FC869251

Overview
NameFC869251
Unique NameFC869251
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length631
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9360 contig Ccv1_Contig9360:57..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869251 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 5.943e-79
Identity = 143/191 (74.87%), Postives = 159/191 (83.25%), Query Frame = 2
Query:   47 IGVKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFXXXXXXXXXXXXXXXXXXXNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGSTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIT 619
            +GV EMLG PLN  +  R+SAP AS+PSTFK VALF                   ++ELAKWYGPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+ELIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDG+TLNYFGKNIPINLV AV+AE+VL+GGAEYYRIT
Sbjct:    4 LGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPAKSKAVSET---SDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRIT 191          
BLAST of FC869251 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.837e-26
Identity = 60/132 (45.45%), Postives = 81/132 (61.36%), Query Frame = 2
Query:  227 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGSTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYR 613
            ++YGPDR  FL  G    ++ PEYLTGE PGDYG+D  GLS  P  F++Y+  ELIHARWA+LGA G + PE  +++      E VWFK GA +     LNY G    I   +++  +  ++VL+G AE YR
Sbjct:   32 EFYGPDRAKFL--GPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYR 161          
BLAST of FC869251 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.183e-24
Identity = 60/132 (45.45%), Postives = 79/132 (59.85%), Query Frame = 2
Query:  230 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGSTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 616
            WYGPDR ++L        E P YLTGE PGDYG+D  GLS  P++F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK GA +     L+Y G    +    + A+ A +++L+G  E YRI
Sbjct:   58 WYGPDRVLYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRI 185          
BLAST of FC869251 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.183e-24
Identity = 63/132 (47.73%), Postives = 80/132 (60.61%), Query Frame = 2
Query:  230 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGSTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 616
            WYGPDR ++L  G L   E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    I    + A+ A ++VL+G  E YRI
Sbjct:   49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRI 176          
BLAST of FC869251 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.463e-24
Identity = 58/133 (43.61%), Postives = 77/133 (57.89%), Query Frame = 2
Query:  227 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGSTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRI 616
            +WYGPDR  +L       +  P YLTGE PGDYG+D  GLS  P+ F KY+  E+IHARWA+LGA G + PE  + +      E VWFK GA +     L+Y G    I   N+V  +  ++VL+G  E YR+
Sbjct:   38 EWYGPDRAKWLGPF---STNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRV 167          
BLAST of FC869251 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.463e-24
Identity = 62/132 (46.97%), Postives = 81/132 (61.36%), Query Frame = 2
Query:  230 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGSTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 616
            WYGPDR ++L  G L   E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    I    + A+ A ++VL+G  E YR+
Sbjct:   49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRV 176          
BLAST of FC869251 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 5.463e-24
Identity = 61/132 (46.21%), Postives = 79/132 (59.85%), Query Frame = 2
Query:  230 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGSTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 616
            WYGPDR  +L        +IP YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G    I    + A+ A ++VL+G  E YR+
Sbjct:   49 WYGPDRPKYLGPF---SDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRV 176          
BLAST of FC869251 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.135e-24
Identity = 60/132 (45.45%), Postives = 80/132 (60.61%), Query Frame = 2
Query:  230 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGSTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYYRI 616
            WYGPDR ++L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK GA +     L+Y G  + I    + A+ A +++L+G  E YR+
Sbjct:   62 WYGPDRVLYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRV 189          
BLAST of FC869251 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.135e-24
Identity = 60/132 (45.45%), Postives = 79/132 (59.85%), Query Frame = 2
Query:  230 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGSTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 616
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ FSK +  E+IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YRI
Sbjct:   52 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRI 179          
BLAST of FC869251 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.135e-24
Identity = 60/132 (45.45%), Postives = 78/132 (59.09%), Query Frame = 2
Query:  230 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGSTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 616
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE F + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+G  E YR+
Sbjct:   50 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 177          
The following BLAST results are available for this feature:
BLAST of FC869251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB26_ARATH5.943e-7974.87Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB2_DUNTE5.837e-2645.45Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2B_PINSY4.183e-2445.45Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB22_MAIZE4.183e-2447.73Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2_CHLMO5.463e-2443.61Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB29_MAIZE5.463e-2446.97Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB21_GOSHI5.463e-2446.21Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB2A_PINSY7.135e-2445.45Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB28_PEA7.135e-2445.45Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB24_PETSP7.135e-2445.45Chlorophyll a-b binding protein 25, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC31010B10EF AbioticL1 Citrus clementina cDNA clone C31010B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869251 ID=FC869251; Name=FC869251; organism=Citrus clementina; type=EST; length=631bp
TCTGAAGATGGCTTCATTGGCAGCATCGCCCACTCCTGCTGCCTCCATTG
GAGTTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGTGCTGTTAGG
ACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCCCGTTGCTCT
CTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGTCGCCG
TCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATGGTCCTGACCGAAGA
ATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCCTGAGTACTT
GACCGGAGAAGTTCCCGGAGACTATGGTTACGATCCTTTTGGTCTCAGCA
AGAAACCAGACGACTTCAGCAAATATCAGGCATATGAATTGATTCATGCC
AGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGCCTTTAA
CAAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGTTCAAGACTGGAG
CTCTACTTCTTGATGGAAGCACATTGAACTACTTCGGAAAGAACATCCCA
ATCAACCTTGTTTTTGCTGTCATTGCTGAGATTGTTCTTGTAGGTGGTGC
TGAATATTATAGAATCACCACGGTTTGGATT
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