FC869297

Overview
NameFC869297
Unique NameFC869297
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length653
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9498 contig Ccv1_Contig9498:1..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869297 vs. ExPASy Swiss-Prot
Match: NPL41_ARATH (NPL4-like protein 1 OS=Arabidopsis thaliana GN=At3g63000 PE=1 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 8.073e-66
Identity = 119/165 (72.12%), Postives = 148/165 (89.70%), Query Frame = 1
Query:  136 LLRIRSRDGLERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGSIVFLSYDGERNVR-GPSFNPAGSFGRKMTMDDLIAKQMRVTRQENPHCESVSFDRDCADAFQQYVNETLAFAVKRGGFMYGTVLED 627
            +LR+RSRDGLERV+VDG H+TV++LKT+IQ QL+IP+ +QTLSTN+NLLLAKSPSD L FTDMA+P+  +SSLN++HGS+V+L+Y+GER +R GP+  PAGSFGRKMT++DLIA+QMRV RQE  HC+SVSFDRDCA+AFQ +VNE+LAFAVKRGGFMYG V ED
Sbjct:    3 MLRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSMVYLAYEGERTIRGGPAVTPAGSFGRKMTVEDLIARQMRVGRQEKAHCDSVSFDRDCANAFQHFVNESLAFAVKRGGFMYGNVSED 167          
BLAST of FC869297 vs. ExPASy Swiss-Prot
Match: NPL42_ARATH (NPL4-like protein 2 OS=Arabidopsis thaliana GN=At2g47970 PE=1 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.068e-65
Identity = 119/166 (71.69%), Postives = 147/166 (88.55%), Query Frame = 1
Query:  133 MLLRIRSRDGLERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGSIVFLSYDGERNVRG-PSFNPAGSFGRKMTMDDLIAKQMRVTRQENPHCESVSFDRDCADAFQQYVNETLAFAVKRGGFMYGTVLED 627
            M+LRIRSRDGLERVT +GAH+TV++LKT+I  QL+IP+  QTLSTN++LLLAK+P+DLL FTD+ +P+ PLSSLN+ HGS+++L+YDGER++ G P   PAGSFGRKMT+DDLIA+QMRVTRQE  HC+SVSFDRD A+AFQ YVNE+LAFAVKRGGFMYGTV E+
Sbjct:    2 MMLRIRSRDGLERVTAEGAHITVSQLKTLIADQLQIPLHKQTLSTNRDLLLAKTPADLLAFTDLTDPNLPLSSLNLGHGSMLYLAYDGERSIPGAPPVTPAGSFGRKMTVDDLIARQMRVTRQETSHCDSVSFDRDAANAFQHYVNESLAFAVKRGGFMYGTVTEE 167          
BLAST of FC869297 vs. ExPASy Swiss-Prot
Match: NPL4_ORYSJ (NPL4-like protein OS=Oryza sativa subsp. japonica GN=Os01g0377700 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.122e-38
Identity = 90/170 (52.94%), Postives = 117/170 (68.82%), Query Frame = 1
Query:  133 MLLRIRSRDGLERVTV-DGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGSIVFLSYDGERNVRGP----SFNPAGSFGRKMTMDDLIAKQMRVTRQENPHCESVSFDRDCADAFQQYVNETLAFAVKRGGFMYGTVLED 627
            M+LRIRSRDG +R+TV D A  TV +L+ +I +++ +PV  Q LS +  LLL  S S  L    +A+P  PLSSL +S+GS V+LSY  +     P    + + AGSFG+KMTMDDLIA+Q+RVTRQE P C + SFDRD A+AFQ +V E+LAFA KR GF+YG V  D
Sbjct:    1 MILRIRSRDGTDRITVPDPAAATVGDLQRLIAARVTVPVPLQRLSLDPALLLPSSASAAL----LADPAAPLSSLRLSNGSFVYLSYPPDARSSQPPPPKALSAAGSFGKKMTMDDLIARQIRVTRQEAPLCAAASFDRDSANAFQLHVAESLAFATKRAGFLYGRVDAD 166          
The following BLAST results are available for this feature:
BLAST of FC869297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
NPL41_ARATH8.073e-6672.12NPL4-like protein 1 OS=Arabidopsis thaliana GN=At3... [more]
NPL42_ARATH3.068e-6571.69NPL4-like protein 2 OS=Arabidopsis thaliana GN=At2... [more]
NPL4_ORYSJ7.122e-3852.94NPL4-like protein OS=Oryza sativa subsp. japonica ... [more]
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Properties
Property NameValue
Genbank descriptionC31010F10EF AbioticL1 Citrus clementina cDNA clone C31010F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869297 ID=FC869297; Name=FC869297; organism=Citrus clementina; type=EST; length=653bp
TAGGTGAAGTTTTGACTACGAAAGCAGCAATAATCCCACCGGAGGTAACA
CACCGACCCGAAATCACTACTTGTGCTGAAAGAAGCCTCGACCCCTGTTA
CCTCGATTCGAAACCCCAAAACCGCACCAAACATGCTGCTTCGCATCCGC
AGCAGAGACGGCCTCGAGCGCGTCACAGTCGACGGCGCACACGTCACAGT
CGCAGAACTGAAAACCATAATCCAATCGCAGCTCCGAATCCCCGTCGAAA
GCCAAACCCTATCCACTAACCAAAACCTCTTATTAGCCAAATCACCCTCC
GATCTCCTCCAATTCACCGACATGGCCAACCCAGACAGGCCCTTATCTTC
CCTCAACATCTCCCACGGCTCCATCGTTTTCTTATCCTACGACGGCGAGC
GAAACGTCAGGGGCCCCAGCTTCAACCCGGCCGGATCCTTCGGCCGGAAG
ATGACCATGGACGATTTGATCGCCAAACAGATGCGGGTCACCCGCCAGGA
GAATCCGCATTGCGAGTCCGTCTCCTTTGATCGTGACTGCGCCGACGCCT
TTCAGCAGTACGTCAATGAAACGCTGGCGTTTGCCGTCAAACGCGGAGGG
TTCATGTACGGCACTGTCTTGGAGGATAACGGGTAGAGGTGAATTTCATC
TAC
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