FC869294
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC869294 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1) HSP 1 Score: 171.014 bits (432), Expect = 5.469e-42 Identity = 92/178 (51.69%), Postives = 122/178 (68.54%), Query Frame = 1 Query: 172 SNSKFCSSNFLMEGELPKLK--DGALYNKSSILLELSASDDISAYKREIEEK-GFDVDEPSF*YGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGTKSSFEVVKLLLSASADVNCVDAYGNKLVDLIPVAMKSPLHSRKRAIELLLKGDH 696 + S CSS L E E + K DGA ++ LLE +A DD+S++KREIEE ++DE F Y RR+GSKKMGFEERTP+M+AAM+GS+ VL Y+I TG+ DVNR C + TALHCAV+G + S E++K+LL ASA NCVDA GNK VDL+ + + ++A+E+LL G H Sbjct: 4 AKSNLCSSKTLTEVEFMRQKSEDGA---SATCLLEFAACDDLSSFKREIEENPSVEIDESGFWYCRRVGSKKMGFEERTPLMVAAMYGSMEVLNYIIATGRSDVNRVCSDEKVTALHCAVSGCSVSIVEIIKILLDASASPNCVDANGNKPVDLLAKDSRFVPNQSRKAVEVLLTGIH 178
BLAST of FC869294 vs. ExPASy Swiss-Prot
Match: C3H47_ARATH (Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 1.759e-40 Identity = 85/171 (49.71%), Postives = 118/171 (69.01%), Query Frame = 1 Query: 178 SKFCSSNFLMEGELPKLKDGALYNKSSILLELSASDDISAYKREIEEKGFDVDEPSF*YGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGTKSSFEVVKLLLSASADVNCVDAYGNKLVDLIPVAMKSPLHSRKRAIELLLKG 690 S CSS L E E + ++ ++ +LLE +A DD+ ++KRE+EEKG D+DE Y RR+GSKKMG EERTP+M+AAM+GS+ VL +++ TGK DVNRACG + T LHCAVAG + + EV+ +LL ASA VN VDA GN+ +D+ + R++A+ELLL+G Sbjct: 7 SNLCSSRTLTEIESRQKEE-----ETMLLLEFAACDDLDSFKREVEEKGLDLDESGLWYCRRVGSKKMGLEERTPLMVAAMYGSIKVLTFIVSTGKSDVNRACGEERVTPLHCAVAGCSVNMIEVINVLLDASALVNSVDANGNQPLDVFVRVSRFVASPRRKAVELLLRG 172
BLAST of FC869294 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 3.669e-38 Identity = 82/149 (55.03%), Postives = 108/149 (72.48%), Query Frame = 1 Query: 250 KSSILLELSASDDISAYKREIEEKGFD-VDEPSF*YGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGTKSSFEVVKLLLSASADVNCVDAYGNKLVDLIPVAMKSPLHSRKRAIELLLKGD 693 K S+LLE SA +D+S +K +EE+G + +D YGRR+GSKKMGFEERTP+MIAA+FGS V+ Y+I TG VDVNR+CGSDG TALHCAV+G + +S E+V LLL SA+ + DAYGNK D+I + +R + +E LLKG+ Sbjct: 10 KFSLLLESSACNDLSGFKSLVEEEGLESIDGSGLWYGRRLGSKKMGFEERTPLMIAALFGSKEVVDYIISTGLVDVNRSCGSDGATALHCAVSGLSANSLEIVTLLLKGSANPDSCDAYGNKPGDVIFPCLSPVFSARMKVLERLLKGN 158
BLAST of FC869294 vs. ExPASy Swiss-Prot
Match: C3H30_ARATH (Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2) HSP 1 Score: 121.324 bits (303), Expect = 4.970e-27 Identity = 66/144 (45.83%), Postives = 92/144 (63.89%), Query Frame = 1 Query: 262 LLELSASDDISAYKREIEEKGFDVDEPSF*YGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGTKSSFEVVKLLLSASADVNCVDAYGNKLVDLIPVAMKSPLHSRKRAIELLLKGD 693 LLEL+A++D+ + IE VDE YGR+ GSK M + RTP+M+AA +GS+ V+K ++ DVNRACG+D TALHCA +GG ++ +VVKLLL+A AD+N +DA G + D+I V K L K ++ LL D Sbjct: 48 LLELAANNDVEGVRLSIERDPSCVDEAGLWYGRQKGSKAMVNDYRTPLMVAATYGSIDVIKLIVSLTDADVNRACGNDQTTALHCAASGGAVNAIQVVKLLLAAGADLNLLDAEGQRAGDVIVVPPK--LEGVKLMLQELLSAD 189
BLAST of FC869294 vs. ExPASy Swiss-Prot
Match: C3H24_ORYSJ (Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.496e-23 Identity = 66/142 (46.48%), Postives = 85/142 (59.86%), Query Frame = 1 Query: 262 LLELSASDDISAYKREIEEKG-FDVDEPSF*YGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGTKSSFEVVKLLLSASADVNCVDAYGNKLVDLIPVAMKSPLHSRKRAIELLL 684 LLEL+A DD +R +E DE YGRR E RTP+M+AA +GS+AVL+ ++ VDVNR CGSDG TALHCA +GG+ S E VKLLL+A AD + DA G + D+I V K + K A++ LL Sbjct: 70 LLELAADDDAEGLRRALERAPPAAADEAGLWYGRR-----KVLEHRTPLMVAATYGSLAVLRLLLSLPSVDVNRRCGSDGTTALHCAASGGSPSCVEAVKLLLAAGADADATDASGYRPADVISVPPK--MFDAKIALQDLL 204
BLAST of FC869294 vs. ExPASy Swiss-Prot
Match: C3H56_ARATH (Zinc finger CCCH domain-containing protein 56 OS=Arabidopsis thaliana GN=At5g12850 PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.954e-23 Identity = 58/160 (36.25%), Postives = 102/160 (63.75%), Query Frame = 1 Query: 226 LKDGALYNKS-SILLELSASDDISAYKREIEEKGFDVDEPSF*YGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGTKSSFEVVKLLLSASADVNCVDAYGNKLVDLIPVAMKSPLHSRKRAIELLLKGDHTI 702 + D A + S S LLE +A +D+ ++R++ + +++ Y R+ ++M E+RTP+M+A+++GS+ V+K+++ + ++N +CG D TALHCA +G + +S +VVKLLLS AD N DA+GN+ VD++ V+ +P + +E +LK D I Sbjct: 29 MNDAAEWEHSFSALLEFAADNDVEGFRRQLSDVSC-INQMGLWYRRQRFVRRMVLEQRTPLMVASLYGSLDVVKFILSFPEAELNLSCGPDKSTALHCAASGASVNSLDVVKLLLSVGADPNIPDAHGNRPVDVLVVSPHAP--GLRTILEEILKKDEII 185
BLAST of FC869294 vs. ExPASy Swiss-Prot
Match: C3H33_ORYSJ (Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.322e-21 Identity = 60/158 (37.97%), Postives = 91/158 (57.59%), Query Frame = 1 Query: 217 LPKLKDGALYNKSSILLELSASDDISAYKREIEEKGFDVDEPSF*YGRRI-GSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGTKSSFEVVKLLLSASADVNCVDAYGNKLVDLIPVAMKSPLHSRKRAIELLLK 687 LP+ + A +S+LLEL+A+DD++A +R +EE+ + YG G ++G E RT M+AA++GS VL YV+ + RA +DG T LH A AGG ++ +LLL+A A V+ + A G + DL+P A + ++AI LLLK Sbjct: 13 LPQQQKEATVMAASLLLELAAADDVAAVRRVVEEEKVSLGVAGLWYGPSASGVARLGMERRTAAMVAALYGSTGVLGYVVAAAPAEAARASETDGATPLHMAAAGGAANAVAATRLLLAAGASVDALSASGLRAGDLLPRAT-----AAEKAIRLLLK 165
BLAST of FC869294 vs. ExPASy Swiss-Prot
Match: C3H50_ORYSJ (Zinc finger CCCH domain-containing protein 50 OS=Oryza sativa subsp. japonica GN=Os07g0568300 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.110e-18 Identity = 56/139 (40.29%), Postives = 82/139 (58.99%), Query Frame = 1 Query: 235 GALYNKSSILLELSASDDISAYKREIEEKGFDVDEPSF*YGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGK-VDVNRACGSDGFTALHCAVAGGTKSSFEVVKLLLSASADVNCVDAYGNKLVDLIPVAMKSP 648 G ++ + LLEL+A+DD+ + + E G + E + G G K +E RTP+M+AA +GS V+ ++ G VDVNR G+DG TALHCA +GG++++ VVKLLL+A AD D+ G D+I SP Sbjct: 18 GGRRDRLAALLELAAADDVDGLRGALAEGGEEAAELADGVGLWYGRSK-AYEARTPLMVAATYGSAGVVSLLVGLGGCVDVNRRPGADGATALHCAASGGSRNAVAVVKLLLAAGADPATPDSAGRFPADVILAPPASP 155 The following BLAST results are available for this feature:
BLAST of FC869294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC869294 ID=FC869294; Name=FC869294; organism=Citrus clementina; type=EST; length=704bpback to top |