FC869226

Overview
NameFC869226
Unique NameFC869226
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15153 contig Ccv1_Contig15153:63..762. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869226 vs. ExPASy Swiss-Prot
Match: EF1G2_ORYSJ (Elongation factor 1-gamma 2 OS=Oryza sativa subsp. japonica GN=Os02g0220500 PE=2 SV=2)

HSP 1 Score: 322.013 bits (824), Expect = 1.903e-87
Identity = 152/197 (77.16%), Postives = 172/197 (87.31%), Query Frame = 1
Query:   67 MALVLHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLYGSSLIDYAHVEQWMDFSAMEIDANISRWVYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKLIMTKSFTSEFPHVERYFWTVANPP 657
            MALVLH G  NKN FK LIAAEY+GV+V+L +NF+MGV+NK+PEFLKMNP+GK+PVLETPDGPVFESNAIARYV R KADN LYGSSLI+YAH+EQW DFSA E+DANI +W+YPRLG   Y+ ++EE A+AALKR+L ALN HLASNTYLVGHSVTLADIVM CNLY GF  IMTKSFTSEFPHVERYFWT+ N P
Sbjct:    1 MALVLHAGSGNKNAFKALIAAEYSGVKVELVKNFQMGVSNKTPEFLKMNPIGKIPVLETPDGPVFESNAIARYVTRSKADNPLYGSSLIEYAHIEQWNDFSATEVDANIGKWLYPRLGIAPYVAVSEEAAIAALKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYMGFARIMTKSFTSEFPHVERYFWTMVNQP 197          
BLAST of FC869226 vs. ExPASy Swiss-Prot
Match: EF1G3_ORYSJ (Elongation factor 1-gamma 3 OS=Oryza sativa subsp. japonica GN=Os06g0571400 PE=2 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.363e-85
Identity = 150/197 (76.14%), Postives = 171/197 (86.80%), Query Frame = 1
Query:   67 MALVLHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLYGSSLIDYAHVEQWMDFSAMEIDANISRWVYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKLIMTKSFTSEFPHVERYFWTVANPP 657
            MALVLH G  NKN FK LIAAEY GV+V+L +NFEMGV+NK+PEFLKMNPLGK+PVLETP+G VFESNAIARYVARLK ++ L GSSLIDY+H+EQWMDFSA E+DANI RW+YPRLG+  Y+P+ EE A+ +LKR+L ALN HLASNTYLVGHSVTLADIVM CNLYYGF  I+ KSFTSEFPHVERYFWT+ N P
Sbjct:    1 MALVLHCGSGNKNAFKALIAAEYTGVKVELTKNFEMGVSNKTPEFLKMNPLGKIPVLETPEGAVFESNAIARYVARLKDNSSLCGSSLIDYSHIEQWMDFSATEVDANIGRWLYPRLGFGPYVPVLEEFAITSLKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYYGFVRILIKSFTSEFPHVERYFWTMVNQP 197          
BLAST of FC869226 vs. ExPASy Swiss-Prot
Match: EF1G1_ORYSJ (Elongation factor 1-gamma 1 OS=Oryza sativa subsp. japonica GN=Os02g0220600 PE=2 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.363e-85
Identity = 147/197 (74.62%), Postives = 173/197 (87.82%), Query Frame = 1
Query:   67 MALVLHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLYGSSLIDYAHVEQWMDFSAMEIDANISRWVYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKLIMTKSFTSEFPHVERYFWTVANPP 657
            MALVLH    NKN FK LIAAEY+GV+V+LA+NF+MGV+NK+PE+LKMNP+GKVP+LETPDGPVFESNAIARYV R K+DN LYGSSLI+YAH+EQW+DFSA E+DAN  +W++PRLG+  Y+ ++EE A+AALKR+L ALN HLASNTYLVGHSVTLADIVM CNLY GF  IMTK+FTSEFPHVERYFWT+ N P
Sbjct:    1 MALVLHTFDGNKNAFKALIAAEYSGVKVELAKNFQMGVSNKTPEYLKMNPIGKVPILETPDGPVFESNAIARYVTRSKSDNPLYGSSLIEYAHIEQWIDFSATEVDANTGKWLFPRLGFAPYVAVSEEAAIAALKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYMGFARIMTKNFTSEFPHVERYFWTMVNQP 197          
BLAST of FC869226 vs. ExPASy Swiss-Prot
Match: EF1G_PRUAV (Elongation factor 1-gamma OS=Prunus avium PE=2 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 1.508e-84
Identity = 147/198 (74.24%), Postives = 170/198 (85.86%), Query Frame = 1
Query:   67 MALVLHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLYGSSLIDYAHVEQWMDFSAMEIDANISRWVYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKLIMTKSFTSEFPHVERYFWTVANPPK 660
            MALVLH G+ NKN FK LI AEY GV+V+LA +FEMGVTNK+PE+LK+NP+GKVP+LETPDGP+FESNAIARYVARLKADN L GSSLIDYAH+EQW+DF ++EIDANI  W  PR GY  Y+P AEE A++ALKRAL ALN HLASNTYLVGH VTLADI++ CNL++GF  +M KSFTSEFPHVERYFWT+ N PK
Sbjct:    1 MALVLHAGKTNKNAFKTLIVAEYTGVKVELAPDFEMGVTNKTPEYLKLNPIGKVPLLETPDGPIFESNAIARYVARLKADNPLIGSSLIDYAHIEQWIDFGSLEIDANIISWFRPRFGYAVYLPPAEEAAISALKRALGALNTHLASNTYLVGHFVTLADIIVTCNLFFGFTKLMIKSFTSEFPHVERYFWTLVNQPK 198          
BLAST of FC869226 vs. ExPASy Swiss-Prot
Match: EF1G2_ARATH (Probable elongation factor 1-gamma 2 OS=Arabidopsis thaliana GN=At1g57720 PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 3.976e-77
Identity = 136/198 (68.69%), Postives = 164/198 (82.83%), Query Frame = 1
Query:   67 MALVLHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLYGSSLIDYAHVEQWMDFSAMEIDANISRWVYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKLIMTKSFTSEFPHVERYFWTVANPPK 660
            MALV+H  + NK   K LIAAEYAGV+++ + +F+MGVTNKSPEFLKMNP+GKVPVLETP+GP+FESNAIARYV+R   DN L GSSLI+YAH+EQW+DFS++EIDAN+ +W  PR+GY  +   AEE A++ALKR L+ALN HLASNT+LVGHSVTLADIV ICNL  GF  +MTK FTS FPHVERYFWT+ N P+
Sbjct:    1 MALVMHTYKGNKGANKALIAAEYAGVKIEESADFQMGVTNKSPEFLKMNPIGKVPVLETPEGPIFESNAIARYVSRKNGDNSLNGSSLIEYAHIEQWIDFSSLEIDANMLKWFAPRMGYAPFSAPAEEAAISALKRGLEALNTHLASNTFLVGHSVTLADIVTICNLNLGFATVMTKKFTSAFPHVERYFWTMVNQPE 198          
BLAST of FC869226 vs. ExPASy Swiss-Prot
Match: EF1G1_ARATH (Probable elongation factor 1-gamma 1 OS=Arabidopsis thaliana GN=At1g09640 PE=2 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.511e-76
Identity = 136/197 (69.04%), Postives = 161/197 (81.73%), Query Frame = 1
Query:   67 MALVLHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLYGSSLIDYAHVEQWMDFSAMEIDANISRWVYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKLIMTKSFTSEFPHVERYFWTVANPP 657
            MALVLH  + NK+  K LIAAEY GV++ +  +F+MGVTNK+P FLKMNP+GKVPVLETP+G VFESNAIARYV+RL  DN L GSSLI+YA +EQW+DFS++EI A+I RW  PR+G+M Y   AEEGA++ LKRALDALN HL SNTYLVGHS+TLADI+ +CNL  GF  +MTK FTSEFPHVERYFWTV N P
Sbjct:    1 MALVLHTYKGNKSAEKALIAAEYVGVQIDVPSDFQMGVTNKTPAFLKMNPIGKVPVLETPEGSVFESNAIARYVSRLNGDNSLNGSSLIEYAQIEQWIDFSSLEIYASILRWFGPRMGFMPYSAPAEEGAISTLKRALDALNTHLTSNTYLVGHSITLADIITVCNLNLGFATVMTKKFTSEFPHVERYFWTVVNQP 197          
BLAST of FC869226 vs. ExPASy Swiss-Prot
Match: EF1GA_XENLA (Elongation factor 1-gamma-A OS=Xenopus laevis GN=eef1g-A PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.996e-36
Identity = 86/198 (43.43%), Postives = 120/198 (60.61%), Query Frame = 1
Query:   79 LHVGQENKNGFKGLIAAEYAGVEVKLAEN---FEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLYGSSLIDYAHVEQWMDFSAMEIDANISRWVYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKLIMTKSFTSEFPHVERYFWTVANPPK 660
            L+   +N   +K LIAA+Y+G  +K+A +   F+ GVTNK+PEFLK  PLGKVP  E  DG  +FES+AIA YV     +++L G++ +  A V QW+ FS   I    S WV+P LG MQY   A E A   +K  L  L+ HL + T+LVG  +TLADI + C+L + +K ++  SF   F +V R+F T  N P+
Sbjct:    6 LYTYPDNWRAYKPLIAAQYSGFPIKVASSAPEFQFGVTNKTPEFLKKFPLGKVPAFEGKDGFCLFESSAIAHYVG----NDELRGTTRLHQAQVIQWVSFSDSHIVPPASAWVFPTLGIMQYNKQATEQAKEGIKTVLGVLDSHLQTRTFLVGERITLADITVTCSLLWLYKQVLEPSFRQPFGNVTRWFVTCVNQPE 199          
BLAST of FC869226 vs. ExPASy Swiss-Prot
Match: EF1G_RABIT (Elongation factor 1-gamma OS=Oryctolagus cuniculus GN=EEF1G PE=2 SV=3)

HSP 1 Score: 149.443 bits (376), Expect = 1.690e-35
Identity = 85/198 (42.93%), Postives = 117/198 (59.09%), Query Frame = 1
Query:   79 LHVGQENKNGFKGLIAAEYAGVEVKLAE---NFEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLYGSSLIDYAHVEQWMDFSAMEIDANISRWVYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKLIMTKSFTSEFPHVERYFWTVANPPK 660
            L+   EN   FK LIAA+Y+G +V++     +F  G TN++PEFL+  P GKVP  E  DG  VFESNAIA YV+    + +L GS+    A V QW+ F+  +I    S WV+P LG M +   A E A   +KR L  L+ HL + T+LVG  VTLADI ++C L + +K ++  SF   FP+  R+F T  N P+
Sbjct:    6 LYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVKRILGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSFRQAFPNTNRWFLTCINQPQ 199          
BLAST of FC869226 vs. ExPASy Swiss-Prot
Match: EF1G_MOUSE (Elongation factor 1-gamma OS=Mus musculus GN=Eef1g PE=1 SV=3)

HSP 1 Score: 149.443 bits (376), Expect = 1.690e-35
Identity = 85/198 (42.93%), Postives = 117/198 (59.09%), Query Frame = 1
Query:   79 LHVGQENKNGFKGLIAAEYAGVEVKLAE---NFEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLYGSSLIDYAHVEQWMDFSAMEIDANISRWVYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKLIMTKSFTSEFPHVERYFWTVANPPK 660
            L+   EN   FK LIAA+Y+G +V++     +F  G TN++PEFL+  P GKVP  E  DG  VFESNAIA YV+    + +L GS+    A V QW+ F+  +I    S WV+P LG M +   A E A   +KR L  L+ HL + T+LVG  VTLADI ++C L + +K ++  SF   FP+  R+F T  N P+
Sbjct:    6 LYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVKRILGLLDTHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSFRQAFPNTNRWFLTCINQPQ 199          
BLAST of FC869226 vs. ExPASy Swiss-Prot
Match: EF1G_RAT (Elongation factor 1-gamma OS=Rattus norvegicus GN=Eef1g PE=2 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 2.207e-35
Identity = 84/198 (42.42%), Postives = 117/198 (59.09%), Query Frame = 1
Query:   79 LHVGQENKNGFKGLIAAEYAGVEVKLAE---NFEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLYGSSLIDYAHVEQWMDFSAMEIDANISRWVYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKLIMTKSFTSEFPHVERYFWTVANPPK 660
            L+   EN   FK LIAA+Y+G ++++     +F  G TN++PEFL+  P GKVP  E  DG  VFESNAIA YV+    + +L GS+    A V QW+ F+  +I    S WV+P LG M +   A E A   +KR L  L+ HL + T+LVG  VTLADI ++C L + +K ++  SF   FP+  R+F T  N P+
Sbjct:    6 LYTYPENWRAFKALIAAQYSGAQIRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVKRILGLLDTHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSFRQAFPNTNRWFLTCINQPQ 199          
The following BLAST results are available for this feature:
BLAST of FC869226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
EF1G2_ORYSJ1.903e-8777.16Elongation factor 1-gamma 2 OS=Oryza sativa subsp.... [more]
EF1G3_ORYSJ1.363e-8576.14Elongation factor 1-gamma 3 OS=Oryza sativa subsp.... [more]
EF1G1_ORYSJ1.363e-8574.62Elongation factor 1-gamma 1 OS=Oryza sativa subsp.... [more]
EF1G_PRUAV1.508e-8474.24Elongation factor 1-gamma OS=Prunus avium PE=2 SV=... [more]
EF1G2_ARATH3.976e-7768.69Probable elongation factor 1-gamma 2 OS=Arabidopsi... [more]
EF1G1_ARATH1.511e-7669.04Probable elongation factor 1-gamma 1 OS=Arabidopsi... [more]
EF1GA_XENLA1.996e-3643.43Elongation factor 1-gamma-A OS=Xenopus laevis GN=e... [more]
EF1G_RABIT1.690e-3542.93Elongation factor 1-gamma OS=Oryctolagus cuniculus... [more]
EF1G_MOUSE1.690e-3542.93Elongation factor 1-gamma OS=Mus musculus GN=Eef1g... [more]
EF1G_RAT2.207e-3542.42Elongation factor 1-gamma OS=Rattus norvegicus GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31009H05EF AbioticL1 Citrus clementina cDNA clone C31009H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869226 ID=FC869226; Name=FC869226; organism=Citrus clementina; type=EST; length=700bp
CTGTGGCCTTTGAGTCGAACGCTCGCATTCATCTGTAATTTGAGCGAATC
GTTTCTCCGTTAAGCCATGGCTCTGGTCTTGCATGTTGGGCAGGAAAACA
AAAATGGATTCAAAGGACTCATTGCTGCTGAGTACGCTGGTGTGGAAGTC
AAATTGGCTGAGAATTTTGAGATGGGTGTCACTAATAAATCCCCTGAATT
TTTGAAGATGAACCCTCTTGGGAAGGTTCCTGTGTTGGAGACACCTGATG
GTCCGGTTTTTGAGAGCAATGCCATTGCCCGTTATGTTGCACGTCTGAAA
GCTGACAATCAACTATATGGTTCTTCTCTGATCGATTATGCTCATGTTGA
GCAGTGGATGGATTTTTCTGCCATGGAGATTGATGCTAATATCTCCAGGT
GGGTATATCCAAGACTTGGATATATGCAATACATTCCTCTGGCTGAGGAA
GGTGCTGTTGCCGCACTGAAGAGAGCGTTGGATGCTTTGAACATTCATTT
GGCTTCAAATACGTACTTGGTTGGCCATTCTGTCACCCTGGCTGACATTG
TCATGATATGCAATTTATATTATGGATTTAAGCTCATCATGACGAAGAGT
TTCACCTCTGAGTTTCCCCATGTTGAGAGATACTTTTGGACCGTGGCCAA
CCCACCAAAAAATTAGAAGTTTTGGTTGATTTTAAGCAGCCGAATCTGTC
back to top