FC869232

Overview
NameFC869232
Unique NameFC869232
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length534
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869232 vs. ExPASy Swiss-Prot
Match: FRS5_ARATH (Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.904e-16
Identity = 48/132 (36.36%), Postives = 69/132 (52.27%), Query Frame = 1
Query:  166 HETGDDELSDH--FNGSDNFTQPSDGMFPLTSEST------EPYIGMEFDSAEDAREFYEMYGRRVGFTIRNNRTRRSLKDNSIIGREYVCSKEGF-HTGKCTNRGSRVLLPRPATREGCNAMLRIAAKDGG 534
            H   DD++ D       +     S   FP   E        EPY G+EF+S E A+ FY  Y RR+GF+ R + +RRS +D +II R++VC+KEGF +  +   +   +  PR  TR GC A L +  +D G
Sbjct:   31 HALDDDDMLDSPIMPCGNGLVGNSGNYFPNQEEEACDLLDLEPYDGLEFESEEAAKAFYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEKRTKDREIKRPRTITRVGCKASLSVKMQDSG 162          
BLAST of FC869232 vs. ExPASy Swiss-Prot
Match: FRS12_ARATH (Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana GN=FRS12 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.797e-14
Identity = 37/90 (41.11%), Postives = 50/90 (55.56%), Query Frame = 1
Query:  265 EPYIGMEFDSAEDAREFYEMYGRRVGFTIRNNRTRRSLKDNSIIGREYVCSKEGFHTGKCTNRGSRVLLPRPATREGCNAMLRIAAKDGG 534
            EPY+G+EFD+AE+AREFY  Y  R GF +R  +  RS  D ++  R +VCSKEGF                  +R GC A +R+  +D G
Sbjct:   42 EPYVGLEFDTAEEAREFYNAYAARTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQLN---------------SRTGCTAFIRVQRRDTG 116          

HSP 2 Score: 68.9366 bits (167), Expect = 1.697e-11
Identity = 37/91 (40.66%), Postives = 49/91 (53.85%), Query Frame = 1
Query:  262 TEPYIGMEFDSAEDAREFYEMYGRRVGFTIRNNRTRRSLKDNSIIGREYVCSKEGFHTGKCTNRGSRVLLPRPATREGCNAMLRIAAKDGG 534
            TEPY G+EF SA +A +FY+ Y   VGF +R  +  RS  D SI  R +VCS+EGF               +  +R GC A +RI  +D G
Sbjct:  209 TEPYAGLEFGSANEACQFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSREGF---------------QHPSRMGCGAYMRIKRQDSG 284          
BLAST of FC869232 vs. ExPASy Swiss-Prot
Match: FRS7_ARATH (Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=FRS7 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.368e-13
Identity = 35/90 (38.89%), Postives = 50/90 (55.56%), Query Frame = 1
Query:  265 EPYIGMEFDSAEDAREFYEMYGRRVGFTIRNNRTRRSLKDNSIIGREYVCSKEGFHTGKCTNRGSRVLLPRPATREGCNAMLRIAAKDGG 534
            EPY+G+EFD+AE+AR++Y  Y  R GF +R  +  RS  D ++  R +VCSKEGF                  +R GC A +R+  +D G
Sbjct:   27 EPYVGLEFDTAEEARDYYNSYATRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQLN---------------SRTGCPAFIRVQRRDTG 101          

HSP 2 Score: 73.1738 bits (178), Expect = 8.999e-13
Identity = 43/109 (39.45%), Postives = 57/109 (52.29%), Query Frame = 1
Query:  208 SDNFTQPSDGMFPLTSESTEPYIGMEFDSAEDAREFYEMYGRRVGFTIRNNRTRRSLKDNSIIGREYVCSKEGFHTGKCTNRGSRVLLPRPATREGCNAMLRIAAKDGG 534
            SD  TQP         ++TEPY G+EF+SA +A +FY+ Y   VGF +R  +  RS  D SI  R +VCSKEGF               +  +R GC A +RI  +D G
Sbjct:  179 SDGQTQP---------KATEPYAGLEFNSANEACQFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSKEGF---------------QHPSRMGCGAYMRIKRQDSG 263          
The following BLAST results are available for this feature:
BLAST of FC869232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
FRS5_ARATH3.904e-1636.36Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis tha... [more]
FRS12_ARATH2.797e-1441.11Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis th... [more]
FRS7_ARATH2.368e-1338.89Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionC31010A01EF AbioticL1 Citrus clementina cDNA clone C31010A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869232 ID=FC869232; Name=FC869232; organism=Citrus clementina; type=EST; length=534bp
GGAGTCCCCGATGCGAAGTGTCGAAACAGTTTAGAAAACACACAAGAATT
CAGAAACAATTCCAGTAACATACAATAAAATAGGGTTGTGATGGGAAGCA
CCTCTGGTGAACAATTTGATTTGGGCAGAAATTATAGACAATGGTTAGCT
GAAACTTTTGATGGTCATGAAACAGGAGATGATGAATTATCGGATCATTT
TAATGGAAGTGATAATTTCACCCAACCATCTGATGGGATGTTTCCATTAA
CTTCTGAATCTACAGAGCCATATATTGGTATGGAGTTTGACTCAGCAGAG
GATGCAAGGGAATTTTACGAGATGTATGGAAGGCGTGTGGGGTTTACGAT
ACGAAATAATCGTACACGTCGGTCTCTAAAAGATAATTCAATAATTGGTC
GAGAATATGTTTGCTCTAAAGAGGGATTTCATACAGGAAAGTGCACAAAT
AGAGGTAGCAGAGTTCTCCTGCCACGGCCTGCCACGAGGGAGGGGTGCAA
TGCCATGCTGAGAATAGCTGCAAAGGATGGAGGG
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