FC869306

Overview
NameFC869306
Unique NameFC869306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC869306_ssr46 microsatellite FC869306_ssr46:46..60. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9501 contig Ccv1_Contig9501:1..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDC2D_ANTMA (Cell division control protein 2 homolog D OS=Antirrhinum majus GN=CDC2D PE=2 SV=1)

HSP 1 Score: 409.453 bits (1051), Expect = 1.000e-113
Identity = 200/226 (88.50%), Postives = 212/226 (93.81%), Query Frame = 1
Query:   52 KEKKARMVMDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            +EK     MDAF KLEKVGEGTYGKVYRA EK+TGKIVALKKTRLHED+EGVPPTTLREVS+LRMLSRDPHVVRL+DVKQGQNKEG+TVLYLVFEYMDTDLKKYIRSF+QTGE+I    VKSLMYQLCKGVAFCHGHG+LHRDLKPHNLLMDRKTM LKIADLGLARA+TLPIKKYTHEILTLWYRAPEVLLG+THYS AVDMWSVACIFAELVT+ ALFPGDSEL
Sbjct:    3 EEKSKSSAMDAFVKLEKVGEGTYGKVYRAMEKSTGKIVALKKTRLHEDEEGVPPTTLREVSLLRMLSRDPHVVRLLDVKQGQNKEGKTVLYLVFEYMDTDLKKYIRSFKQTGESIAPMNVKSLMYQLCKGVAFCHGHGVLHRDLKPHNLLMDRKTMMLKIADLGLARAYTLPIKKYTHEILTLWYRAPEVLLGATHYSPAVDMWSVACIFAELVTQKALFPGDSEL 228          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CKB22_ARATH (Cyclin-dependent kinase B2-2 OS=Arabidopsis thaliana GN=CDKB2-2 PE=1 SV=2)

HSP 1 Score: 408.297 bits (1048), Expect = 2.228e-113
Identity = 197/224 (87.95%), Postives = 211/224 (94.20%), Query Frame = 1
Query:   58 KKARMVMDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            K A   M+AFEKLEKVGEGTYGKVYRAREKATG IVALKKTRLHED+EGVPPTTLRE+SILRML+RDPH+VRLMDVKQG NKEG+TVLYLVFEY+DTDLKK+IRSFRQ G+NIP NTVK LMYQLCKG+AFCHGHG+LHRDLKPHNLLMDRKTMTLKIADLGLARAFTLP+KKYTHEILTLWYRAPEVLLG+THYST VDMWSV CIFAELVTK A+F GDSEL
Sbjct:    7 KPAVSAMEAFEKLEKVGEGTYGKVYRAREKATGMIVALKKTRLHEDEEGVPPTTLREISILRMLARDPHIVRLMDVKQGINKEGKTVLYLVFEYVDTDLKKFIRSFRQAGQNIPQNTVKCLMYQLCKGMAFCHGHGVLHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPMKKYTHEILTLWYRAPEVLLGATHYSTGVDMWSVGCIFAELVTKQAIFAGDSEL 230          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CKB21_ARATH (Cyclin-dependent kinase B2-1 OS=Arabidopsis thaliana GN=CDKB2-1 PE=1 SV=2)

HSP 1 Score: 401.364 bits (1030), Expect = 2.723e-111
Identity = 194/218 (88.99%), Postives = 207/218 (94.95%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHED+EGVP TTLRE+SILRML+RDPHVVRLMDVKQG +KEG+TVLYLVFEYMDTD+KK+IRSFR TG+NIP  T+KSLMYQLCKG+AFCHGHGILHRDLKPHNLLMD KTM LKIADLGLARAFTLP+KKYTHEILTLWYRAPEVLLG+THYSTAVDMWSV CIFAELVT  A+F GDSEL
Sbjct:   11 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDEEGVPSTTLREISILRMLARDPHVVRLMDVKQGLSKEGKTVLYLVFEYMDTDVKKFIRSFRSTGKNIPTQTIKSLMYQLCKGMAFCHGHGILHRDLKPHNLLMDPKTMRLKIADLGLARAFTLPMKKYTHEILTLWYRAPEVLLGATHYSTAVDMWSVGCIFAELVTNQAIFQGDSEL 228          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CKB21_ORYSJ (Cyclin-dependent kinase B2-1 OS=Oryza sativa subsp. japonica GN=CDKB2-1 PE=1 SV=1)

HSP 1 Score: 371.318 bits (952), Expect = 3.018e-102
Identity = 178/218 (81.65%), Postives = 198/218 (90.83%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            MD +EKLEKVGEGTYGKVY+AREKATG+IVALKKTRL EDDEGVPPT LREVS+LRMLS+D HVVRL+D+KQGQNKEG+T+LYLVFEYMDTDLKK+IR+ RQ  + IPV TVK LMYQLCKGVAFCHG G+LHRDLKPHNLLMDRKTM LKIADLGL+R+FT+P+KKYTHEILTLWYRAPEVLLG+ HYST VD+WSV CIFAEL T   LF GDSE+
Sbjct:   25 MDLYEKLEKVGEGTYGKVYKAREKATGRIVALKKTRLPEDDEGVPPTALREVSLLRMLSQDSHVVRLLDLKQGQNKEGQTILYLVFEYMDTDLKKFIRAHRQNLQKIPVPTVKILMYQLCKGVAFCHGRGVLHRDLKPHNLLMDRKTMALKIADLGLSRSFTVPLKKYTHEILTLWYRAPEVLLGAAHYSTPVDIWSVGCIFAELATNQPLFAGDSEV 242          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CKB11_ORYSJ (Cyclin-dependent kinase B1-1 OS=Oryza sativa subsp. japonica GN=CDKB1-1 PE=2 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 3.032e-86
Identity = 152/221 (68.78%), Postives = 189/221 (85.52%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGEN---IPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            M+ +EKLEKVGEGTYGKVY+A+++ATG++VALKKTRL  D+EG+PPT LRE+SILR+LS+  +VVRL+ V+Q   K G+ VLYLVFE++DTDLKK++ ++R+ G N   +P N +KS +YQLCKGVA CHGHG+LHRDLKP NLL+D++   LKIADLGL RAFT+P+K YTHEI+TLWYRAPEVLLGSTHYST VD+WSV CIFAE+V + ALFPGDSEL
Sbjct:    1 MEKYEKLEKVGEGTYGKVYKAQDRATGQLVALKKTRLEMDEEGIPPTALREISILRLLSQSLYVVRLLSVEQA-TKNGKPVLYLVFEFLDTDLKKFVDAYRK-GPNPRPLPTNVIKSFLYQLCKGVAHCHGHGVLHRDLKPQNLLVDKEKGILKIADLGLGRAFTVPMKSYTHEIVTLWYRAPEVLLGSTHYSTGVDIWSVGCIFAEMVRRQALFPGDSEL 219          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CKB11_ARATH (Cyclin-dependent kinase B1-1 OS=Arabidopsis thaliana GN=CDKB1-1 PE=1 SV=2)

HSP 1 Score: 296.975 bits (759), Expect = 7.234e-80
Identity = 149/232 (64.22%), Postives = 182/232 (78.45%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQ-----GQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNT--VKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSE----LHSF 738
            M+ +EKLEKVGEGTYGKVY+A EK TGK+VALKKTRL  D+EG+PPT LRE+S+L+MLS   +VVRL+ V+       +++  ++ LYLVFEY+DTDLKK+I S+R+     P+    ++ LM+QLCKGVA CH HG+LHRDLKP NLL+ +    LKIADLGL RAFT+P+K YTHEI+TLWYRAPEVLLGSTHYST VDMWSV CIFAE+V + ALFPGDSE    LH F
Sbjct:    1 MEKYEKLEKVGEGTYGKVYKAMEKGTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSTSIYVVRLLCVEHVHQPSTKSQSTKSNLYLVFEYLDTDLKKFIDSYRKGPNPKPLEPFLIQKLMFQLCKGVAHCHSHGVLHRDLKPQNLLLVKDKELLKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTGVDMWSVGCIFAEMVRRQALFPGDSEFQQLLHIF 232          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDC2C_ANTMA (Cell division control protein 2 homolog C OS=Antirrhinum majus GN=CDC2C PE=2 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.234e-79
Identity = 152/229 (66.38%), Postives = 185/229 (80.79%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQ-NKEGRTVLYLVFEYMDTDLKKYIRSFRQTGEN---IPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSE----LHSF 738
            M+ +EKLEKVGEGTYGKVY+A EK+TG++VALKKTRL  D+EGVPPT LREVS+L+MLS+  +VVRL+ V+     K G+ +LYLVFEY+DTDLKK+I S R+ G N   +P   ++S ++QLCKGV+ CH HG+LHRDLKP NLL+D+    LKIADLGLARAFT+P+K YTHEI+TL YRAPEVLLGS+HYSTAVDM SV CIFAE+V + ALFPGDSE    LH F
Sbjct:    1 MEKYEKLEKVGEGTYGKVYKALEKSTGQVVALKKTRLEMDEEGVPPTALREVSLLQMLSQSLYVVRLLSVEHVDCAKNGKPLLYLVFEYLDTDLKKFIDSHRK-GPNPRPLPPQQIQSFLFQLCKGVSHCHAHGVLHRDLKPQNLLLDKDKGVLKIADLGLARAFTVPLKSYTHEIVTLSYRAPEVLLGSSHYSTAVDMSSVGCIFAEMVRRQALFPGDSEFQQLLHIF 228          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CKB12_ARATH (Cyclin-dependent kinase B1-2 OS=Arabidopsis thaliana GN=CDKB1-2 PE=1 SV=2)

HSP 1 Score: 294.278 bits (752), Expect = 4.689e-79
Identity = 149/234 (63.68%), Postives = 181/234 (77.35%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTV-------LYLVFEYMDTDLKKYIRSFRQTGENIPVNT--VKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSE----LHSF 738
            M+ +EKLEKVGEGTYGKVY+A EK TGK+VALKKTRL  D+EG+PPT LRE+S+L+MLS+  ++VRL+ V+     +  TV       LYLVFEY+DTDLKK+I S R+     P+    V+  M+QL KGVA CH HG+LHRDLKP NLL+D+    LKIADLGL+RAFT+P+K YTHEI+TLWYRAPEVLLGSTHYSTAVD+WSV CIFAE++ + ALFPGDSE    LH F
Sbjct:    1 MEKYEKLEKVGEGTYGKVYKAMEKTTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSQSIYIVRLLCVEHVIQSKDSTVSHSPKSNLYLVFEYLDTDLKKFIDSHRKGSNPRPLEASLVQRFMFQLFKGVAHCHSHGVLHRDLKPQNLLLDKDKGILKIADLGLSRAFTVPLKAYTHEIVTLWYRAPEVLLGSTHYSTAVDIWSVGCIFAEMIRRQALFPGDSEFQQLLHIF 234          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDKA1_ARATH (Cyclin-dependent kinase A-1 OS=Arabidopsis thaliana GN=CDKA-1 PE=1 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 5.745e-69
Identity = 119/218 (54.59%), Postives = 170/218 (77.98%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            MD +EK+EK+GEGTYG VY+AR+K T + +ALKK RL ++DEGVP T +RE+S+L+ +    ++V+L DV   + +     LYLVFEY+D DLKK++ S     +++  + +K+ +YQ+ +G+A+CH H +LHRDLKP NLL+DR+T +LK+AD GLARAF +P++ +THE++TLWYRAPE+LLGS HYST VD+WSV CIFAE++++  LFPGDSE+
Sbjct:    1 MDQYEKVEKIGEGTYGVVYKARDKVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHS-NIVKLQDVVHSEKR-----LYLVFEYLDLDLKKHMDSTPDFSKDL--HMIKTYLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSHHYSTPVDIWSVGCIFAEMISQKPLFPGDSEI 210          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDC2_CHERU (Cell division control protein 2 homolog OS=Chenopodium rubrum GN=CDC2 PE=2 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 2.183e-68
Identity = 121/218 (55.50%), Postives = 165/218 (75.69%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            MD +EK+EK+GEGTYG VY+AR+K T + +ALKK RL ++DEGVP T +RE+S+L+ +    ++VRL DV   + +     LYLVFEY+D DLKK++ S     ++     +K  +YQ+ +G+A+CH H +LHRDLKP NLL+DR+T  LK+AD GLARAF +P++ +THE++TLWYRAPE+LLGS HYST VD+WSV CIFAE+V +  LFPGDSE+
Sbjct:    1 MDQYEKVEKIGEGTYGVVYKARDKVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHG-NIVRLQDVVHSEKR-----LYLVFEYLDLDLKKHMDSCPDFAKD--PRMIKRFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRQTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQKPLFPGDSEI 210          
The following BLAST results are available for this feature:
BLAST of FC869306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDC2D_ANTMA1.000e-11388.50Cell division control protein 2 homolog D OS=Antir... [more]
CKB22_ARATH2.228e-11387.95Cyclin-dependent kinase B2-2 OS=Arabidopsis thalia... [more]
CKB21_ARATH2.723e-11188.99Cyclin-dependent kinase B2-1 OS=Arabidopsis thalia... [more]
CKB21_ORYSJ3.018e-10281.65Cyclin-dependent kinase B2-1 OS=Oryza sativa subsp... [more]
CKB11_ORYSJ3.032e-8668.78Cyclin-dependent kinase B1-1 OS=Oryza sativa subsp... [more]
CKB11_ARATH7.234e-8064.22Cyclin-dependent kinase B1-1 OS=Arabidopsis thalia... [more]
CDC2C_ANTMA1.234e-7966.38Cell division control protein 2 homolog C OS=Antir... [more]
CKB12_ARATH4.689e-7963.68Cyclin-dependent kinase B1-2 OS=Arabidopsis thalia... [more]
CDKA1_ARATH5.745e-6954.59Cyclin-dependent kinase A-1 OS=Arabidopsis thalian... [more]
CDC2_CHERU2.183e-6855.50Cell division control protein 2 homolog OS=Chenopo... [more]

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Properties
Property NameValue
Genbank descriptionC31010G08EF AbioticL1 Citrus clementina cDNA clone C31010G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869306 ID=FC869306; Name=FC869306; organism=Citrus clementina; type=EST; length=741bp
CCTTGGCCGGAAAAAGTTGATTTTATTTTATCTTTTGAAAGAGTAAAAAG
AAAAGAAAAGAAAGCAAGAATGGTGATGGACGCATTTGAGAAGCTAGAGA
AAGTAGGAGAAGGGACGTACGGGAAAGTATACAGAGCAAGAGAGAAGGCA
ACTGGGAAGATCGTTGCTCTCAAGAAGACTCGTCTCCACGAGGACGATGA
AGGCGTACCCCCAACCACTCTCCGGGAGGTCTCCATCTTGCGCATGCTCT
CTCGCGATCCCCATGTTGTTAGGTTGATGGATGTCAAACAAGGCCAGAAC
AAGGAAGGCAGGACGGTGCTCTACCTTGTTTTTGAGTACATGGACACTGA
TCTGAAGAAGTACATCCGAAGCTTCCGCCAAACTGGAGAGAACATTCCTG
TTAACACTGTCAAGAGCTTAATGTACCAACTTTGCAAGGGTGTTGCTTTC
TGCCATGGACATGGAATCCTTCATAGGGACCTTAAGCCTCACAATCTGTT
GATGGACCGAAAGACTATGACACTTAAGATAGCAGATCTTGGTTTAGCTC
GAGCATTTACTCTTCCAATTAAGAAATATACTCATGAGATATTGACCCTC
TGGTATAGGGCTCCGGAAGTCCTTTTGGGGTCCACCCATTACTCAACTGC
AGTTGATATGTGGTCTGTTGCCTGTATATTTGCGGAACTGGTTACNAAGA
CAGCACTTTTCCCTGGAGATTCTGAACTCCACAGCTTCTGC
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