FC869236

Overview
NameFC869236
Unique NameFC869236
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10686 contig Ccv1_Contig10686:248..984. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869236 vs. ExPASy Swiss-Prot
Match: PP1R8_MOUSE (Nuclear inhibitor of protein phosphatase 1 OS=Mus musculus GN=Ppp1r8 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.041e-18
Identity = 45/113 (39.82%), Postives = 75/113 (66.37%), Query Frame = 2
Query:  341 PDWAIEPRSSVYYLDVLKDGEILDRINLDRRRH-IFGRQFQTCDFVLDHQSISRQHAAVIPHKN-GSIYVIDLGSAHGTFVANERLTKETPVELEVGQSLRFAASTRTYILRK 673
            P WA +P   ++ LDV+K  ++++++ +D +++ +FGR    CDF +DHQS SR HAA++ HK+   +++IDL S HGTF+ + RL    P ++ +  ++ F ASTR Y LR+
Sbjct:   17 PTWAGKPPPGLH-LDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTRAYTLRE 128          
BLAST of FC869236 vs. ExPASy Swiss-Prot
Match: PP1R8_HUMAN (Nuclear inhibitor of protein phosphatase 1 OS=Homo sapiens GN=PPP1R8 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.041e-18
Identity = 45/113 (39.82%), Postives = 75/113 (66.37%), Query Frame = 2
Query:  341 PDWAIEPRSSVYYLDVLKDGEILDRINLDRRRH-IFGRQFQTCDFVLDHQSISRQHAAVIPHKN-GSIYVIDLGSAHGTFVANERLTKETPVELEVGQSLRFAASTRTYILRK 673
            P WA +P   ++ LDV+K  ++++++ +D +++ +FGR    CDF +DHQS SR HAA++ HK+   +++IDL S HGTF+ + RL    P ++ +  ++ F ASTR Y LR+
Sbjct:   17 PTWAGKPPPGLH-LDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTRAYTLRE 128          
BLAST of FC869236 vs. ExPASy Swiss-Prot
Match: PP1R8_BOVIN (Nuclear inhibitor of protein phosphatase 1 OS=Bos taurus GN=PPP1R8 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.041e-18
Identity = 45/113 (39.82%), Postives = 75/113 (66.37%), Query Frame = 2
Query:  341 PDWAIEPRSSVYYLDVLKDGEILDRINLDRRRH-IFGRQFQTCDFVLDHQSISRQHAAVIPHKN-GSIYVIDLGSAHGTFVANERLTKETPVELEVGQSLRFAASTRTYILRK 673
            P WA +P   ++ LDV+K  ++++++ +D +++ +FGR    CDF +DHQS SR HAA++ HK+   +++IDL S HGTF+ + RL    P ++ +  ++ F ASTR Y LR+
Sbjct:   17 PTWAGKPPPGLH-LDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTRAYTLRE 128          
BLAST of FC869236 vs. ExPASy Swiss-Prot
Match: NADAP_HUMAN (Kanadaptin OS=Homo sapiens GN=SLC4A1AP PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.869e-12
Identity = 45/124 (36.29%), Postives = 63/124 (50.81%), Query Frame = 2
Query:  332 WQPPDWAIEPRSSVYYLDVLKDGEILDRINLDRRRHIFGRQFQTCDFVLDHQSISRQHAAVIPHK----------NG-SIYVIDLGSAHGTFVANERLTKETPVELEVGQSLRFAASTRTYILR 670
            +Q P W   P ++ Y L+ LK G IL   +L    +    +   CD  L+H S+SR HA V+ H+          NG   Y+ DLGS HGTF+   R+   T   + VG  +RF  STR +IL+
Sbjct:  154 YQEPPWG-GPATAPYSLETLKGGTILGTRSLKGTSYCLFGRLSGCDVCLEHPSVSRYHA-VLQHRASGPDGECDSNGPGFYLYDLGSTHGTFLNKTRIPPRTYCRVHVGHVVRFGGSTRLFILQ 275          
The following BLAST results are available for this feature:
BLAST of FC869236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PP1R8_MOUSE2.041e-1839.82Nuclear inhibitor of protein phosphatase 1 OS=Mus ... [more]
PP1R8_HUMAN2.041e-1839.82Nuclear inhibitor of protein phosphatase 1 OS=Homo... [more]
PP1R8_BOVIN2.041e-1839.82Nuclear inhibitor of protein phosphatase 1 OS=Bos ... [more]
NADAP_HUMAN4.869e-1236.29Kanadaptin OS=Homo sapiens GN=SLC4A1AP PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC31010A05EF AbioticL1 Citrus clementina cDNA clone C31010A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869236 ID=FC869236; Name=FC869236; organism=Citrus clementina; type=EST; length=737bp
ATCTGGCCGGGGGAGGGAAGGGGGGGAAACGGCTCAGAAAATAAACCCAG
CATAAGGTTACGTGTAGAGAATGTTCGGAAGAGCCGGTCTTGATCGATTC
AAGAAAGCTCAATCCTTGGAACCATTTTCAGTTGCTGTTAATTCTGCTGC
CAAAACTGCTTCAGAAGCTGTTACTAATCCTTCAACGCAGTGTTTACATT
CACAAAGTTACCAACAACAACCTCAGTATCAGAATCAACACCAGATTTCT
CAAAACTCCATCAAACAGGAGGCTTCGCTGTCTGTTGGGAAAGCACAGCA
GGTGACCCAGATTGGAGGCGGGCAATCCACTTGGCAACCACCAGACTGGG
CAATTGAGCCTCGCTCCAGTGTCTACTATCTTGATGTTTTGAAGGATGGT
GAGATTCTTGACCGGATTAATTTGGATAGACGGAGGCATATTTTTGGGAG
GCAGTTTCAAACGTGTGATTTTGTTCTTGATCATCAGTCCATTTCACGCC
AGCATGCCGCCGTCATTCCTCACAAGAATGGAAGCATATACGTAATTGAT
CTGGGATCAGCTCATGGTACCTTTGTTGCCAATGAGCGTTTGACCAAAGA
GACTCCAGTTGAGCTTGAAGTTGGGCAGTCTTTGAGATTCGCTGCGTCAA
CAAGAACATATATTTTGAGAAAGATACTGATGCTCTTTTTGCTCGTCCTC
CACAGCTACAGAGATCAATTTACCACGCCTCCTGATC
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