FC869284

Overview
NameFC869284
Unique NameFC869284
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length746
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC869284_ssr211 microsatellite FC869284_ssr211:211..222. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12766 contig Ccv1_Contig12766:219..964. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869284 vs. ExPASy Swiss-Prot
Match: HEM11_ARATH (Glutamyl-tRNA reductase 1, chloroplastic OS=Arabidopsis thaliana GN=HEMA1 PE=2 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 2.789e-55
Identity = 117/167 (70.06%), Postives = 129/167 (77.25%), Query Frame = 1
Query:  247 QSQLGQQ-IRVACKPNRNERNLQQSRRGVVRCEVAVDPSSAS------ALEQLKASAPDRYTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHGFCCITR-CSQHLFE 723
            Q+ LG   +RV  K NR  R L Q      RCE++    SAS      ALEQLK SA DRYTKERSSIVVIGLS+HTAPVEMREKLAIPEAEWPRAI ELC LNHIEEAAVLSTCNRMEIYV+ALSQHRGVKEVTEWMSKTSGIPV+E+C+H F    +  +QH+FE
Sbjct:   34 QTPLGLNGVRVLPKNNRTRRGLIQK----ARCELSASSDSASNAASISALEQLKNSAADRYTKERSSIVVIGLSIHTAPVEMREKLAIPEAEWPRAIAELCGLNHIEEAAVLSTCNRMEIYVLALSQHRGVKEVTEWMSKTSGIPVSEICQHRFLLYNKDATQHIFE 196          
BLAST of FC869284 vs. ExPASy Swiss-Prot
Match: HEM12_ARATH (Glutamyl-tRNA reductase 2, chloroplastic OS=Arabidopsis thaliana GN=HEMA2 PE=2 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 1.060e-54
Identity = 113/155 (72.90%), Postives = 125/155 (80.65%), Query Frame = 1
Query:  268 IRVACKPNRNERNLQQSRRGVVRCEVAVDPSSAS--ALEQLKASAPDRYTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHGFCCITR-CSQHLFE 723
            IR     NRN+R L Q      RCE++    +AS  ALEQLK SA DRYTKERSSIVVIGLS+HTAPVEMREKLAIPEAEWPRAI ELC LNHIEEAAVLSTCNRMEIYV+ALSQHRGVKEVTEWMSKTSGIPV+E+C+H F    +  +QH+FE
Sbjct:   37 IRALPMNNRNKRGLIQR----ARCEISPSNKAASISALEQLKTSAIDRYTKERSSIVVIGLSIHTAPVEMREKLAIPEAEWPRAIAELCGLNHIEEAAVLSTCNRMEIYVLALSQHRGVKEVTEWMSKTSGIPVSEICQHRFLLYNKDVTQHIFE 187          
BLAST of FC869284 vs. ExPASy Swiss-Prot
Match: HEM11_CUCSA (Glutamyl-tRNA reductase 1, chloroplastic OS=Cucumis sativus GN=HEMA1 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.869e-54
Identity = 117/167 (70.06%), Postives = 127/167 (76.05%), Query Frame = 1
Query:  280 CKPNRNERNLQQSRRGV-----VRCEVA----------VDP---SSASALEQLKASAPDRYTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHGFCCITR-CSQHLFE 723
            CK  R  R L Q R GV      +CE+A          +DP   S+ SALEQLK SA DRYTKERSSIVVIGLS+HT PVEMREKLAIPEAEWPRAIGELC LNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPV+E+C+H F       +QH+FE
Sbjct:   38 CKSIRTRRILFQ-RTGVSSFTPFKCELASSDVLVQNDEIDPPKSSNLSALEQLKTSAVDRYTKERSSIVVIGLSIHTTPVEMREKLAIPEAEWPRAIGELCGLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVSEICQHRFLLYNNDATQHIFE 203          
BLAST of FC869284 vs. ExPASy Swiss-Prot
Match: HEM12_CUCSA (Glutamyl-tRNA reductase 2, chloroplastic OS=Cucumis sativus GN=HEMA2 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.812e-46
Identity = 94/120 (78.33%), Postives = 104/120 (86.67%), Query Frame = 1
Query:  367 SALEQLKASAPDRYTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHGFCCI-TRCSQHLFE 723
            SALE LK S+ +RYTKER SIVVIGL+VHTAPVE+REKLAIPEA+WP  IGELC LNHIEEAAVLSTCNR+EIYVVALSQHRGVKEVTEWMSK SGIP++ELC+H      T  +QHLFE
Sbjct:   76 SALELLKTSSVNRYTKERISIVVIGLNVHTAPVELREKLAIPEAQWPPGIGELCALNHIEEAAVLSTCNRIEIYVVALSQHRGVKEVTEWMSKRSGIPISELCKHRVLLYNTDATQHLFE 195          
BLAST of FC869284 vs. ExPASy Swiss-Prot
Match: HEM11_HORVU (Glutamyl-tRNA reductase 1, chloroplastic OS=Hordeum vulgare GN=HEMA1 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.708e-42
Identity = 95/142 (66.90%), Postives = 108/142 (76.06%), Query Frame = 1
Query:  319 RRGVVRCEVAVDPSSAS------ALEQLKASAPDRYTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHGFCC-ITRCSQHLFE 723
            R GVVRC+   D  +AS      ALEQ K SA DRY KE+SSI VIGLSVHTAPVEMREKLA+ E  WPRAI EL +LNHIEEAAVLSTCNRMEIYVVALS +RG++EV +WMSK SGIP +EL EH F    +  ++HLFE
Sbjct:   37 RSGVVRCDAGGDAQAASKAASITALEQFKISA-DRYMKEKSSIAVIGLSVHTAPVEMREKLAVAEELWPRAISELTSLNHIEEAAVLSTCNRMEIYVVALSWNRGIREVVDWMSKKSGIPASELREHLFMLRDSDATRHLFE 177          
BLAST of FC869284 vs. ExPASy Swiss-Prot
Match: HEM1_ORYSJ (Glutamyl-tRNA reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os10g0502400 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.106e-41
Identity = 93/143 (65.03%), Postives = 107/143 (74.83%), Query Frame = 1
Query:  328 VVRCEVAVDP----------SSASALEQLKASAPDRYTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHGFCC-ITRCSQHLFE 723
            VVRC+  V+           +S +ALEQ K SA DRY KERSSI VIGLSVHTAPVEMREKLA+ E  WPRAI EL +LNHIEEAAVLSTCNRMEIYVVALS +RG++EV +WMSK SGIP +EL EH F    +  ++HLFE
Sbjct:   46 VVRCDAGVEAQAQAQAVAKAASVAALEQFKISA-DRYMKERSSIAVIGLSVHTAPVEMREKLAVAEELWPRAISELTSLNHIEEAAVLSTCNRMEIYVVALSWNRGIREVVDWMSKKSGIPASELREHLFMLRDSDATRHLFE 187          
BLAST of FC869284 vs. ExPASy Swiss-Prot
Match: HEM1_ORYSI (Glutamyl-tRNA reductase, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_033071 PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 5.106e-41
Identity = 93/143 (65.03%), Postives = 107/143 (74.83%), Query Frame = 1
Query:  328 VVRCEVAVDP----------SSASALEQLKASAPDRYTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHGFCC-ITRCSQHLFE 723
            VVRC+  V+           +S +ALEQ K SA DRY KERSSI VIGLSVHTAPVEMREKLA+ E  WPRAI EL +LNHIEEAAVLSTCNRMEIYVVALS +RG++EV +WMSK SGIP +EL EH F    +  ++HLFE
Sbjct:   46 VVRCDAGVEAQAQAQAVAKAASVAALEQFKISA-DRYMKERSSIAVIGLSVHTAPVEMREKLAVAEELWPRAISELTSLNHIEEAAVLSTCNRMEIYVVALSWNRGIREVVDWMSKKSGIPASELREHLFMLRDSDATRHLFE 187          
BLAST of FC869284 vs. ExPASy Swiss-Prot
Match: HEM13_HORVU (Glutamyl-tRNA reductase 3, chloroplastic OS=Hordeum vulgare GN=HEMA3 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.391e-38
Identity = 87/141 (61.70%), Postives = 104/141 (73.76%), Query Frame = 1
Query:  328 VVRCE--------VAVDPSSASALEQLKASAPDRYTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHGFCC-ITRCSQHLFE 723
            VVRC+        +A   +S +ALEQ K SA DRY KE+SSI VIGLS+HTAPVEMREKLA+ E  WPRA+ EL NLNHIE+AAVLS CNRMEIYVVALS +RG++E+ +WMS  SGIP  EL EH F    +  ++HLFE
Sbjct:   44 VVRCDAGPGVPAQMAAMAASVAALEQFKISA-DRYMKEKSSIAVIGLSIHTAPVEMREKLAVAEELWPRAVAELTNLNHIEKAAVLSPCNRMEIYVVALSWNRGIREIVDWMSMKSGIPAVELREHLFMFRDSDATRHLFE 183          
BLAST of FC869284 vs. ExPASy Swiss-Prot
Match: HEM12_HORVU (Glutamyl-tRNA reductase 2 (Fragment) OS=Hordeum vulgare GN=HEMA2 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.425e-37
Identity = 82/116 (70.69%), Postives = 94/116 (81.03%), Query Frame = 1
Query:  379 QLKASAPDRYTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHGFCC-ITRCSQHLFE 723
            Q K SA DRY KE+SSI VIGLSVHTAPV+MREKLA+ E  WPRAI EL +LNHIEEAAVLSTCNRMEIYVVALS +RG++EV +WMSK SGIP +EL EH F    +  ++HLFE
Sbjct:    1 QFKISA-DRYIKEKSSIAVIGLSVHTAPVDMREKLAVAEELWPRAISELTSLNHIEEAAVLSTCNRMEIYVVALSWNRGIREVVDWMSKKSGIPASELREHLFMLRDSGATRHLFE 115          
BLAST of FC869284 vs. ExPASy Swiss-Prot
Match: HEM1_CYAP4 (Glutamyl-tRNA reductase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=hemA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.107e-19
Identity = 46/88 (52.27%), Postives = 65/88 (73.86%), Query Frame = 1
Query:  424 SIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHGF 687
            +I V+GLS  TAPVE+REKL++PE     AI +LC+  HIEE A+LSTCNR+EIY+V      G++EVT+++S+ S +P+ EL +H F
Sbjct:    2 NIAVVGLSHKTAPVEVREKLSVPEDGLEGAIAQLCSYPHIEEVAILSTCNRLEIYIVTSETESGIREVTQFLSEWSHLPLRELRQHLF 89          
The following BLAST results are available for this feature:
BLAST of FC869284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
HEM11_ARATH2.789e-5570.06Glutamyl-tRNA reductase 1, chloroplastic OS=Arabid... [more]
HEM12_ARATH1.060e-5472.90Glutamyl-tRNA reductase 2, chloroplastic OS=Arabid... [more]
HEM11_CUCSA6.869e-5470.06Glutamyl-tRNA reductase 1, chloroplastic OS=Cucumi... [more]
HEM12_CUCSA1.812e-4678.33Glutamyl-tRNA reductase 2, chloroplastic OS=Cucumi... [more]
HEM11_HORVU2.708e-4266.90Glutamyl-tRNA reductase 1, chloroplastic OS=Hordeu... [more]
HEM1_ORYSJ5.106e-4165.03Glutamyl-tRNA reductase, chloroplastic OS=Oryza sa... [more]
HEM1_ORYSI5.106e-4165.03Glutamyl-tRNA reductase, chloroplastic OS=Oryza sa... [more]
HEM13_HORVU1.391e-3861.70Glutamyl-tRNA reductase 3, chloroplastic OS=Hordeu... [more]
HEM12_HORVU3.425e-3770.69Glutamyl-tRNA reductase 2 (Fragment) OS=Hordeum vu... [more]
HEM1_CYAP41.107e-1952.27Glutamyl-tRNA reductase OS=Cyanothece sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC31010E09EF AbioticL1 Citrus clementina cDNA clone C31010E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869284 ID=FC869284; Name=FC869284; organism=Citrus clementina; type=EST; length=746bp
GATTTGTTCAACATTCCATAAAACCTCTGTATACCCTCCCATCCGGCCTC
AATTTTTTTGAGGGGTCTGGGGGTTTTATCATTATTATCATTAGGGCACA
AGATAATTTTTGAACGAAGATTCAGAATCATGTCGTTTTCAAGTGGATTT
GCCACCGCTTTGGCCGGTTCAAAGATGGAAACAACTTTGTTATTCAATCT
TTCTTCTTCCTCTTCTTCTTCTTCAGCGTTGTTTATGAAGGGTGTTCAAA
GTCAACTCGGTCAACAAATACGGGTGGCTTGTAAACCAAATCGGAACGAG
AGAAATTTGCAGCAGAGCCGGAGAGGCGTTGTTAGATGCGAAGTCGCAGT
TGATCCCTCCTCCGCTTCCGCCCTCGAGCAGCTCAAGGCCTCTGCCCCTG
ACCGATACACGAAGGAAAGGAGCAGCATTGTGGTCATTGGGCTCAGTGTT
CACACTGCACCTGTTGAGATGCGAGAAAAACTTGCCATTCCTGAGGCTGA
ATGGCCACGGGCCATCGGAGAGTTGTGTAACTTAAATCATATAGAGGAGG
CCGCTGTCCTTAGCACCTGCAACAGAATGGAGATATATGTTGTAGCTCTC
TCTCAGCATCGTGGAGTCAAAGAAGTGACTGAGTGGATGTCAAAGACAAG
TGGGATCCCCGTTGCAGAGCTTTGTGAGCACGGTTTTTGCTGTATAACAA
GATGCTCACAGCATCTCTTTGAGTATCACGGGTCTTGATCCCTTGT
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