FC869257

Overview
NameFC869257
Unique NameFC869257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length509
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9473 contig Ccv1_Contig9473:1..510. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869257 vs. ExPASy Swiss-Prot
Match: CHLP_ARATH (Geranylgeranyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=CHLP PE=1 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 1.883e-91
Identity = 158/169 (93.49%), Postives = 165/169 (97.63%), Query Frame = 3
Query:    3 YAIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVL 509
            YAIAFQER++IPDEKM YYE+LAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLS RVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAI+EGS+NG +MIDEGDLRKYLEKWDKTY PTY+VLDVL
Sbjct:  229 YAIAFQERIRIPDEKMTYYEDLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSKRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSQNGKKMIDEGDLRKYLEKWDKTYLPTYRVLDVL 397          
BLAST of FC869257 vs. ExPASy Swiss-Prot
Match: CHLP_TOBAC (Geranylgeranyl diphosphate reductase, chloroplastic OS=Nicotiana tabacum GN=CHLP PE=2 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 1.650e-87
Identity = 152/169 (89.94%), Postives = 157/169 (92.90%), Query Frame = 3
Query:    3 YAIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVL 509
            YAIAFQER+KI D+KM YYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHK DIKKFQLATR RA  KI GGKIIRVEAHPIPEHPRPRRL  RVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAI+EGSE G RM+DE DLRKYLEKWDKTYWPTYKVLD+L
Sbjct:  226 YAIAFQERIKISDDKMKYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKADIKKFQLATRLRADSKITGGKIIRVEAHPIPEHPRPRRLQDRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSEMGKRMVDESDLRKYLEKWDKTYWPTYKVLDIL 394          
BLAST of FC869257 vs. ExPASy Swiss-Prot
Match: CHLP_ORYSJ (Geranylgeranyl diphosphate reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=CHLP PE=2 SV=1)

HSP 1 Score: 306.605 bits (784), Expect = 4.205e-83
Identity = 144/169 (85.21%), Postives = 156/169 (92.31%), Query Frame = 3
Query:    3 YAIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVL 509
            YAIAFQERVKIPD+KM YYE  AEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHK DIKKFQ ATR RAKD+I GGKIIRVEAHPIPEHPRP+R++GRV LVGDAAGYVTKCSGEGIYFAAKSGRMCAEAI+ GS NGTRM++E DLR+YL ++D+ YWPTYKVLDVL
Sbjct:  225 YAIAFQERVKIPDDKMKYYEERAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKPDIKKFQAATRLRAKDRIEGGKIIRVEAHPIPEHPRPKRVAGRVTLVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVAGSANGTRMVEESDLRRYLAEFDRLYWPTYKVLDVL 393          
BLAST of FC869257 vs. ExPASy Swiss-Prot
Match: CHLP_SYNY3 (Geranylgeranyl diphosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=chlP PE=3 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 4.372e-64
Identity = 117/170 (68.82%), Postives = 137/170 (80.59%), Query Frame = 3
Query:    3 YAIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTV-THKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVL 509
            YAIAFQER+++P++KM YY+ LAEMYVGDDVSPDFY WVFPK DHVAVGTGT+  +K  IK  Q   R RA  K+ GG+II+VEAHPIPEHPRPRR+ GRVALVGDAAG VTK SGEGIYFAAKS RMCAE I+  S NG R+  E DL++Y+++WDK Y  TY VLD+L
Sbjct:  175 YAIAFQERIRLPEDKMAYYDELAEMYVGDDVSPDFYAWVFPKYDHVAVGTGTMKVNKARIKDLQAGIRTRAAKKLEGGEIIKVEAHPIPEHPRPRRVVGRVALVGDAAGTVTKSSGEGIYFAAKSARMCAETIVATSNNGQRVPTEADLKQYIKQWDKRYGATYLVLDIL 344          
BLAST of FC869257 vs. ExPASy Swiss-Prot
Match: BCHP_RHOCA (Geranylgeranyl diphosphate reductase OS=Rhodobacter capsulatus GN=bchP PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.402e-15
Identity = 57/167 (34.13%), Postives = 79/167 (47.31%), Query Frame = 3
Query:   12 AFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSGR-VALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVL 509
            A+ E +K P     Y     ++Y    +SPDFYGWVFP     ++G G  T   D+      T  R    +   + IR E  PIP  P     +G+ V L GDAAG V   SGEGIY+A   GR  AEA +   ++G       DL+     + K +   +KVL ++
Sbjct:  167 AYHEIIKAPTTVANYDPTRCDVYYDGRISPDFYGWVFPHGKTASIGMG--TELPDVSLKDCTTLLRQMSGLDKEETIRKEGAPIPLQPLDVWDNGKDVVLSGDAAGVVAPSSGEGIYYAHAGGRYAAEAAMAFLKSG----KPADLKLARAGFMKEHGTVFKVLRMM 327          
The following BLAST results are available for this feature:
BLAST of FC869257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CHLP_ARATH1.883e-9193.49Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_TOBAC1.650e-8789.94Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_ORYSJ4.205e-8385.21Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_SYNY34.372e-6468.82Geranylgeranyl diphosphate reductase OS=Synechocys... [more]
BCHP_RHOCA6.402e-1534.13Geranylgeranyl diphosphate reductase OS=Rhodobacte... [more]
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Properties
Property NameValue
Genbank descriptionC31010C04EF AbioticL1 Citrus clementina cDNA clone C31010C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869257 ID=FC869257; Name=FC869257; organism=Citrus clementina; type=EST; length=509bp
ATTACGCCATTGCATTTCAGGAAAGAGTCAAAATCCCTGACGAGAAAATG
GTGTACTATGAGAACTTGGCGGAGATGTACGTTGGTGATGATGTGTCGCC
GGACTTTTATGGGTGGGTGTTCCCCAAGTGTGATCATGTGGCAGTTGGTA
CAGGCACAGTGACACACAAAGGTGATATCAAGAAGTTCCAACTTGCAACT
AGAAACCGGGCCAAGGACAAAATCCTTGGTGGCAAGATCATTCGAGTGGA
GGCACACCCGATTCCTGAACACCCCCGCCCGCGGAGGCTATCGGGGAGAG
TGGCATTAGTCGGAGATGCAGCCGGGTACGTCACGAAATGCTCTGGCGAA
GGCATTTACTTTGCGGCAAAGAGTGGAAGAATGTGTGCGGAGGCCATCAT
TGAAGGGTCAGAGAATGGAACCAGGATGATCGATGAAGGGGACTTGAGGA
AGTATTTGGAGAAGTGGGATAAGACTTACTGGCCCACTTATAAGGTACTG
GATGTATTG
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