FC869293

Overview
NameFC869293
Unique NameFC869293
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_TOBAC (Dihydrodipicolinate synthase, chloroplastic OS=Nicotiana tabacum GN=DHPS1 PE=2 SV=1)

HSP 1 Score: 357.836 bits (917), Expect = 3.375e-98
Identity = 175/203 (86.21%), Postives = 187/203 (92.12%), Query Frame = 2
Query:  134 SVSCTGKNRK---WRPPQAAIIPNYHLPMRSFEVKNRTSAEDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            S+   G  R+   WR P+AA+IP++HLPMRS EVKNRT A+DIKALRLITAIKTPYLPDGRFDLEAYD LVN+QI NGAEG+IVGGTTGEGQLMSWDEHIMLIGHTVNCFG S+KVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHF+SVL MGPTIIYNVPSRTGQDIPPRVI TMA+SPNLAGVKE
Sbjct:   15 SIEAAGTKRRTTRWRSPRAAVIPSFHLPMRSNEVKNRTFADDIKALRLITAIKTPYLPDGRFDLEAYDTLVNLQIENGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFESVLPMGPTIIYNVPSRTGQDIPPRVIQTMAKSPNLAGVKE 217          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA2_ARATH (Dihydrodipicolinate synthase 2, chloroplastic OS=Arabidopsis thaliana GN=DHDPS2 PE=2 SV=2)

HSP 1 Score: 348.977 bits (894), Expect = 1.568e-95
Identity = 166/204 (81.37%), Postives = 184/204 (90.20%), Query Frame = 2
Query:  122 CGPVSVSCTGKNRKWRPPQAAIIPNYHLPMRSFEVKNRTSAEDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            C  +  S   ++ KW  P+AA++PN+HLPMRS EVKNRT+ +DIKALR+ITAIKTPYLPDGRFDLEAYDDLVN+QI NGAEG+IVGGTTGEGQLMSWDEHIMLIGHTVNCFG S+KVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTS+EGLI+HF SVL MGPTIIYNVP RTGQDIPPR I  ++Q+PNLAGVKE
Sbjct:   20 CPKLFNSYKRRSSKWVSPKAAVVPNFHLPMRSLEVKNRTNTDDIKALRVITAIKTPYLPDGRFDLEAYDDLVNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSIEGLIAHFQSVLHMGPTIIYNVPGRTGQDIPPRAIFKLSQNPNLAGVKE 223          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_SOYBN (Dihydrodipicolinate synthase, chloroplastic OS=Glycine max GN=DHPS1 PE=2 SV=1)

HSP 1 Score: 333.954 bits (855), Expect = 5.219e-91
Identity = 160/185 (86.49%), Postives = 174/185 (94.05%), Query Frame = 2
Query:  179 AAIIPNYHLPMRSFEVKNRTSAEDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            AA+ PN+HLPMRSFE+KNRTS EDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQI  GAEG+IVGGTTGEGQLMSW+EHI+LI HTVNCFG  +KVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSL+G+++HF SVLSMGPTIIYNVP+RTGQDIPP VI T+A+S NLAGVKE
Sbjct:    6 AAVKPNFHLPMRSFELKNRTSPEDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIGQGAEGVIVGGTTGEGQLMSWEEHIILIAHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLDGMVAHFRSVLSMGPTIIYNVPARTGQDIPPHVIQTLAESVNLAGVKE 190          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA1_ARATH (Dihydrodipicolinate synthase 1, chloroplastic OS=Arabidopsis thaliana GN=DHDPS1 PE=2 SV=2)

HSP 1 Score: 328.561 bits (841), Expect = 2.193e-89
Identity = 153/194 (78.87%), Postives = 175/194 (90.21%), Query Frame = 2
Query:  152 KNRKWRPPQAAIIPNYHLPMRSFEVKNRTSAEDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            +N KW  P AA++PN+HLPMRS E KNRT+ +DI++LR+ITAIKTPYLPDGRFDL+AYDDLVN QI NGAEG+IVGGTTGEGQLMSWDEHIMLIGHTVNCFG  +KVIGNTGSNSTREAIHATEQGFA+GMH ALHINPYYGKTS+EG+ +HF +VL MGPTIIYNVP RT QDIPP+VI  ++Q+PN+AGVKE
Sbjct:   30 RNAKWVSPIAAVVPNFHLPMRSLEDKNRTNTDDIRSLRVITAIKTPYLPDGRFDLQAYDDLVNTQIENGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGRIKVIGNTGSNSTREAIHATEQGFAMGMHGALHINPYYGKTSIEGMNAHFQTVLHMGPTIIYNVPGRTCQDIPPQVIFKLSQNPNMAGVKE 223          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA2_WHEAT (Dihydrodipicolinate synthase 2, chloroplastic OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 3.623e-84
Identity = 150/185 (81.08%), Postives = 164/185 (88.65%), Query Frame = 2
Query:  179 AAIIPNYHLPMRSFEVKNRTSAEDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            AAI  + +LPMRS EVKNRTS + IK+LRLITA+KTPYLPDGRFDLEAYD L+N QI  GAEG+IVGGTTGEG LMSWDEHIMLIGHTVNCFG ++KVIGNTGSNSTREAIHA+EQGFAVGMHAALH+NPYYGKTS  GLISHFD VL MGPTIIYNVPSRTGQDIPP VI  ++  PN+AGVKE
Sbjct:   51 AAITTDDYLPMRSTEVKNRTSVDGIKSLRLITAVKTPYLPDGRFDLEAYDSLINTQINGGAEGVIVGGTTGEGHLMSWDEHIMLIGHTVNCFGTNIKVIGNTGSNSTREAIHASEQGFAVGMHAALHVNPYYGKTSTAGLISHFDEVLPMGPTIIYNVPSRTGQDIPPAVIEALSTYPNMAGVKE 235          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA1_WHEAT (Dihydrodipicolinate synthase 1, chloroplastic OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.377e-83
Identity = 152/202 (75.25%), Postives = 169/202 (83.66%), Query Frame = 2
Query:  128 PVSVSCTGKNRKWRPPQAAIIPNYHLPMRSFEVKNRTSAEDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            PVS     +  K +   AA+  + +LPMRS EVKNRTS + IK+LRLITA+KTPYLPDGRFDLEAYD L+N QI  GAEG+IVGGTTGEG LMSWDEHIMLIGHTVNCFGA++KVIGNTGSNSTREA+HATEQGFAVGMHAALH+NPYYGKTS EGLISHF  VL MGPTIIYNVPSRT QDIPP VI  ++   N+AGVKE
Sbjct:   45 PVSGHSASRVSKGKFAVAAVTLDDYLPMRSTEVKNRTSTDGIKSLRLITAVKTPYLPDGRFDLEAYDSLINTQINGGAEGVIVGGTTGEGHLMSWDEHIMLIGHTVNCFGANIKVIGNTGSNSTREAVHATEQGFAVGMHAALHVNPYYGKTSTEGLISHFKEVLPMGPTIIYNVPSRTSQDIPPPVIEALSSYSNMAGVKE 246          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_MAIZE (Dihydrodipicolinate synthase, chloroplastic OS=Zea mays PE=1 SV=2)

HSP 1 Score: 305.834 bits (782), Expect = 1.522e-82
Identity = 148/185 (80.00%), Postives = 164/185 (88.65%), Query Frame = 2
Query:  179 AAIIPNYHLPMRSFEVKNRTSAEDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            AAI  + +LPMRS EVKNRTS +DI  LRLITA+KTPYLPDGRFDLEAYD L+NMQI  GAEG+IVGGTTGEG LMSWDEHIMLIGHTVNCFG+ +KVIGNTGSNSTREA+HATEQGFAVGMHAALHINPYYGKTS EG+ISHF++VL MGPTIIYNVPSR+ QDIPP VI  ++   N+AGVKE
Sbjct:   54 AAITLDDYLPMRSTEVKNRTSTDDITRLRLITAVKTPYLPDGRFDLEAYDSLINMQIEGGAEGVIVGGTTGEGHLMSWDEHIMLIGHTVNCFGSRIKVIGNTGSNSTREAVHATEQGFAVGMHAALHINPYYGKTSAEGMISHFEAVLPMGPTIIYNVPSRSAQDIPPEVILAISGYTNMAGVKE 238          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_COILA (Dihydrodipicolinate synthase, chloroplastic OS=Coix lachryma-jobi GN=DAPA PE=3 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 1.522e-82
Identity = 148/185 (80.00%), Postives = 165/185 (89.19%), Query Frame = 2
Query:  179 AAIIPNYHLPMRSFEVKNRTSAEDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            +AI  + +LPMRS EVKNRTS +DI +LRLITA+KTPYLPDGRFDLEAYD L+NMQI  GAEG+IVGGTTGEG LMSWDEHIMLIGHTVNCFG+ +KVIGNTGSNSTREA+HATEQGFAVGMHAALHINPYYGKTS EG+ISHF+SVL MGPTIIYNVPSR+ QDIPP VI  ++   N+AGVKE
Sbjct:   51 SAITLDDYLPMRSTEVKNRTSTDDITSLRLITAVKTPYLPDGRFDLEAYDSLINMQIEGGAEGVIVGGTTGEGHLMSWDEHIMLIGHTVNCFGSRIKVIGNTGSNSTREAVHATEQGFAVGMHAALHINPYYGKTSTEGMISHFESVLPMGPTIIYNVPSRSAQDIPPEVIVAISGYINMAGVKE 235          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_CYAP4 (Dihydrodipicolinate synthase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dapA PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.681e-29
Identity = 61/160 (38.12%), Postives = 93/160 (58.13%), Query Frame = 2
Query:  263 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSV---LSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            R+ITA+ TP+ P+G  +    + L    + +G+EG+++ GTTGE   +SWDE   L            K+I  TGSNST EAI A+++   +G+  AL + PYY K   EGL  HF ++   +   P ++YN+P RTGQ++ P  I  +A+ PN+  +KE
Sbjct:    6 RVITAMVTPFTPEGEVNYSVAEQLAGHLVEHGSEGLVICGTTGESPTLSWDEEFQLFRTVQQAVAGKAKIIAGTGSNSTHEAIAASQKAAQLGLDGALLVVPYYNKPPQEGLYQHFRAIAQAVPEFPLMLYNIPGRTGQNLLPETIARLAELPNIVAIKE 165          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_THEEB (Dihydrodipicolinate synthase OS=Thermosynechococcus elongatus (strain BP-1) GN=dapA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.819e-28
Identity = 61/160 (38.12%), Postives = 91/160 (56.88%), Query Frame = 2
Query:  263 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            R+ITA+ TP+  DG    +    L    + NG++G++V GTTGE   ++W+E   L            K+I  TGSNSTREAI AT +   +G+  AL + PYY K   EGL +HF ++       P ++YN+P RTGQ++ P  +  +A+ PN+  +KE
Sbjct:    6 RVITAMITPFTADGAIAYDVAAKLAQHLVANGSDGIVVCGTTGESPTLTWEEEFQLFQTVQQAVAGKAKIIAGTGSNSTREAIDATAKAAELGLDGALLVVPYYNKPPQEGLYAHFQAIAKAVPDFPLMLYNIPGRTGQNLLPETVIRLAEYPNIVAIKE 165          
The following BLAST results are available for this feature:
BLAST of FC869293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 490
Match NameE-valueIdentityDescription
DAPA_TOBAC3.375e-9886.21Dihydrodipicolinate synthase, chloroplastic OS=Nic... [more]
DAPA2_ARATH1.568e-9581.37Dihydrodipicolinate synthase 2, chloroplastic OS=A... [more]
DAPA_SOYBN5.219e-9186.49Dihydrodipicolinate synthase, chloroplastic OS=Gly... [more]
DAPA1_ARATH2.193e-8978.87Dihydrodipicolinate synthase 1, chloroplastic OS=A... [more]
DAPA2_WHEAT3.623e-8481.08Dihydrodipicolinate synthase 2, chloroplastic OS=T... [more]
DAPA1_WHEAT1.377e-8375.25Dihydrodipicolinate synthase 1, chloroplastic OS=T... [more]
DAPA_MAIZE1.522e-8280.00Dihydrodipicolinate synthase, chloroplastic OS=Zea... [more]
DAPA_COILA1.522e-8280.00Dihydrodipicolinate synthase, chloroplastic OS=Coi... [more]
DAPA_CYAP45.681e-2938.13Dihydrodipicolinate synthase OS=Cyanothece sp. (st... [more]
DAPA_THEEB2.819e-2838.13Dihydrodipicolinate synthase OS=Thermosynechococcu... [more]

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Properties
Property NameValue
Genbank descriptionC31010F06EF AbioticL1 Citrus clementina cDNA clone C31010F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869293 ID=FC869293; Name=FC869293; organism=Citrus clementina; type=EST; length=735bp
TGGCCGGAGAAAGTGTGTGCACTGACCTCCCGAGCCTTCGGAGACTTGAC
TGCCTAAAACTGAGAAGAAAAGGAAAGAGGAAATGGTTCACTTGAATGCG
TGCGAGTTGAACCTCAGTAACTGCGGACCCGTCTCTGTCTCTTGCACCGG
GAAAAACCGGAAATGGAGACCCCCTCAAGCAGCTATAATTCCCAATTACC
ATCTTCCAATGCGTAGTTTTGAGGTTAAAAACAGGACATCTGCAGAGGAT
ATAAAGGCACTTAGATTGATAACTGCCATCAAAACGCCATATCTACCAGA
TGGCAGATTTGATCTTGAAGCTTATGATGACCTAGTGAATATGCAGATCG
TAAATGGTGCTGAAGGTATGATTGTTGGTGGCACAACTGGTGAAGGCCAA
CTCATGAGCTGGGATGAACATATAATGCTTATTGGTCACACAGTGAACTG
CTTTGGCGCCTCAGTAAAGGTAATTGGAAATACTGGAAGCAACTCCACCA
GGGAAGCAATTCATGCTACTGAACAAGGTTTTGCAGTTGGTATGCATGCA
GCACTACACATAAATCCTTACTATGGCAAAACTTCCTTGGAGGGCTTGAT
TTCTCACTTTGATAGTGTGTTGTCCATGGGCCCCACCATTATATACAATG
TGCCGTCACGAACTGGTCAAGATATTCCTCCGCGTGTGATTCACACAATG
GCACAGAGTCCGAACCTGGCTGGTGTCAAGGAATG
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