FC869240

Overview
NameFC869240
Unique NameFC869240
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length655
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3578 contig Ccv1_Contig3578:26..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869240 vs. ExPASy Swiss-Prot
Match: SUGT1_DICDI (Protein SUGT1 homolog OS=Dictyostelium discoideum GN=sugt1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.175e-18
Identity = 62/210 (29.52%), Postives = 96/210 (45.71%), Query Frame = 2
Query:   89 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE---------------TGELQKQPLETGPTNVVSTNNVQPAT---------NISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAK 646
            K+    F+D+ ++ A   Y +A     N+AE F  R+Q   KL N  EA++D N +I+L+ + SK Y +K   C +LEE++TA    EKG S+   +S F   I++ +  I                  T   Q     T PT + +T+N    T         N ++  +  T  D +        +  K RHE+YQ    VV+T+FAK
Sbjct:    5 KEGNSYFVDEQYDEALKCYDKACLELSNNAEAFFKRSQCHSKLSNLKEALSDINTSIKLDSNNSKYYLKKGQLCFELEEFDTALKTFEKGQSIDSENSSFKTWIRKSKAEIQSNPTTTTTTTPTPTPTPTPAPQPVTTTTNPTPIPTTSNTTTTTNNNNNNNNNNNNNNNNNNTTTDSTTTKLPIPSSGNKVRHEWYQTETHVVLTIFAK 214          
BLAST of FC869240 vs. ExPASy Swiss-Prot
Match: PPP5_SOLLC (Serine/threonine-protein phosphatase 5 OS=Solanum lycopersicum GN=PP5 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.319e-15
Identity = 42/116 (36.21%), Postives = 69/116 (59.48%), Query Frame = 2
Query:   74 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 421
            A +L++ A EAF    +  A DLY+QAIE++  +A  +A+RA A  KL+ +  A+ D  RAIE++P  SK Y+R+  A + + +++ A    ++   L P D   T  +KECE+ +
Sbjct:   14 AEELKQLANEAFKGHKYSQAIDLYTQAIELNGENAVYYANRAFAHTKLEEYGSAIQDGTRAIEIDPRYSKGYYRRGAAYLAMGKFKDALKDFQQVKKLCPNDPDATKKLKECEKAV 129          
BLAST of FC869240 vs. ExPASy Swiss-Prot
Match: PPP5_ARATH (Serine/threonine-protein phosphatase 5 OS=Arabidopsis thaliana GN=PAPP5 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.117e-14
Identity = 40/116 (34.48%), Postives = 71/116 (61.21%), Query Frame = 2
Query:   74 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 421
            A + + +A EAF    +  A DLY++AIE++ N+A  +A+RA A  KL+ +  A+ DA++AIE++   SK Y+R+  A + + +++ A    ++   L+P D   T  +KECE+ +
Sbjct:   13 AEEFKSQANEAFKGHKYSSAIDLYTKAIELNSNNAVYWANRAFAHTKLEEYGSAIQDASKAIEVDSRYSKGYYRRGAAYLAMGKFKDALKDFQQVKRLSPNDPDATRKLKECEKAV 128          
BLAST of FC869240 vs. ExPASy Swiss-Prot
Match: SGTB_RAT (Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Rattus norvegicus GN=Sgtb PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.107e-13
Identity = 48/174 (27.59%), Postives = 87/174 (50.00%), Query Frame = 2
Query:   74 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVST--NN---VQPATNISSTEDVETVMDVSNEAAMAAPA 580
            A  L+ +      ++ +  A D Y+QAIE+ PN+A  + +RA A  KL ++T+A+ D  +AI ++   SKAY R   A   + ++E A  + +K   L P +  + + +K  E+++ E +      P  TG T  +++  NN   +  A ++     V+ +M      A+  PA
Sbjct:   85 ADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLSHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTAMNKFEEAVTSYQKALDLDPENDSYKSNLKIAEQKLREVS-----SPTGTGLTFDMASLINNPAFITMAASLMQNPQVQQLMSGMMTNAIGGPA 253          
BLAST of FC869240 vs. ExPASy Swiss-Prot
Match: PPT1_SCHPO (Serine/threonine-protein phosphatase T OS=Schizosaccharomyces pombe GN=ppt1 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.593e-13
Identity = 38/116 (32.76%), Postives = 72/116 (62.07%), Query Frame = 2
Query:   74 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 421
            A +L+ +A +   + +   A DLY++AIE+   +A L+++R+ A +K +++  A+ DA++AIE +P  +KAY+R+ATA + + + + A     K  +LAP D      ++ECE+ +
Sbjct:    5 ALELKNEANKFLKEGHIVQAIDLYTKAIELDSTNAILYSNRSLAHLKSEDYGLAINDASKAIECDPEYAKAYFRRATAHIAIFQPKEAVGDFRKALALAPSDPAARKKLRECEQLV 120          
BLAST of FC869240 vs. ExPASy Swiss-Prot
Match: SGTB_HUMAN (Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Homo sapiens GN=SGTB PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.693e-13
Identity = 48/174 (27.59%), Postives = 87/174 (50.00%), Query Frame = 2
Query:   74 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVST--NN---VQPATNISSTEDVETVMDVSNEAAMAAPA 580
            A  L+ +      ++ +  A D Y+QAIE+ PN+A  + +RA A  KL ++T+A+ D  +AI ++   SKAY R   A   L ++E A  + +K   L P +  + + +K  E+++ E +      P  TG +  +++  NN   +  A ++     V+ +M      A+  PA
Sbjct:   85 ADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTALNKFEEAVTSYQKALDLDPENDSYKSNLKIAEQKLREVS-----SPTGTGLSFDMASLINNPAFISMAASLMQNPQVQQLMSGMMTNAIGGPA 253          
BLAST of FC869240 vs. ExPASy Swiss-Prot
Match: SGTB_MOUSE (Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Mus musculus GN=Sgtb PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.129e-13
Identity = 47/174 (27.01%), Postives = 87/174 (50.00%), Query Frame = 2
Query:   74 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVST--NN---VQPATNISSTEDVETVMDVSNEAAMAAPA 580
            A  L+ +      ++ +  A D Y+QAIE+ PN+A  + +RA A  KL ++T+A+ D  +AI ++   SKAY R   A   + ++E A  + +K   L P +  + + +K  E+++ E +      P  TG +  +++  NN   +  A ++     V+ +M      A+  PA
Sbjct:   85 ADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLSHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTAMNKFEEAVTSYQKALDLDPENDSYKSNLKIAEQKLREVS-----SPTGTGLSFDMASLINNPAFITMAASLMQNPQVQQLMSGMMTNAIGGPA 253          
BLAST of FC869240 vs. ExPASy Swiss-Prot
Match: DNJC7_DICDI (DnaJ homolog subfamily C member 7 homolog OS=Dictyostelium discoideum GN=dnajc7 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.850e-12
Identity = 38/113 (33.63%), Postives = 62/113 (54.87%), Query Frame = 2
Query:   86 EKKAKEAFIDDYFELAYDLYSQAIEISPN----SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE 412
            +K+  E F    ++ AYD +++A+ I P     +++L+++RA A + L   +EA+ D   A+ ++P+  KAY R+A   MK E YE A    EK  SL P +      IKE +
Sbjct:  239 KKEGNEYFQSKNYQAAYDSFTEALSIDPKLETMNSQLYSNRAAALVHLNRISEAINDCTSAVTIDPNYGKAYIRRAQCQMKQENYEDAVRDYEKAQSLDPENGELQRNIKEAK 351          
BLAST of FC869240 vs. ExPASy Swiss-Prot
Match: SGTA_BOVIN (Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Bos taurus GN=SGTA PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.156e-11
Identity = 43/121 (35.54%), Postives = 61/121 (50.41%), Query Frame = 2
Query:   65 SLMATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 427
            S  A  L+ +  E    + FE A   Y +AIE++P +A  F +RA A  KL N+  AV D  RAI ++PS SKAY R   A   L ++  A     K   L P +  + + +K  E R+ E
Sbjct:   88 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPSYSKAYGRMGLALSSLNKHTEAVAYYRKALELDPDNETYKSNLKVAELRLRE 208          
BLAST of FC869240 vs. ExPASy Swiss-Prot
Match: SGTA_RAT (Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Rattus norvegicus GN=Sgta PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.972e-11
Identity = 42/121 (34.71%), Postives = 62/121 (51.24%), Query Frame = 2
Query:   65 SLMATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 427
            S  A  L+ +  E    + FE A  LY +AIE++P +A  F +RA A  KL N+  AV D  RAI ++P  SKAY R   A   L ++  A    +K   L P +  + + +K  E ++ E
Sbjct:   88 SAEAERLKTEGNEQMKLENFEAAVHLYGKAIELNPANAVYFCNRAAAYSKLGNYVGAVQDCERAIGIDPGYSKAYGRMGLALSSLNKHAEAVAYYKKALELDPDNDTYKSNLKIAELKLRE 208          
The following BLAST results are available for this feature:
BLAST of FC869240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
SUGT1_DICDI2.175e-1829.52Protein SUGT1 homolog OS=Dictyostelium discoideum ... [more]
PPP5_SOLLC1.319e-1536.21Serine/threonine-protein phosphatase 5 OS=Solanum ... [more]
PPP5_ARATH1.117e-1434.48Serine/threonine-protein phosphatase 5 OS=Arabidop... [more]
SGTB_RAT2.107e-1327.59Small glutamine-rich tetratricopeptide repeat-cont... [more]
PPT1_SCHPO3.593e-1332.76Serine/threonine-protein phosphatase T OS=Schizosa... [more]
SGTB_HUMAN4.693e-1327.59Small glutamine-rich tetratricopeptide repeat-cont... [more]
SGTB_MOUSE6.129e-1327.01Small glutamine-rich tetratricopeptide repeat-cont... [more]
DNJC7_DICDI8.850e-1233.63DnaJ homolog subfamily C member 7 homolog OS=Dicty... [more]
SGTA_BOVIN1.156e-1135.54Small glutamine-rich tetratricopeptide repeat-cont... [more]
SGTA_RAT1.972e-1134.71Small glutamine-rich tetratricopeptide repeat-cont... [more]

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Properties
Property NameValue
Genbank descriptionC31010A10EF AbioticL1 Citrus clementina cDNA clone C31010A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869240 ID=FC869240; Name=FC869240; organism=Citrus clementina; type=EST; length=655bp
TTCATAGACTCTCACTCGCAAGTTGTTCTCTTTCTTTCTGGACTCTTCGA
TTAGCCAACTGTAGTCTCTAATGGCAACCGATCTGGAGAAGAAAGCCAAA
GAGGCGTTCATCGACGACTACTTCGAGCTCGCCTACGATCTCTACTCGCA
AGCCATTGAGATTAGCCCTAATAGCGCTGAGCTCTTCGCCGACCGCGCTC
AAGCCAGCATCAAACTCCAAAATTTCACTGAGGCTGTTGCGGATGCGAAC
CGAGCAATTGAGTTGGAGCCTTCAATGTCTAAAGCCTATTGGCGTAAAGC
CACCGCTTGCATGAAGCTTGAAGAATATGAAACGGCTAAGGTGGCACTAG
AAAAAGGTGCTTCTCTAGCTCCAGGAGATTCGAGATTTACCAACTTAATC
AAAGAATGTGAGGAGCGCATAGCAGAGGAAACTGGTGAGTTACAAAAGCA
GCCTTTGGAAACAGGCCCAACAAATGTTGTGTCAACTAACAACGTCCAGC
CTGCGACGAACATTTCCTCAACTGAGGATGTTGAGACAGTGATGGATGTT
TCCAATGAGGCTGCGATGGCTGCACCAGCCAGACCAAAATACAGGCATGA
ATTTTACCAGAAGCCTGAGGAAGTAGTTGTGACTGTGTTTGCAAAGGGCA
TACCT
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