPDGLHLSVFLEREDPRDAFIGRTASRLLDLPQGATVGSSSLRR 139          
The following BLAST results are available for this feature:
BLAST of FC869225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 460
Match NameE-valueIdentityDescription
HEM3_ARATH5.938e-6472.07Porphobilinogen deaminase, chloroplastic OS=Arabid... [more]
HEM3_PEA3.773e-6079.87Porphobilinogen deaminase, chloroplastic OS=Pisum ... [more]
HEM3_ORYSJ6.265e-5473.65Porphobilinogen deaminase, chloroplastic OS=Oryza ... [more]
HEM3_PARDP2.681e-3760.31Porphobilinogen deaminase OS=Paracoccus denitrific... [more]
HEM3_NITWN1.054e-3361.24Porphobilinogen deaminase OS=Nitrobacter winograds... [more]
HEM3_NITHX2.349e-3362.02Porphobilinogen deaminase OS=Nitrobacter hamburgen... [more]
HEM3_AGRT51.289e-3154.62Porphobilinogen deaminase OS=Agrobacterium tumefac... [more]
HEM3_RHILO4.898e-3154.96Porphobilinogen deaminase OS=Rhizobium loti GN=hem... [more]
HEM3_RHIME2.431e-3051.88Porphobilinogen deaminase OS=Rhizobium meliloti GN... [more]
HEM3_OCHA42.058e-2951.85Porphobilinogen deaminase OS=Ochrobactrum anthropi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31009H04EF AbioticL1 Citrus clementina cDNA clone C31009H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869225 ID=FC869225; Name=FC869225; organism=Citrus clementina; type=EST; length=756bp
GGAAACCAAAACATTACCAATCTCCGCTTCTAACTCGCTTTCTTCTTTTC
TTCTTTCATAAATAATTAGCACACTGTCTGTCCCCGTCTCTGTTTCTGAT
ACTGGGCAGTCATCATTGTTGTTGTGTGTCAATGGAGAGTTTGAGTTTAG
CAGCTTCTTCTCTTTGTACAAGCCGGGGTGGCCCCATGGAGCGCCATTGC
TATCCAGGGTCGGTCTCCCTTGTTGGGTTCTCTTCGCCACGCCTCAAGAC
TCCGTCTTTTCCAAAGAGTTTGAAGAAACGCAGTTTTGGGCTTGTAAGAG
CCTCTGCTGCTGTTGAAACCAAGGTTGCAATCATCAGAATTGGCACCAGA
GGAAGCCCTCTGGCACTTGCTCAGGCTCATGAGACGCGAAACAAACTCAT
GGCTTTGCATCCAGAGCTAGCTCAAGAGGGGGCGATTCAAATTGTAATAA
TAAAGACAACTGGTGATAAGATACTAAGTCAACCACTTGCAGACATTGGT
GGGAAGGGCTTGTTCACCAAAGAAATAGACGAGGCGCTGATAAATAGTCA
AATTGACATCGCCGTGCACTCGATGAAAGATGTTCCAACATATTTACCAG
AGAAGACCATTCTACCTTGCAACCTTCAGCGGGAGGATGTCCGAGATGCA
TTTATTTCGTTGAGTGCAGCCTCTTTAGCAGAACTACCAGCAGGAAGCAT
TGTTGGTACTGCTTCACTTAGAAGAAGTCTCAAATACTCCATAGATATCC
ATCATT
back to top