FC869237

Overview
NameFC869237
Unique NameFC869237
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9487 contig Ccv1_Contig9487:1..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869237 vs. ExPASy Swiss-Prot
Match: ODBB_DICDI (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Dictyostelium discoideum GN=bkdB PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.598e-62
Identity = 112/171 (65.50%), Postives = 133/171 (77.78%), Query Frame = 1
Query:  217 GSGKSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXXRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVV 729
            G  + +NL+ AIN  + IA++ D +A             RCT GL D++G SRVFNTPLCEQGI GFAIGLAA G   IAEIQFADYIFPAFDQIVNEAAK+RYRSG QF+CG LT+R+PYGAVGHGGHYHSQSPE++F H PGLKVVIP +P +AKGLLL+ IR+ +PV+
Sbjct:   44 GEKQKMNLFQAINNGMDIAMQKDSKAVVFGEDVGFGGVFRCTVGLRDKYGASRVFNTPLCEQGIAGFAIGLAAQGATPIAEIQFADYIFPAFDQIVNEAAKYRYRSGGQFDCGSLTIRSPYGAVGHGGHYHSQSPESYFGHTPGLKVVIPSTPIEAKGLLLASIREKDPVI 214          
BLAST of FC869237 vs. ExPASy Swiss-Prot
Match: ODBB_RAT (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Rattus norvegicus GN=Bckdhb PE=1 SV=3)

HSP 1 Score: 236.113 bits (601), Expect = 1.470e-61
Identity = 114/171 (66.67%), Postives = 128/171 (74.85%), Query Frame = 1
Query:  217 GSGKSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXXRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVV 729
            G  + +NL+ +I  AL  +L  DP A             RCT GL D++GK RVFNTPLCEQGIVGF IG+A  G  AIAEIQFADYIFPAFDQIVNEAAK+RYRSG+ FNCG LT+RAP+G VGHG  YHSQSPEAFF H PG+KVVIPRSP QAKGLLLSCI D NP +
Sbjct:   64 GQTQKMNLFQSITSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRAPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCI 234          
BLAST of FC869237 vs. ExPASy Swiss-Prot
Match: ODBB_MOUSE (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Mus musculus GN=Bckdhb PE=2 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 1.470e-61
Identity = 114/171 (66.67%), Postives = 128/171 (74.85%), Query Frame = 1
Query:  217 GSGKSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXXRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVV 729
            G  + +NL+ +I  AL  +L  DP A             RCT GL D++GK RVFNTPLCEQGIVGF IG+A  G  AIAEIQFADYIFPAFDQIVNEAAK+RYRSG+ FNCG LT+RAP+G VGHG  YHSQSPEAFF H PG+KVVIPRSP QAKGLLLSCI D NP +
Sbjct:   64 GQTQKMNLFQSITSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRAPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCI 234          
BLAST of FC869237 vs. ExPASy Swiss-Prot
Match: ODBB_BOVIN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Bos taurus GN=BCKDHB PE=1 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 2.507e-61
Identity = 112/171 (65.50%), Postives = 128/171 (74.85%), Query Frame = 1
Query:  217 GSGKSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXXRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVV 729
            G  + +NL+ A+  AL  +L  DP A             RCT GL D++GK RVFNTPLCEQGIVGF IG+A  G  AIAEIQFADYIFPAFDQIVNEAAK+RYRSG+ FNCG LT+R+P+G VGHG  YHSQSPEAFF H PG+KVV+PRSP QAKGLLLSCI D NP +
Sbjct:   66 GQTQKMNLFQAVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVVPRSPFQAKGLLLSCIEDKNPCI 236          
BLAST of FC869237 vs. ExPASy Swiss-Prot
Match: ODBB_HUMAN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Homo sapiens GN=BCKDHB PE=1 SV=2)

HSP 1 Score: 234.572 bits (597), Expect = 4.276e-61
Identity = 112/171 (65.50%), Postives = 128/171 (74.85%), Query Frame = 1
Query:  217 GSGKSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXXRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVV 729
            G  + +NL+ ++  AL  +L  DP A             RCT GL D++GK RVFNTPLCEQGIVGF IG+A  G  AIAEIQFADYIFPAFDQIVNEAAK+RYRSG+ FNCG LT+R+P+G VGHG  YHSQSPEAFF H PG+KVVIPRSP QAKGLLLSCI D NP +
Sbjct:   66 GQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCI 236          
BLAST of FC869237 vs. ExPASy Swiss-Prot
Match: ODBB_THET8 (2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0230 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.137e-36
Identity = 84/167 (50.30%), Postives = 102/167 (61.08%), Query Frame = 1
Query:  232 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXXRCTT-GLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVV 729
            + +  A+N+AL   +  DPR                 T GL  ++G  RV +TPL E  IVG A+G+AA G R +AEIQFADYIFP FDQ+V++ AK RYRSG QF    L VR P G    GGH+HSQSPEA F H  GLKVV   +P  AKGLL + IRD +PVV
Sbjct:    4 MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFT-APLVVRMPSGGGVRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVV 169          
BLAST of FC869237 vs. ExPASy Swiss-Prot
Match: ODBB_THET2 (2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C1756 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.137e-36
Identity = 84/167 (50.30%), Postives = 102/167 (61.08%), Query Frame = 1
Query:  232 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXXRCTT-GLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVV 729
            + +  A+N+AL   +  DPR                 T GL  ++G  RV +TPL E  IVG A+G+AA G R +AEIQFADYIFP FDQ+V++ AK RYRSG QF    L VR P G    GGH+HSQSPEA F H  GLKVV   +P  AKGLL + IRD +PVV
Sbjct:    4 MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFT-APLVVRMPSGGGVRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVV 169          
BLAST of FC869237 vs. ExPASy Swiss-Prot
Match: ODBB_BACSU (2-oxoisovalerate dehydrogenase subunit beta OS=Bacillus subtilis GN=bfmBAB PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.385e-35
Identity = 79/167 (47.31%), Postives = 105/167 (62.87%), Query Frame = 1
Query:  232 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVV 729
            ++   AIN A+   +E D R +             + T GL ++FG+ RV +TPL E  I G  IG A  G R IAE+QFAD+I PA +QI++EAAK RYRS N ++C  + VRAPYG   HG  YHSQS EA F + PGLK+V+P +P  AKGLL + +RD +PV+
Sbjct:    4 MSYIDAINLAMKEEMERDSRVFVLGEDVGRKGGVFKATAGLYEQFGEERVMDTPLAESAIAGVGIGAAMYGMRPIAEMQFADFIMPAVNQIISEAAKIRYRSNNDWSC-PIVVRAPYGGGVHGALYHSQSVEAIFANQPGLKIVMPSTPYDAKGLLKAAVRDEDPVL 169          
BLAST of FC869237 vs. ExPASy Swiss-Prot
Match: ODBB_PSEAE (2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas aeruginosa GN=bkdA2 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.875e-35
Identity = 76/168 (45.24%), Postives = 104/168 (61.90%), Query Frame = 1
Query:  229 SLNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVV 729
            S+ +  A+  A+ I LE D                 RCT GL  ++G SRVF+ P+ E GI+G A+G+ A G R + EIQFADY++PA DQ+++EAA+ RYRS   F    +TVR P G   +GG  HSQSPEA F  V GL+ V+P +P  AKGLL++CI + +PV+
Sbjct:   16 SMTMIQALRSAMDIMLERDDDVVVFGQDVGYFGGVFRCTEGLQKKYGTSRVFDAPISESGIIGAAVGMGAYGLRPVVEIQFADYVYPASDQLISEAARLRYRSAGDF-IVPMTVRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIACIENDDPVI 182          
BLAST of FC869237 vs. ExPASy Swiss-Prot
Match: ODBB_PSEPU (2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas putida GN=bkdA2 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.928e-34
Identity = 76/168 (45.24%), Postives = 102/168 (60.71%), Query Frame = 1
Query:  229 SLNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVV 729
            ++ +  A+  A+ + LE D                 RCT GL  ++GKSRVF+ P+ E GIVG A+G+ A G R + EIQFADY +PA DQIV+E A+ RYRS  +F    LT+R P G   +GG  HSQSPEA F  V GL+ V+P +P  AKGLL++ I   +PV+
Sbjct:    5 TMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEF-IAPLTLRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIECDDPVI 171          
The following BLAST results are available for this feature:
BLAST of FC869237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODBB_DICDI6.598e-6265.502-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_RAT1.470e-6166.672-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_MOUSE1.470e-6166.672-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_BOVIN2.507e-6165.502-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_HUMAN4.276e-6165.502-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_THET82.137e-3650.302-oxoisovalerate dehydrogenase subunit beta OS=The... [more]
ODBB_THET22.137e-3650.302-oxoisovalerate dehydrogenase subunit beta OS=The... [more]
ODBB_BACSU1.385e-3547.312-oxoisovalerate dehydrogenase subunit beta OS=Bac... [more]
ODBB_PSEAE6.875e-3545.242-oxoisovalerate dehydrogenase subunit beta OS=Pse... [more]
ODBB_PSEPU9.928e-3445.242-oxoisovalerate dehydrogenase subunit beta OS=Pse... [more]

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Properties
Property NameValue
Genbank descriptionC31010A06EF AbioticL1 Citrus clementina cDNA clone C31010A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869237 ID=FC869237; Name=FC869237; organism=Citrus clementina; type=EST; length=730bp
GCTTATTCTCAACTCCCTCAAATCCGAACTAAAAACATTTCAACGCAGAC
AAACGCACATGAATTCAATATTTGCAAACTCCACAACCAAAAATCTTGGC
GGAGATTTCACAATATGGCTTCTGGTTTGAGAAGATTTGTGGGTTCCCTT
TCACGGAGAAATCTTTCAACTGCTTGTGCGAACAAGCAGCTAATTCAACA
ACACGATGGGGGTGTTGGCAGTGGCAAGTCTTTGAATTTGTACTCTGCCA
TCAACCAGGCTCTTCATATTGCTTTGGAAACTGATCCACGTGCTTATGTG
TTTGGAGAAGATGTGGGCTTTGGTGGAGTCTTCCGATGCACGACAGGATT
AGCTGATCGATTTGGTAAAAGTCGGGTATTCAATACCCCTCTTTGTGAAC
AGGGCATCGTTGGGTTTGCCATTGGTCTGGCAGCTATGGGAAATCGAGCT
ATAGCTGAAATTCAATTTGCAGATTATATTTTTCCAGCTTTTGATCAGAT
TGTCAATGAAGCTGCTAAGTTCAGATACAGGAGTGGAAATCAATTTAATT
GTGGAGGATTAACAGTAAGAGCCCCTTACGGAGCTGTGGGCCATGGTGGA
CACTATCACTCGCAATCTCCTGAAGCTTTCTTTTGTCACGTTCCTGGTCT
CAAAGTGGTCATTCCTCGAAGCCCACGACAAGCAAAAGGATTATTGCTGT
CATGCATTCGTGATCCGAACCCTGTTGTCT
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