FC869228 | Citrus Genome Database

Overview


Name	FC869228
Unique Name	FC869228
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	489

Libraries


Library Name	Type
AbioticL1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig9336	contig	Ccv1_Contig9336:8..496.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of FC869228 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.262e-34
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 2

Query:   62 MQIFVKTLTGKTITLEVESSNTIDNVKAKIQDKEGIPPDQQCLFFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 289
            MQIFVKTLTGKTITLEVESS+TIDNVKAKIQDKEGIPPDQQ L FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 128.642 bits (322), Expect = 1.418e-29
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 2

Query:  290 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAGYNIQKEST 487
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA YNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66

BLAST of FC869228 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.262e-34
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 2

Query:   62 MQIFVKTLTGKTITLEVESSNTIDNVKAKIQDKEGIPPDQQCLFFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 289
            MQIFVKTLTGKTITLEVESS+TIDNVKAKIQDKEGIPPDQQ L FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 128.642 bits (322), Expect = 1.418e-29
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 2

Query:  290 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAGYNIQKEST 487
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA YNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66

BLAST of FC869228 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.262e-34
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 2

Query:   62 MQIFVKTLTGKTITLEVESSNTIDNVKAKIQDKEGIPPDQQCLFFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 289
            MQIFVKTLTGKTITLEVESS+TIDNVKAKIQDKEGIPPDQQ L FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 128.642 bits (322), Expect = 1.418e-29
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 2

Query:  290 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAGYNIQKEST 487
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA YNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66

BLAST of FC869228 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.262e-34
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 2

Query:   62 MQIFVKTLTGKTITLEVESSNTIDNVKAKIQDKEGIPPDQQCLFFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 289
            MQIFVKTLTGKTITLEVESS+TIDNVKAKIQDKEGIPPDQQ L FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 128.642 bits (322), Expect = 1.418e-29
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 2

Query:  290 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAGYNIQKEST 487
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA YNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66

BLAST of FC869228 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.262e-34
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 2

Query:   62 MQIFVKTLTGKTITLEVESSNTIDNVKAKIQDKEGIPPDQQCLFFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 289
            MQIFVKTLTGKTITLEVESS+TIDNVKAKIQDKEGIPPDQQ L FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 128.642 bits (322), Expect = 1.418e-29
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 2

Query:  290 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAGYNIQKEST 487
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA YNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66

BLAST of FC869228 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.262e-34
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 2

Query:   62 MQIFVKTLTGKTITLEVESSNTIDNVKAKIQDKEGIPPDQQCLFFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 289
            MQIFVKTLTGKTITLEVESS+TIDNVKAKIQDKEGIPPDQQ L FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 128.642 bits (322), Expect = 1.418e-29
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 2

Query:  290 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAGYNIQKEST 487
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA YNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66

BLAST of FC869228 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.262e-34
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 2

Query:   62 MQIFVKTLTGKTITLEVESSNTIDNVKAKIQDKEGIPPDQQCLFFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 289
            MQIFVKTLTGKTITLEVESS+TIDNVKAKIQDKEGIPPDQQ L FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 128.642 bits (322), Expect = 1.418e-29
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 2

Query:  290 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAGYNIQKEST 487
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA YNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66

BLAST of FC869228 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.262e-34
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 2

Query:   62 MQIFVKTLTGKTITLEVESSNTIDNVKAKIQDKEGIPPDQQCLFFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 289
            MQIFVKTLTGKTITLEVESS+TIDNVKAKIQDKEGIPPDQQ L FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 128.642 bits (322), Expect = 1.418e-29
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 2

Query:  290 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAGYNIQKEST 487
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA YNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66

BLAST of FC869228 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.262e-34
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 2

Query:   62 MQIFVKTLTGKTITLEVESSNTIDNVKAKIQDKEGIPPDQQCLFFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 289
            MQIFVKTLTGKTITLEVESS+TIDNVKAKIQDKEGIPPDQQ L FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 128.642 bits (322), Expect = 1.418e-29
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 2

Query:  290 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAGYNIQKEST 487
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA YNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66

BLAST of FC869228 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.262e-34
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 2

Query:   62 MQIFVKTLTGKTITLEVESSNTIDNVKAKIQDKEGIPPDQQCLFFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 289
            MQIFVKTLTGKTITLEVESS+TIDNVKAKIQDKEGIPPDQQ L FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 128.642 bits (322), Expect = 1.418e-29
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 2

Query:  290 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAGYNIQKEST 487
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA YNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66

The following BLAST results are available for this feature:

BLAST of FC869228 vs. ExPASy Swiss-Prot

BLAST of FC869228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94


Match Name	E-value	Identity	Description
UBIQ_WHEAT	3.262e-34	96.05	Ubiquitin OS=Triticum aestivum PE=3 SV=1	[more]
UBIQ_SOYBN	3.262e-34	96.05	Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1	[more]
UBIQ_SOLTU	3.262e-34	96.05	Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1	[more]
UBIQ_SOLLC	3.262e-34	96.05	Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=...	[more]
UBIQ_PETCR	3.262e-34	96.05	Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3...	[more]
UBIQ_PEA	3.262e-34	96.05	Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1	[more]
UBIQ_ORYSJ	3.262e-34	96.05	Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ...	[more]
UBIQ_NICSY	3.262e-34	96.05	Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE...	[more]
UBIQ_MAIZE	3.262e-34	96.05	Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1	[more]
UBIQ_LUPPO	3.262e-34	96.05	Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	C31009H08EF AbioticL1 Citrus clementina cDNA clone C31009H08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC869228 ID=FC869228; Name=FC869228; organism=Citrus clementina; type=EST; length=489bp
TCGGGTTATTCGATATCCTCAACAAATCTCTCCAATTCTCTCGCTAAGAA
ACTTTTAAAAGATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATT
ACTCTCGAAGTCGAGAGCTCCAACACCATCGACAACGTCAAGGCCAAGAT
CCAAGACAAGGAAGGAATCCCTCCGGACCAGCAGTGTCTGTTCTTCGCCG
GAAAACAGCTCGAAGACGGCCGCACCTTGGCCGATTACAATATCCAAAAG
GAATCGACGCTTCATCTGGTGCTTCGTCTCCGTGGAGGCATGCAGATCTT
CGTGAAAACCCTAACCGGCAAGACCATTACTCTCGAAGTTGAGAGCTCCG
ACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCG
CCGGACCAGCAGAGGCTGATCTTCGCCGGAAAGCAACTCGAGGACGGCCG
CACCTTGGCCGGATACAATATCCAGAAGGAATCAACTCT