FC869256
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC869256 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 341.273 bits (874), Expect = 2.677e-93 Identity = 166/187 (88.77%), Postives = 173/187 (92.51%), Query Frame = 1 Query: 97 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAY 657 E ARQI+G+R +QS T RK SFVVRAASTPPVKQGA+R LWFASKQSLSYLDG LPGD+GFDPLGLSDPEGTGGFIEPKWLAYGEVINGR+AMLGA GAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAEHRRFQDWA PGSMG+QYFLG EK LGGSGDPAY Sbjct: 17 EAARQIIGSRISQSVT---RKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAY 200
BLAST of FC869256 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1) HSP 1 Score: 328.176 bits (840), Expect = 2.345e-89 Identity = 161/188 (85.64%), Postives = 167/188 (88.83%), Query Frame = 1 Query: 97 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGA-DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAY 657 E RQ ARS S G SRKG +VRAA+TPPVKQG DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGEVINGR+AMLGAVGAIAPE LGK GLIPQETALAWFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAEHRRFQDWA PGSMG+QYFLG EK GGSG+PAY Sbjct: 17 EAVRQSFRARSLPSSVGCSRKG--LVRAAATPPVKQGGVDRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAY 202
BLAST of FC869256 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 5.884e-24 Identity = 69/166 (41.57%), Postives = 89/166 (53.61%), Query Frame = 1 Query: 112 ILGARSAQSPTGSS-RKGSFVV----RAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPG 591 I+GA A G R F+ R+ + V DRPLWF +LDGSLPGD+GFDPLGL SDPE KW A E+++ R+AMLGA G PE L K G++ +W+ AG Y+ D TLFV+E+ L+G+AE RR+ D PG Sbjct: 26 IVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESL------KWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVL---NTPSWY------TAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPG 176
BLAST of FC869256 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.920e-23 Identity = 61/140 (43.57%), Postives = 82/140 (58.57%), Query Frame = 1 Query: 175 RAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPG 591 R+A+T V DRPLWF +LDGSLPGD+GFDPLGL SDPE +W E+++ R+AMLGA G PE+L K G++ +W+ AG Y+ D TLF++E+ L+G+AE RR+ D PG Sbjct: 52 RSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESL------RWNQQAELVHCRWAMLGAAGIFIPELLTKIGIL---NTPSWY------TAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPG 176
BLAST of FC869256 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.039e-20 Identity = 67/174 (38.51%), Postives = 87/174 (50.00%), Query Frame = 1 Query: 139 PTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAY 657 P G S SF V A K+G W S YL GSLPGD GFDPLGL+ DPE +W E++NGR+AMLG G + PE+ G+I W+ AG Y+A TLFV+E L + E RR+QD NPGS+ + F++Y +G+ Y Sbjct: 38 PVGCSPSASFKVEA------KKGE----WLPGLASPGYLTGSLPGDNGFDPLGLAEDPENL------RWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII---NVPKWY------AAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPAGEVGY 184
BLAST of FC869256 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.039e-20 Identity = 67/166 (40.36%), Postives = 84/166 (50.60%), Query Frame = 1 Query: 178 AASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMG-----RQYFL--GFEKYLGGSGDP 651 +A T K A + W S YL GSL GD GFDPLGL+ DPE KW E++NGR+AMLG G + PE+ K G+I W+ AG Y+A TLFV+E L + E RR+QD NPGS+ +QY L G Y GG +P Sbjct: 42 SAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENL------KWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII---NVPEWYD------AGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNP 192
BLAST of FC869256 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.552e-16 Identity = 53/128 (41.41%), Postives = 71/128 (55.47%), Query Frame = 1 Query: 223 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGR 603 W QS +YLDGSL GD GFDPL L+ DPE + +W +V+NGR+AMLG G + PE+L KAGL+ A W + G Y+A T + M+ + E RR+QD NPGS+ + Sbjct: 36 WLPGLQSPAYLDGSLEGDNGFDPLALAEDPE------DLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLM---NAPEWLRL-----PGKETYFASSSTALRVHMS-STYVEIRRWQDIKNPGSVNQ 148
BLAST of FC869256 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.606e-13 Identity = 63/162 (38.89%), Postives = 84/162 (51.85%), Query Frame = 1 Query: 205 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDP 651 G DRP + S+Q+ SYL G PGDYG+D GLS DPE F + L EVI+ R+AMLGA+G + PEIL K G+ E WF+ G I G +Y +P ++ +++ LMGF E R G +G G +K Y GG+ DP Sbjct: 49 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR----VGGGPLGE----GLDKVYPGGAFDP 194
BLAST of FC869256 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.606e-13 Identity = 63/162 (38.89%), Postives = 84/162 (51.85%), Query Frame = 1 Query: 205 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDP 651 G DRP + S+Q+ SYL G PGDYG+D GLS DPE F + L EVI+ R+AMLGA+G + PEIL K G+ E WF+ G I G +Y +P ++ +++ LMGF E R G +G G +K Y GG+ DP Sbjct: 49 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR----VGGGPLGE----GLDKVYPGGAFDP 194
BLAST of FC869256 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.103e-13 Identity = 63/162 (38.89%), Postives = 83/162 (51.23%), Query Frame = 1 Query: 205 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDP 651 G DRP + S+Q+ SYL G PGDYG+D GLS DPE F + L EVI+ R+AMLGA+G + PEIL K G+ E WF+ G I G +Y +P ++ ++ LMGF E R G +G G +K Y GG+ DP Sbjct: 51 GEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE---TFARNREL---EVIHCRWAMLGALGCVFPEILSKNGVTFGEA--VWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYR----VGGGPLGE----GLDKIYPGGAFDP 196 The following BLAST results are available for this feature:
BLAST of FC869256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
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Sequences
The
following sequences are available for this feature:
EST sequence >FC869256 ID=FC869256; Name=FC869256; organism=Citrus clementina; type=EST; length=659bpback to top |