FC869248

Overview
NameFC869248
Unique NameFC869248
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12295 contig Ccv1_Contig12295:231..968. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869248 vs. ExPASy Swiss-Prot
Match: RGLG2_ARATH (E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.140e-27
Identity = 59/91 (64.84%), Postives = 73/91 (80.22%), Query Frame = 3
Query:  465 PKENIISSARDKMKKKYSFIPDTFSSLEQVTAALRDSGLESSNLILGIDFTKSNEWTGXVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPF 737
            P ++  S  + ++++KYS I D +SSLEQVT AL  +GLESSNLI+GIDFTKSNEWTG  SFN +SLH IG +PNPYE+AITIIG+TLA F
Sbjct:   80 PSQSYGSDNKKRLERKYSKISDDYSSLEQVTEALARAGLESSNLIVGIDFTKSNEWTGARSFNRKSLHFIGSSPNPYEQAITIIGRTLAAF 170          
BLAST of FC869248 vs. ExPASy Swiss-Prot
Match: RGLG1_ARATH (E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.251e-24
Identity = 55/82 (67.07%), Postives = 66/82 (80.49%), Query Frame = 3
Query:  492 RDKMKKKYSFIPDTFSSLEQVTAALRDSGLESSNLILGIDFTKSNEWTGXVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPF 737
            R K  ++YS I D +SSL QV+ AL  +GLESSNLI+GIDFTKSNEWTG  SFN +SLH + +TPNPYE+AITIIG+TLA F
Sbjct:  123 RKKFDRRYSKISDNYSSLLQVSEALGRAGLESSNLIVGIDFTKSNEWTGAKSFNRKSLHHLSNTPNPYEQAITIIGRTLAAF 204          
BLAST of FC869248 vs. ExPASy Swiss-Prot
Match: CPNA2_CAEEL (Copine domain-containing protein 2 OS=Caenorhabditis elegans GN=cpna-2 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 5.383e-11
Identity = 33/69 (47.83%), Postives = 47/69 (68.12%), Query Frame = 3
Query:  534 FSSLEQVTAALRDSGLESSNLILGIDFTKSNEWTGXVSFNNRSLHAIGDTP-NPYEKAITIIGKTLAPF 737
            F +L+ +  A++ +GLE SNLI GID+TKSN + G  +F+ R LH I     NPY++ I I+GKTL+ F
Sbjct: 7299 FKTLDDIVKAIKHAGLEYSNLIFGIDYTKSNFYQGERTFDKRPLHTIDPAEMNPYQQVIQIVGKTLSSF 7367          
The following BLAST results are available for this feature:
BLAST of FC869248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RGLG2_ARATH9.140e-2764.84E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis t... [more]
RGLG1_ARATH3.251e-2467.07E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis t... [more]
CPNA2_CAEEL5.383e-1147.83Copine domain-containing protein 2 OS=Caenorhabdit... [more]
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Properties
Property NameValue
Genbank descriptionC31010B07EF AbioticL1 Citrus clementina cDNA clone C31010B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869248 ID=FC869248; Name=FC869248; organism=Citrus clementina; type=EST; length=738bp
ACTGAGGTTAATCTCGTAACTACAAAGATTCTAGGGTTGAAGATTCTGGT
TTGAGTTGAGAAAGAAATATGCTCAAGGAAAGCATAACTTCCACCACAGA
TCAATGAATAAGCATCTCGCAGCCTGTCCCAGTTCATTAATCCTGTGTGC
AAGATTTCTCTTTGCCTTTCTTTAATCCCCACTTGGTGATACCTTTTTCT
TCATATAAAAAATATGCTATGCTCTCTCTATAAATCTTTTGTTTCTCTTC
TTACTTAATAATTTAAGCTTCTGTGTGAGGCGGTGAACATGATATGGGCA
ACATTTTTGCCTTCCTTAAACAGCGTAATCGCAGCATCAGCATCAGCGGG
ATAAGTAGCAGTAGAAGTACTAGTGCTTCTGCAAATCATAGATACCCATC
TATGTCTAAACAAGCATCTTCTGTTTCTACGAGTGGCACCTCATCTGCTG
CTGCTAGTGCTACCCCTAAAGAAAATATCATTTCTTCTGCCAGAGACAAG
ATGAAGAAAAAGTATTCATTTATTCCTGATACTTTTTCATCCCTTGAACA
GGTAACAGCTGCCTTGAGAGATTCTGGTCTAGAATCATCCAATCTCATTC
TTGGGATCGATTTCACTAAAAGCAATGAATGGACTGGCNAAGTTTCATTC
AATAATCGGAGCCTTCATGCCATTGGCGACACACCTAATCCATATGAGAA
AGCCATCACTATCATTGGAAAGACTCTGGCTCCATTTG
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