FC869260

Overview
NameFC869260
Unique NameFC869260
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC869260_ssr24 microsatellite FC869260_ssr24:24..33. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15129 contig Ccv1_Contig15129:10..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869260 vs. ExPASy Swiss-Prot
Match: CCD1_PHAVU (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1)

HSP 1 Score: 368.622 bits (945), Expect = 1.839e-101
Identity = 179/213 (84.04%), Postives = 191/213 (89.67%), Query Frame = 2
Query:   80 ARNGIVAVDPKPKNGVTSKVIDFVEKLIVKWMYDSSQPLHYLSGNFAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMKIGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLXTLGMLDYDKRLQHSF 718
            A  G+V VDPKP NG +SKVID +EKL+VK++YDSS P HYL+GNF PV  ETPPTKDL V GHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFV TSRLKQEE+FG +KFMKIGDLKGLFGLLMVN+ MLR KLKVLD+SYG GT NTALVYHHGKLLALSEADKPYA+KV EDGDL TLGMLDYDKRL HSF
Sbjct:   10 AEGGLVKVDPKPTNGFSSKVIDLLEKLLVKFLYDSSLPHHYLTGNFGPVT-ETPPTKDLPVKGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVETSRLKQEEYFGRSKFMKIGDLKGLFGLLMVNIHMLRTKLKVLDLSYGGGTTNTALVYHHGKLLALSEADKPYAIKVFEDGDLQTLGMLDYDKRLGHSF 221          
BLAST of FC869260 vs. ExPASy Swiss-Prot
Match: CCD1_PEA (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1)

HSP 1 Score: 368.237 bits (944), Expect = 2.401e-101
Identity = 179/221 (81.00%), Postives = 194/221 (87.78%), Query Frame = 2
Query:   56 EKLENDVVARNGIVAVDPKPKNGVTSKVIDFVEKLIVKWMYDSSQPLHYLSGNFAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMKIGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLXTLGMLDYDKRLQHSF 718
            EK EN V     I+ V+PKP NG TSK +D +EK+IVK  YDSS P H+LSGNFAPV DETPP KDL V GHLPDCLNGEFVRVGPNPKF+PVAGYHWFDGDGMIHGLRIKDGKA+YVSRFV+TSR KQEE+F G+KFMKIGDLKGLFGLLMVNMQMLRAKLK+LDVSYG+GTANTALVYHH KLLALSE DKPYA+KV EDGDL TLGMLDYDKRL H+F
Sbjct:    4 EKKENGV-----ILEVEPKPSNGFTSKAVDLLEKIIVKLFYDSSLPHHWLSGNFAPVKDETPPVKDLTVQGHLPDCLNGEFVRVGPNPKFSPVAGYHWFDGDGMIHGLRIKDGKASYVSRFVKTSRFKQEEYFNGSKFMKIGDLKGLFGLLMVNMQMLRAKLKILDVSYGHGTANTALVYHHQKLLALSEGDKPYAIKVFEDGDLQTLGMLDYDKRLGHNF 219          
BLAST of FC869260 vs. ExPASy Swiss-Prot
Match: CCD1_ARATH (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2)

HSP 1 Score: 351.288 bits (900), Expect = 3.038e-96
Identity = 164/211 (77.73%), Postives = 187/211 (88.63%), Query Frame = 2
Query:   86 NGIVAVDPKPKNGVTSKVIDFVEKLIVKWMYDSSQPLHYLSGNFAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMKIGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLXTLGMLDYDKRLQHSF 718
            + I++V P+P  G +SK++D +E+L+VK M+D+S PLHYLSGNFAP+ DETPP KDL V G LP+CLNGEFVRVGPNPKF  VAGYHWFDGDGMIHG+RIKDGKATYVSR+V+TSRLKQEEFFG AKFMKIGDLKG FGLLMVN+Q LR KLK+LD +YGNGTANTALVYHHGKLLAL EADKPY +KVLEDGDL TLG++DYDKRL HSF
Sbjct:    9 SSIISVHPRPSKGFSSKLLDLLERLVVKLMHDASLPLHYLSGNFAPIRDETPPVKDLPVHGFLPECLNGEFVRVGPNPKFDAVAGYHWFDGDGMIHGVRIKDGKATYVSRYVKTSRLKQEEFFGAAKFMKIGDLKGFFGLLMVNVQQLRTKLKILDNTYGNGTANTALVYHHGKLLALQEADKPYVIKVLEDGDLQTLGIIDYDKRLTHSF 219          
BLAST of FC869260 vs. ExPASy Swiss-Prot
Match: CCD_CROSA (Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1)

HSP 1 Score: 350.903 bits (899), Expect = 3.967e-96
Identity = 166/221 (75.11%), Postives = 185/221 (83.71%), Query Frame = 2
Query:   56 EKLENDVVARNGIVAVDPKPKNGVTSKVIDFVEKLIVKWMYDSSQPLHYLSGNFAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMKIGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLXTLGMLDYDKRLQHSF 718
            E  + +V  R  IVAV+P+P  G+ S  +D +EK +V   +D S+P HYLSGNFAPV DETPP  DL V GHLP+CLNGEFVRVGPNPKF PVAGYHWFDGDGMIHG+RIKDGKATY SR+V+TSRLKQEE+F G KFMKIGDLKG FGL MV MQ+LRAKLKV+DVSYG GT NTAL+YHHGKLLALSEADKPY VKVLEDGDL TLG+LDYDKRL HSF
Sbjct:    3 EVAKEEVEERRSIVAVNPQPSKGLVSSAVDLIEKAVVYLFHDKSKPCHYLSGNFAPVVDETPPCPDLPVRGHLPECLNGEFVRVGPNPKFMPVAGYHWFDGDGMIHGMRIKDGKATYASRYVKTSRLKQEEYFEGPKFMKIGDLKGFFGLFMVQMQLLRAKLKVIDVSYGVGTGNTALIYHHGKLLALSEADKPYVVKVLEDGDLQTLGLLDYDKRLSHSF 223          
BLAST of FC869260 vs. ExPASy Swiss-Prot
Match: NCED5_ARATH (Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.932e-39
Identity = 85/204 (41.67%), Postives = 123/204 (60.29%), Query Frame = 2
Query:  113 PKNGVTSKVIDFVEKLIV-----KWMYDSSQPLHYLSGNFAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMK-IGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLXTLGMLDYDKRL 706
            P     S  +DF E  ++     K +  +  P H +SGN+APVP+++  +  L V G +PDC++G ++R G NP F PV+G+H FDGDGM+H ++I +G A+Y  RF  T RL QE+  G   F K IG+L G  G+  + +   R    +L+   G G AN  LVY H +LLA+SE D PY V+V ++GDL T+G  D+D +L
Sbjct:   78 PLQRAASAALDFAETALLRRERSKPLPKTVDPRHQISGNYAPVPEQSVKSS-LSVDGKIPDCIDGVYLRNGANPLFEPVSGHHLFDGDGMVHAVKITNGDASYSCRFTETERLVQEKQLGSPIFPKAIGELHGHSGIARLMLFYARGLFGLLNHKNGTGVANAGLVYFHDRLLAMSEDDLPYQVRVTDNGDLETIGRFDFDGQL 280          
BLAST of FC869260 vs. ExPASy Swiss-Prot
Match: NCED1_MAIZE (9-cis-epoxycarotenoid dioxygenase 1, chloroplastic OS=Zea mays GN=VP14 PE=1 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.098e-37
Identity = 84/177 (47.46%), Postives = 114/177 (64.41%), Query Frame = 2
Query:  182 SSQPLHYLSGNFAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKA-TYVSRFVRTSRLKQEEFFGGAKFMK-IGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLXTLGMLDYDKRL 706
            ++ P   ++GNFAPV  E PP  +L V G +P  ++G + R G NP F PVAG+H FDGDGM+H LRI++G A +Y  RF  T+RL+QE   G   F K IG+L G  G+  + +   RA   ++D S G G AN  LVY +G+LLA+SE D PY V+V +DGDL T+G  D+D +L
Sbjct:  116 TADPAVQIAGNFAPV-GERPPVHELPVSGRIPPFIDGVYARNGANPCFDPVAGHHLFDGDGMVHALRIRNGAAESYACRFTETARLRQERAIGRPVFPKAIGELHGHSGIARLALFYARAACGLVDPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQL 291          
BLAST of FC869260 vs. ExPASy Swiss-Prot
Match: NCED3_ARATH (9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.118e-37
Identity = 77/177 (43.50%), Postives = 114/177 (64.41%), Query Frame = 2
Query:  182 SSQPLHYLSGNFAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMK-IGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLXTLGMLDYDKRLQ 709
            ++ P   ++GNFAPV +E P  ++L V+G LPD + G +VR G NP   PV G+H+FDGDGM+H ++ + G A+Y  RF +T+R  QE   G   F K IG+L G  G+  + +   RA   ++D ++G G AN  LVY +G+LLA+SE D PY V++  +GDL T+G  D+D +L+
Sbjct:  116 TADPSVQIAGNFAPV-NEQPVRRNLPVVGKLPDSIKGVYVRNGANPLHEPVTGHHFFDGDGMVHAVKFEHGSASYACRFTQTNRFVQERQLGRPVFPKAIGELHGHTGIARLMLFYARAAAGIVDPAHGTGVANAGLVYFNGRLLAMSEDDLPYQVQITPNGDLKTVGRFDFDGQLE 291          
BLAST of FC869260 vs. ExPASy Swiss-Prot
Match: NCED1_PHAVU (9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic OS=Phaseolus vulgaris GN=NCED1 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.025e-36
Identity = 81/197 (41.12%), Postives = 121/197 (61.42%), Query Frame = 2
Query:  140 IDFVEKLIVKWMYDSSQPLH-------YLSGNFAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMK-IGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLXTLGMLDYDKRL 706
            +D VE  +V   ++S  PL         ++GNFAPVP+     + L V+G +P C++G +VR G NP + PVAG+H+FDGDGM+H ++  +G A+Y  RF  T RL QE+  G   F K IG+L G  G+  + +   R+  +++D S+G G AN  LVY +  LLA+SE D PY V++  +GDL T+G  D++ +L
Sbjct:  116 LDMVETALVS--HESKHPLPKTADPKVQIAGNFAPVPEHAAD-QALPVVGKIPKCIDGVYVRNGANPLYEPVAGHHFFDGDGMVHAVKFTNGAASYACRFTETQRLAQEKSLGRPVFPKAIGELHGHSGIARLLLFYARSLFQLVDGSHGMGVANAGLVYFNNHLLAMSEDDLPYHVRITSNGDLTTVGRYDFNGQL 309          
BLAST of FC869260 vs. ExPASy Swiss-Prot
Match: NCED2_ARATH (9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic OS=Arabidopsis thaliana GN=NCED2 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.028e-35
Identity = 79/196 (40.31%), Postives = 120/196 (61.22%), Query Frame = 2
Query:  140 IDFVEKLIVKWMYDS-----SQPLHYLSGNFAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMK-IGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLXTLGMLDYDKRLQ 709
            ID  E+ ++    DS     + P   ++GN++PVP E+   ++L V G +PDC++G ++R G NP F P AG+H FDGDGM+H ++I +G A+Y  RF +T RL QE+  G   F K IG+L G  G+  + +   R    +++   G G AN  LVY + +LLA+SE D PY +K+ + GDL T+G  D+D +L+
Sbjct:   80 IDAAERALISHEQDSPLPKTADPRVQIAGNYSPVP-ESSVRRNLTVEGTIPDCIDGVYIRNGANPMFEPTAGHHLFDGDGMVHAVKITNGSASYACRFTKTERLVQEKRLGRPVFPKAIGELHGHSGIARLMLFYARGLCGLINNQNGVGVANAGLVYFNNRLLAMSEDDLPYQLKITQTGDLQTVGRYDFDGQLK 274          
BLAST of FC869260 vs. ExPASy Swiss-Prot
Match: NCED6_ARATH (9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic OS=Arabidopsis thaliana GN=NCED6 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.701e-35
Identity = 84/205 (40.98%), Postives = 122/205 (59.51%), Query Frame = 2
Query:  125 VTSKVIDFVEKLIVKWMYDS------SQPLHYLSGNFAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIK-DGKATYVSRFVRTSRLKQEEFFGGAKFMK-IGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLXTLGMLDYDKRLQHS 715
            + + ++D +E  IV  M  +      + P   LSGNFAPV +E P    L V+G +P CL G ++R G NP F P+AG+H FDGDGMIH + I  D + +Y  R+ +T+RL QE   G + F K IG+L G  GL  + +   RA + ++D + G G AN  +V+ +G+LLA+SE D PY VK+   GDL T+G   +D ++  S
Sbjct:   69 LAATMLDKIESSIVIPMEQNRPLPKPTDPAVQLSGNFAPV-NECPVQNGLEVVGQIPSCLKGVYIRNGANPMFPPLAGHHLFDGDGMIHAVSIGFDNQVSYSCRYTKTNRLVQETALGRSVFPKPIGELHGHSGLARLALFTARAGIGLVDGTRGMGVANAGVVFFNGRLLAMSEDDLPYQVKIDGQGDLETIGRFGFDDQIDSS 272          
The following BLAST results are available for this feature:
BLAST of FC869260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CCD1_PHAVU1.839e-10184.04Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD1_PEA2.401e-10181.00Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD1_ARATH3.038e-9677.73Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD_CROSA3.967e-9675.11Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Cr... [more]
NCED5_ARATH9.932e-3941.67Probable 9-cis-epoxycarotenoid dioxygenase NCED5, ... [more]
NCED1_MAIZE1.098e-3747.469-cis-epoxycarotenoid dioxygenase 1, chloroplastic... [more]
NCED3_ARATH7.118e-3743.509-cis-epoxycarotenoid dioxygenase NCED3, chloropla... [more]
NCED1_PHAVU6.025e-3641.129-cis-epoxycarotenoid dioxygenase NCED1, chloropla... [more]
NCED2_ARATH1.028e-3540.319-cis-epoxycarotenoid dioxygenase NCED2, chloropla... [more]
NCED6_ARATH8.701e-3540.989-cis-epoxycarotenoid dioxygenase NCED6, chloropla... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31010C07EF AbioticL1 Citrus clementina cDNA clone C31010C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869260 ID=FC869260; Name=FC869260; organism=Citrus clementina; type=EST; length=720bp
CCGTTGCATCCAGTGTGACGCGCAGAGAGAGAGTCAGAGAGTCATGGTGG
AGAAAGAAAAGCTGGAGAACGACGTCGTAGCACGAAATGGAATAGTGGCG
GTGGATCCCAAACCGAAGAATGGAGTGACTTCGAAAGTGATAGACTTTGT
GGAGAAACTGATAGTGAAGTGGATGTACGATTCTTCACAGCCTCTTCATT
ATCTCTCCGGTAACTTCGCTCCAGTTCCTGACGAGACTCCTCCTACTAAA
GACCTCCACGTCATCGGCCATCTCCCCGATTGCTTGAATGGGGAGTTTGT
CAGGGTTGGTCCTAATCCCAAGTTTGCCCCTGTGGCCGGATACCACTGGT
TTGATGGAGATGGCATGATTCATGGTCTGCGCATCAAAGACGGAAAGGCT
ACATATGTCTCCCGTTTTGTGAGGACTTCACGTCTTAAACAGGAAGAATT
TTTCGGAGGTGCTAAATTTATGAAGATTGGAGACCTTAAGGGGCTATTTG
GATTACTCATGGTTAACATGCAAATGCTTAGAGCAAAGTTGAAAGTACTG
GATGTTTCATATGGAAATGGGACAGCTAATACAGCTCTTGTATATCACCA
TGGGAAACTTCTAGCGCTCTCAGAGGCGGACAAACCATATGCCGTCAAAG
TTCTGGAAGATGGAGATCTGNCAACACTTGGTATGCTTGACTATGACAAG
AGATTACAACATTCCTTTAC
back to top