FC869292

Overview
NameFC869292
Unique NameFC869292
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14383 contig Ccv1_Contig14383:512..1254. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYE_IPONI (Phytochrome E OS=Ipomoea nil GN=PHYE PE=2 SV=1)

HSP 1 Score: 352.058 bits (902), Expect = 1.895e-96
Identity = 168/242 (69.42%), Postives = 201/242 (83.06%), Query Frame = 2
Query:    2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFGSFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKVL 727
            VRL+ETAT PIFGVDSSG INGWNAK+AELTGL A+ A+GK LID+V HE+S    + L+CRAL G+ED+NVE+KL KF       VVY++VNACTSRDYKN++ GVCFVGQDIT EK +MDKF+RLQGDYEAIIQS+NPLIPPIFASDENACCSEWN AME++TG ++ EVIGK LP EIFG  CR+KGQD LTKFMILLYQGI+G  TE   FGFF+R+G F++V +TA++RTD  G ++
Sbjct:  603 VRLVETATVPIFGVDSSGLINGWNAKIAELTGLQANVAIGKYLIDDVTHEDSHETFKALMCRALQGEEDRNVEVKLLKFGNHPTKEVVYLVVNACTSRDYKNDIIGVCFVGQDITPEKAVMDKFVRLQGDYEAIIQSLNPLIPPIFASDENACCSEWNAAMERLTGLVKCEVIGKRLPGEIFGGLCRLKGQDALTKFMILLYQGISGHDTEKLSFGFFDRKGNFIDVFITANKRTDERGNII 844          
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYE_ARATH (Phytochrome E OS=Arabidopsis thaliana GN=PHYE PE=1 SV=1)

HSP 1 Score: 333.954 bits (855), Expect = 5.340e-91
Identity = 165/247 (66.80%), Postives = 201/247 (81.38%), Query Frame = 2
Query:    2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQH----SVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFGSFCRMKGQDMLTKFMILLYQGITGQGT-ENFPFGFFNRQGQFVEVTLTASRRTDAXGKVL 727
            VR+IETATAPIFGVDSSG INGWN K AE+TGL ASEAMGKSL DE+V EES+ A+E+L+C+AL G+E+K+V LKLRKF  Q  H    S V +LVN+CTSRDY  N+ GVCFVGQDIT EK + D+FIRLQGDY+ I+QS+NPLIPPIFASDENACCSEWN AMEK+TGW +HEVIGKMLP E+FG FC++K QD LTKF+I LYQGI G    E+    FFN++G+++E +LTA++ T+  GKV+
Sbjct:  600 VRVIETATAPIFGVDSSGCINGWNKKTAEMTGLLASEAMGKSLADEIVQEESRAALESLLCKALQGEEEKSVMLKLRKFG-QNNHPDYSSDVCVLVNSCTSRDYTENIIGVCFVGQDITSEKAITDRFIRLQGDYKTIVQSLNPLIPPIFASDENACCSEWNAAMEKLTGWSKHEVIGKMLPGEVFGVFCKVKCQDSLTKFLISLYQGIAGDNVPESSLVEFFNKEGKYIEASLTANKSTNIEGKVI 845          
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYB_SOLTU (Phytochrome B OS=Solanum tuberosum GN=PHYB PE=3 SV=2)

HSP 1 Score: 330.872 bits (847), Expect = 4.521e-90
Identity = 155/244 (63.52%), Postives = 192/244 (78.69%), Query Frame = 2
Query:    2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFGSFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKVLAA 733
            VRLIETATAPIF VD  G INGWNAKVAELTG+   EAMGKSL+ ++V++ESQ   E L+  AL G+EDKNVE+KLR F  ++    V+++VNAC S+DY NN+ GVCFVGQD+T EKV+MDKFI +QGDY+AI+ S NPLIPPIFASDEN CCSEWNTAMEK+TGW R E++GKML  EIFGS CR+KG D +TKFMI+L+  I GQ T+ FPF FF+R G++V+  LTA++R +  G  + A
Sbjct:  626 VRLIETATAPIFAVDVEGRINGWNAKVAELTGVSVEEAMGKSLVHDLVYKESQETAEKLLYNALRGEEDKNVEIKLRTFGAEQLEKAVFVVVNACASKDYTNNIVGVCFVGQDVTGEKVVMDKFINIQGDYKAIVHSPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEIVGKMLVGEIFGSCCRLKGPDAMTKFMIVLHNAIGGQDTDKFPFSFFDRNGKYVQALLTANKRVNMEGDTIGA 869          
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYB_TOBAC (Phytochrome B OS=Nicotiana tabacum GN=PHYB PE=2 SV=2)

HSP 1 Score: 328.561 bits (841), Expect = 2.244e-89
Identity = 155/244 (63.52%), Postives = 193/244 (79.10%), Query Frame = 2
Query:    2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFGSFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKVLAA 733
            VRLIETATAPIF VD  G INGWNAKVAELT L   EAMGKSL+ ++VH+ESQ   E L+  AL G+EDKNVE+KLR F  ++    V+++VNAC+S+DY NN+ GVCFVGQD+T +KV+MDKFI +QGDY+AI+ S NPLIPPIFASDEN CCSEWNTAMEK+TGW R E+IGKML  EIFGS CR+KG D +TKFMI+L+  I  Q T+ FPF FF+R G++V+  LTA++R +  G+++ A
Sbjct:  628 VRLIETATAPIFAVDVEGRINGWNAKVAELTDLSVEEAMGKSLVHDLVHKESQETAEKLLFNALRGEEDKNVEIKLRTFGPEQLKKAVFVVVNACSSKDYTNNIVGVCFVGQDVTGQKVVMDKFIHIQGDYKAIVHSPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEIIGKMLVGEIFGSCCRLKGPDAMTKFMIVLHNAIGVQDTDKFPFSFFDRNGKYVQALLTANKRVNMEGQIIGA 871          
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYB_ARATH (Phytochrome B OS=Arabidopsis thaliana GN=PHYB PE=1 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 5.526e-88
Identity = 149/244 (61.07%), Postives = 191/244 (78.28%), Query Frame = 2
Query:    2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFGSFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKVLAA 733
            VRLIETAT PIF VD+ G INGWNAK+AELTGL   EAMGKSL+ +++++E++  V  L+ RAL G E+KNVE+KL+ F  + Q   V+++VNAC+S+DY NN+ GVCFVGQD+T +K++MDKFI +QGDY+AI+ S NPLIPPIFA+DEN CC EWN AMEK+TGW R EVIGKM+  E+FGS C +KG D LTKFMI+L+  I GQ T+ FPF FF+R G+FV+  LTA++R    GKV+ A
Sbjct:  657 VRLIETATVPIFAVDAGGCINGWNAKIAELTGLSVEEAMGKSLVSDLIYKENEATVNKLLSRALRGDEEKNVEVKLKTFSPELQGKAVFVVVNACSSKDYLNNIVGVCFVGQDVTSQKIVMDKFINIQGDYKAIVHSPNPLIPPIFAADENTCCLEWNMAMEKLTGWSRSEVIGKMIVGEVFGSCCMLKGPDALTKFMIVLHNAIGGQDTDKFPFPFFDRNGKFVQALLTANKRVSLEGKVIGA 900          
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYB_SORBI (Phytochrome B OS=Sorghum bicolor GN=PHYB PE=3 SV=2)

HSP 1 Score: 323.168 bits (827), Expect = 9.426e-88
Identity = 148/244 (60.66%), Postives = 193/244 (79.10%), Query Frame = 2
Query:    2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFGSFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKVLAA 733
            VRLIETAT PIF VD+ G INGWNAK+AELTGL   EAMGKSL+++++ +ES+  VE L+ RAL G+EDKNVE+KL+ F  ++ +  ++++VNAC+SRDY  N+ GVCFVGQD+T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN  CSEWNTAMEK+TGW R EV+GK L  E+FGSFCR+KG D LTKFM++++  I GQ  E FPF FF++ G++V+  LTA+ R+   GK + A
Sbjct:  673 VRLIETATVPIFAVDTDGCINGWNAKIAELTGLSVEEAMGKSLVNDLIFKESEEIVEKLLSRALRGEEDKNVEIKLKTFGSEQSNGAIFVIVNACSSRDYTQNIVGVCFVGQDVTGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTSCSEWNTAMEKLTGWSRGEVVGKFLIGEVFGSFCRLKGPDALTKFMVVIHNAIGGQDYEKFPFSFFDKNGKYVQALLTANTRSKMDGKSIGA 916          
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHY_PINSY (Phytochrome OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 1.608e-87
Identity = 154/241 (63.90%), Postives = 191/241 (79.25%), Query Frame = 2
Query:    2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFGSFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKV 724
            VRLIETATAPI  VD +G +NGWNAKVAELTGLP  EAMG SL+ ++V E+S   VE ++  AL G+E+KNVE+ L+ F  QK+   V ++VNAC+SRD+ +N+ GVCFVGQD+T +KV+MDKFIR+QGDY +I+QS NPLIPPIFASDE ACCSEWN AMEKVTGW   EVIGKML  EIFG  CR+KGQD +TKF I+L+Q   GQ  E FPF FF++QG++VE  LTA++RTDA G++
Sbjct:  626 VRLIETATAPILAVDYNGLVNGWNAKVAELTGLPVGEAMGMSLVQDLVFEQSVERVEKMLHNALRGEEEKNVEMMLKTFGPQKEKEAVILVVNACSSRDFTDNIVGVCFVGQDVTSQKVVMDKFIRIQGDYRSIVQSPNPLIPPIFASDEYACCSEWNAAMEKVTGWTHDEVIGKMLVGEIFGGCCRLKGQDAVTKFTIVLHQCNHGQEIEKFPFAFFDKQGKYVEALLTANKRTDADGRI 866          
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYD_ARATH (Phytochrome D OS=Arabidopsis thaliana GN=PHYD PE=1 SV=2)

HSP 1 Score: 320.472 bits (820), Expect = 6.110e-87
Identity = 148/244 (60.66%), Postives = 191/244 (78.28%), Query Frame = 2
Query:    2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFGSFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKVLAA 733
            VRLIETAT PIF VD  G INGWNAK+AELTGL   +AMGKSL+ E++++E +  V+ L+  AL G E KNVE+KL+ F  + Q   ++++VNAC+S+DY NN+ GVCFVGQD+T  K++MDKFI +QGDY+AII S NPLIPPIFA+DEN CC EWNTAMEK+TGW R EVIGK+L RE+FGS+CR+KG D LTKFMI+L+  I GQ T+ FPF FF+R+G+F++  LT ++R    GK++ A
Sbjct:  661 VRLIETATVPIFAVDIDGCINGWNAKIAELTGLSVEDAMGKSLVRELIYKEYKETVDRLLSCALKGDEGKNVEVKLKTFGSELQGKAMFVVVNACSSKDYLNNIVGVCFVGQDVTGHKIVMDKFINIQGDYKAIIHSPNPLIPPIFAADENTCCLEWNTAMEKLTGWPRSEVIGKLLVREVFGSYCRLKGPDALTKFMIVLHNAIGGQDTDKFPFPFFDRKGEFIQALLTLNKRVSIDGKIIGA 904          
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYB_ORYSJ (Phytochrome B OS=Oryza sativa subsp. japonica GN=PHYB PE=2 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 6.110e-87
Identity = 148/244 (60.66%), Postives = 191/244 (78.28%), Query Frame = 2
Query:    2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFGSFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKVLAA 733
            VRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+  V  L+ RAL G EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWNTAMEK+TGW R EV+GK+L  E+FG+ CR+KG D LTKFMI+L+  I GQ  E FPF FF++ G++V+  LTA+ R+   G+ + A
Sbjct:  666 VRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEETVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDVTGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVGKLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTRSRMDGEAIGA 909          
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYB_ORYSI (Phytochrome B OS=Oryza sativa subsp. indica GN=PHYB PE=3 SV=2)

HSP 1 Score: 320.472 bits (820), Expect = 6.110e-87
Identity = 148/244 (60.66%), Postives = 191/244 (78.28%), Query Frame = 2
Query:    2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFGSFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKVLAA 733
            VRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+  V  L+ RAL G EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWNTAMEK+TGW R EV+GK+L  E+FG+ CR+KG D LTKFMI+L+  I GQ  E FPF FF++ G++V+  LTA+ R+   G+ + A
Sbjct:  666 VRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEETVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDVTGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVGKLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTRSRMDGEAIGA 909          
The following BLAST results are available for this feature:
BLAST of FC869292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
PHYE_IPONI1.895e-9669.42Phytochrome E OS=Ipomoea nil GN=PHYE PE=2 SV=1[more]
PHYE_ARATH5.340e-9166.80Phytochrome E OS=Arabidopsis thaliana GN=PHYE PE=1... [more]
PHYB_SOLTU4.521e-9063.52Phytochrome B OS=Solanum tuberosum GN=PHYB PE=3 SV... [more]
PHYB_TOBAC2.244e-8963.52Phytochrome B OS=Nicotiana tabacum GN=PHYB PE=2 SV... [more]
PHYB_ARATH5.526e-8861.07Phytochrome B OS=Arabidopsis thaliana GN=PHYB PE=1... [more]
PHYB_SORBI9.426e-8860.66Phytochrome B OS=Sorghum bicolor GN=PHYB PE=3 SV=2[more]
PHY_PINSY1.608e-8763.90Phytochrome OS=Pinus sylvestris PE=2 SV=1[more]
PHYD_ARATH6.110e-8760.66Phytochrome D OS=Arabidopsis thaliana GN=PHYD PE=1... [more]
PHYB_ORYSJ6.110e-8760.66Phytochrome B OS=Oryza sativa subsp. japonica GN=P... [more]
PHYB_ORYSI6.110e-8760.66Phytochrome B OS=Oryza sativa subsp. indica GN=PHY... [more]

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Properties
Property NameValue
Genbank descriptionC31010F05EF AbioticL1 Citrus clementina cDNA clone C31010F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869292 ID=FC869292; Name=FC869292; organism=Citrus clementina; type=EST; length=743bp
GGTTAGATTGATTGAGACAGCCACAGCTCCAATTTTTGGAGTTGACTCAT
CTGGTACCATCAATGGGTGGAATGCAAAAGTTGCCGAATTGACAGGATTA
CCAGCTAGTGAAGCCATGGGGAAGTCTCTAATTGATGAAGTAGTTCATGA
GGAATCTCAGGGAGCTGTTGAAAATCTTATCTGCCGAGCTCTGCTTGGCA
AGGAGGACAAAAATGTTGAATTAAAACTGAGAAAGTTTGAGCTTCAAAAG
CAACACTCAGTTGTTTATATTCTAGTTAATGCCTGCACAAGTAGGGATTA
CAAGAATAATGTCAAAGGGGTGTGCTTCGTGGGTCAAGACATCACACATG
AGAAGGTTCTTATGGATAAATTCATCCGCTTGCAAGGGGATTATGAGGCT
ATCATACAAAGTGTTAATCCATTGATTCCACCAATATTTGCTTCTGATGA
GAATGCATGCTGTTCTGAATGGAATACTGCCATGGAAAAGGTGACTGGTT
GGATGAGACATGAGGTGATAGGTAAAATGCTTCCGAGGGAAATCTTCGGA
AGTTTCTGTCGAATGAAAGGTCAGGATATGCTCACTAAATTTATGATTCT
GTTGTATCAAGGAATTACTGGTCAAGGTACAGAGAACTTCCCTTTTGGAT
TTTTCAATAGACAAGGACAGTTTGTTGAGGTGACCTTAACTGCAAGTAGA
AGGACTGATGCTGANGGGAAAGTATTGGCTGCTTCTGCTTCAT
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