FC869254

Overview
NameFC869254
Unique NameFC869254
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12877 contig Ccv1_Contig12877:293..1022. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869254 vs. ExPASy Swiss-Prot
Match: NOS1_ARATH (Nitric oxide synthase 1 OS=Arabidopsis thaliana GN=NOS1 PE=1 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.266e-89
Identity = 163/201 (81.09%), Postives = 179/201 (89.05%), Query Frame = 3
Query:   63 VNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQLKTVLCGRCRLLSHGHMITAVXXXXXXXXXKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLAGANPIILVVTKIDLLPKGTDFNCVGDWVVEATTNKKLNVLSVHPTSSKSLAGIVGVASEIQKEKKGRDVYILGSANVGKSAFINALLK 665
            V+++V+ CYGCGAPLQTS+ D+PG+VD  TYELKKKHHQL+T++CGRC+LLSHGHMITAV         KQFVSADELREKLSHLR EKALIVKLVDIVDFNGSFLAR+RDL GANPIILV+TKIDLLPKGTD NC+GDWVVE T  KKLNVLSVH TSSKSL G+ GVASEIQKEKKGRDVYILG+ANVGKSAFINALLK
Sbjct:  101 VDTSVSCCYGCGAPLQTSDVDSPGFVDLVTYELKKKHHQLRTMICGRCQLLSHGHMITAVGGNGGYPGGKQFVSADELREKLSHLRHEKALIVKLVDIVDFNGSFLARVRDLVGANPIILVITKIDLLPKGTDMNCIGDWVVEVTMRKKLNVLSVHLTSSKSLDGVSGVASEIQKEKKGRDVYILGAANVGKSAFINALLK 301          
BLAST of FC869254 vs. ExPASy Swiss-Prot
Match: NOS_ORYSJ (Putative nitric oxide synthase OS=Oryza sativa subsp. japonica GN=Os02g0104700 PE=3 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 4.214e-85
Identity = 151/198 (76.26%), Postives = 173/198 (87.37%), Query Frame = 3
Query:   72 AVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQLKTVLCGRCRLLSHGHMITAVXXXXXXXXXKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLAGANPIILVVTKIDLLPKGTDFNCVGDWVVEATTNKKLNVLSVHPTSSKSLAGIVGVASEIQKEKKGRDVYILGSANVGKSAFINALLK 665
            + A+CYGCGAPLQT++  APGYV P TY+LKK+HHQL+TVLCGRC+LLSHGHMITAV         KQFVSAD+LR+KLS+LR EKALI+KLVDIVDFNGSFLAR+RD AGANPIILV+TK+DLLP+ TD NC+GDWVVEA   KKLNVLSVH TSSKSL G+ GV SEIQ+EKKGRDVYILGSANVGKSAFI+A+L+
Sbjct:   96 SAAACYGCGAPLQTADEAAPGYVHPATYDLKKRHHQLRTVLCGRCKLLSHGHMITAVGGHGGYPGGKQFVSADQLRDKLSYLRHEKALIIKLVDIVDFNGSFLARVRDFAGANPIILVITKVDLLPRDTDLNCIGDWVVEAVVKKKLNVLSVHLTSSKSLVGVTGVISEIQQEKKGRDVYILGSANVGKSAFISAMLR 293          
BLAST of FC869254 vs. ExPASy Swiss-Prot
Match: YQEH_BACSU (Uncharacterized protein yqeH OS=Bacillus subtilis GN=yqeH PE=4 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.927e-21
Identity = 65/195 (33.33%), Postives = 98/195 (50.26%), Query Frame = 3
Query:   84 CYGCGAPLQTSESDAPGYVDPDTYELKKKHHQLKTVLCGRCRLLSHGHMITAVXXXXXXXXXKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLAGANPIILVVTKIDLLPKGTDFNCVGDWVVEATTNKKLNVLSVHPTSSKSLAGIVGVASEIQKEKKGRDVYILGSANVGKSAFINALLKK 668
            C GCG  +QT +    GY  P +  L K++     V+C RC  L + + I  V            ++ D+    L  +    +L+VK+VDI DFNGS++  ++ L G NPI+LV  K D+LPK      +  W+        L  + V   S+    GI  V   I+  + G+DVY++G  NVGKS FIN ++K+
Sbjct:    6 CIGCGVTIQTEDKTGLGYAPPAS--LTKEN-----VICQRCFRLKNYNEIQDVS-----------LTDDDFLNILHGIGETDSLVVKIVDIFDFNGSWINGLQRLVGGNPILLVGNKADILPKSLKRERLIQWMKREAKELGLKPVDVFLVSAGRGQGIREVIDAIEHYRNGKDVYVVGCTNVGKSTFINRIIKE 182          
The following BLAST results are available for this feature:
BLAST of FC869254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
NOS1_ARATH1.266e-8981.09Nitric oxide synthase 1 OS=Arabidopsis thaliana GN... [more]
NOS_ORYSJ4.214e-8576.26Putative nitric oxide synthase OS=Oryza sativa sub... [more]
YQEH_BACSU1.927e-2133.33Uncharacterized protein yqeH OS=Bacillus subtilis ... [more]
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Properties
Property NameValue
Genbank descriptionC31010C01EF AbioticL1 Citrus clementina cDNA clone C31010C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869254 ID=FC869254; Name=FC869254; organism=Citrus clementina; type=EST; length=728bp
TTCCAAGGTAGTCGTAATCAGACAGTAAGAAGAAAAGGAAGAAGAAAGAT
AAGGTTTTGAAGGTTAACTCTGCCGTTGCTTCTTGTTACGGCTGTGGAGC
TCCGTTGCAGACCTCGGAGTCGGATGCTCCGGGTTATGTTGACCCGGATA
CGTATGAATTGAAGAAGAAACACCACCAGCTTAAAACTGTGCTTTGTGGG
AGGTGTCGGCTTTTATCCCATGGACACATGATAACTGCGGTTGGAGGAAA
TGGAGGTTACGCCGGTGGGAAGCAGTTTGTTTCAGCCGATGAGCTCAGGG
AGAAGCTGTCTCACTTACGTCGTGAGAAAGCTTTAATTGTTAAATTGGTT
GATATTGTGGACTTCAATGGCAGCTTTTTGGCTCGTATACGTGATCTTGC
TGGTGCAAATCCAATAATATTAGTTGTGACCAAGATTGATCTTCTTCCGA
AAGGAACAGATTTTAATTGTGTTGGCGATTGGGTTGTAGAAGCTACAACA
AACAAGAAGCTTAACGTCTTGAGTGTTCATCCCACCAGTTCAAAGTCTTT
AGCAGGAATTGTGGGAGTTGCATCAGAGATTCAAAAGGAGAAAAAGGGGC
GGGACGTTTACATTCTGGGGTCAGCTAATGTTGGGAAGTCAGCATTCATC
AATGCATTACTCAAAAAATGGGAGAAAGGGATCCAGCTGCTGCGATGGCA
CAAAGTACAGGCCAATTTCATCTGCTGT
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