FC869307

Overview
NameFC869307
Unique NameFC869307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig17 contig Ccv1_Contig17:99..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869307 vs. ExPASy Swiss-Prot
Match: CRD1_EUPES (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Euphorbia esula GN=CRD1 PE=3 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.569e-71
Identity = 145/204 (71.08%), Postives = 158/204 (77.45%), Query Frame = 2
Query:  110 PRFSYPKATCTSLSTRFCTIXXXXXXXXXXXXXXXXXXXXXNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDF--IMHWTWAS*QS*EITFFKPKLSFMHIFI 715
            P+F  P  T +S S++F TI                     NK  I ETLLTPRFYTTDFDEMETLFNTEINKKLNQ+EFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDF   +   + + ++ + TFFKPK  F   ++
Sbjct:   13 PKFINPMRTFSS-SSKFSTIKMSATSQSNTTTTATKPSKKGNKKEINETLLTPRFYTTDFDEMETLFNTEINKKLNQSEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLT-KARKYTFFKPKFIFYATYL 214          
BLAST of FC869307 vs. ExPASy Swiss-Prot
Match: CRD1_GOSHI (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Gossypium hirsutum GN=CRD1 PE=2 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 4.534e-68
Identity = 132/161 (81.99%), Postives = 141/161 (87.58%), Query Frame = 2
Query:  236 KTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFIMHWTWA-S*QS*EITFFKPKLSFMHIFI 715
            KTAIKETLLTPRFYTTDFDEME LFNTEINK LNQ+EFE+LLQEFKTDYNQTHFVRNKEFKEAADK+ GPLRQIFVEF ERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDF +        ++ + TFFKPK  F   ++
Sbjct:   54 KTAIKETLLTPRFYTTDFDEMEALFNTEINKNLNQSEFESLLQEFKTDYNQTHFVRNKEFKEAADKIDGPLRQIFVEFSERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNLALDLGFLTKARKYTFFKPKFIFYATYL 214          
BLAST of FC869307 vs. ExPASy Swiss-Prot
Match: CRD1_ARATH (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Arabidopsis thaliana GN=CRD1 PE=2 SV=2)

HSP 1 Score: 254.218 bits (648), Expect = 5.013e-67
Identity = 130/161 (80.75%), Postives = 141/161 (87.58%), Query Frame = 2
Query:  236 KTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFIMHWTWA-S*QS*EITFFKPKLSFMHIFI 715
            K  I+E+LLTPRFYTTDF+EME LFNTEINK LN+AEFEALLQEFKTDYNQTHFVRNKEFKEAADK+QGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDF +        ++ + TFFKPK  F   ++
Sbjct:   58 KKEIQESLLTPRFYTTDFEEMEQLFNTEINKNLNEAEFEALLQEFKTDYNQTHFVRNKEFKEAADKLQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNLALDLGFLTKARKYTFFKPKFIFYATYL 218          
BLAST of FC869307 vs. ExPASy Swiss-Prot
Match: CRD1_HORVU (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Hordeum vulgare GN=CRD1 PE=1 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.488e-66
Identity = 128/161 (79.50%), Postives = 139/161 (86.34%), Query Frame = 2
Query:  236 KTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFIMHWTWA-S*QS*EITFFKPKLSFMHIFI 715
            KT + E+LLTPRFYTTDFDEME LFN EINK+LNQ EF+ALLQEFKTDYNQTHF+RN EFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDF +        ++ + TFFKPK  F   ++
Sbjct:   66 KTEVNESLLTPRFYTTDFDEMEQLFNAEINKQLNQDEFDALLQEFKTDYNQTHFIRNPEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNLALDLGFLTKARKYTFFKPKFIFYATYL 226          
BLAST of FC869307 vs. ExPASy Swiss-Prot
Match: CTH1_CHLRE (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 2, chloroplastic OS=Chlamydomonas reinhardtii GN=CTH1 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.616e-57
Identity = 112/161 (69.57%), Postives = 130/161 (80.75%), Query Frame = 2
Query:  236 KTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFIMHWTWA-S*QS*EITFFKPKLSFMHIFI 715
            K A  ETLLTPRFYTTDFDEME LF+ E+NK ++  EFEA+L EFK DYNQ HFVRN+ FKEAA+K+QGP R+IF+EFLERSCTAEFSGFLLYKELGRRLK TNPVVAEIF+LMSRDEARHAGFLNK +SDF +        ++ + TFFKPK  F   ++
Sbjct:   56 KVASDETLLTPRFYTTDFDEMERLFSLELNKNMDMEEFEAMLNEFKLDYNQRHFVRNETFKEAAEKIQGPTRKIFIEFLERSCTAEFSGFLLYKELGRRLKATNPVVAEIFTLMSRDEARHAGFLNKAMSDFNLALDLGFLTKNRKYTFFKPKFIFYATYL 216          
BLAST of FC869307 vs. ExPASy Swiss-Prot
Match: CRD1_CHLRE (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 1, chloroplastic OS=Chlamydomonas reinhardtii GN=CRD1 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.569e-50
Identity = 102/161 (63.35%), Postives = 119/161 (73.91%), Query Frame = 2
Query:  236 KTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFIMHWTWA-S*QS*EITFFKPKLSFMHIFI 715
            K A KETLLTPRFYTTDFDEME LF+ EIN  L+  E  A L EF+ DYN+ HFVRN+ FK AADK+ G  R+IF+EFLERSCTAEFSGFLLYKEL RR+K ++P VAE+F LMSRDEARHAGFLNK LSDF +        ++   T+FKPK      F+
Sbjct:   56 KVAAKETLLTPRFYTTDFDEMEQLFSKEINPNLDMEELNACLNEFRNDYNKVHFVRNETFKAAADKVTGETRRIFIEFLERSCTAEFSGFLLYKELARRMKASSPEVAEMFLLMSRDEARHAGFLNKALSDFNLALDLGFLTKNRTYTYFKPKFIIYATFL 216          
BLAST of FC869307 vs. ExPASy Swiss-Prot
Match: ACSF1_SYNY3 (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 1 OS=Synechocystis sp. (strain PCC 6803) GN=acsF1 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.321e-46
Identity = 95/161 (59.01%), Postives = 118/161 (73.29%), Query Frame = 2
Query:  236 KTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFIMHWTWA-S*QS*EITFFKPKLSFMHIFI 715
            KT  KET+LTPRFYTTDFDEM      +++   N+ E  A+L+EF+ DYN+ HFVRN+ F ++ D + G  RQ+FVEFLERSCTAEFSGFLLYKELGRRLK  NP++AE F+LMSRDEARHAGFLNK +SDF +        +S + TFFKPK  F   ++
Sbjct:   18 KTPAKETILTPRFYTTDFDEM-----AKMDISPNEDELRAILEEFRVDYNRHHFVRNESFNKSWDHIDGEKRQLFVEFLERSCTAEFSGFLLYKELGRRLKNKNPLLAECFNLMSRDEARHAGFLNKAMSDFNLSLDLGFLTKSRKYTFFKPKFIFYATYL 173          
BLAST of FC869307 vs. ExPASy Swiss-Prot
Match: ACSF_TRIEI (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Trichodesmium erythraeum (strain IMS101) GN=acsF PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.421e-45
Identity = 93/161 (57.76%), Postives = 119/161 (73.91%), Query Frame = 2
Query:  236 KTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFIMHWTWA-S*QS*EITFFKPKLSFMHIFI 715
            K   KET+LTPRFYTTDFDEM      +++  +N+ E  A+L+EF+ DYN+ HFVRN+EF ++ D + G  R++FVEFLERSCTAEFSGFLLYKELGRRLK  +P++AE F+LMSRDEARHAGFLNK +SDF +        +S + TFFKPK  F   ++
Sbjct:   18 KVPAKETILTPRFYTTDFDEM-----AKMDISVNEDELMAILEEFRADYNRHHFVRNEEFAQSWDHIDGETRRLFVEFLERSCTAEFSGFLLYKELGRRLKNKSPILAECFTLMSRDEARHAGFLNKAMSDFNLSLDLGFLTKSRKYTFFKPKFIFYATYL 173          
BLAST of FC869307 vs. ExPASy Swiss-Prot
Match: ACSF3_ANASP (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 3 OS=Anabaena sp. (strain PCC 7120) GN=acsF3 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.130e-45
Identity = 95/161 (59.01%), Postives = 118/161 (73.29%), Query Frame = 2
Query:  236 KTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFIMHWTWA-S*QS*EITFFKPKLSFMHIFI 715
            K   KETLLTPRFYTTDFDEM       ++  +N+ E  A+L+EF+TDYN+ HFVR+ EF+++ D + G  R++FVEFLERSCTAEFSGFLLYKELGRRLK  +PV+AE F+LMSRDEARHAGFLNK +SDF +        +S   TFFKPK  F   ++
Sbjct:   18 KVPAKETLLTPRFYTTDFDEM-----ARMDISVNEDELLAILEEFRTDYNRHHFVRDAEFEKSWDHIDGDTRRLFVEFLERSCTAEFSGFLLYKELGRRLKDKSPVLAECFNLMSRDEARHAGFLNKAMSDFNLSLDLGFLTKSRNYTFFKPKFIFYATYL 173          
BLAST of FC869307 vs. ExPASy Swiss-Prot
Match: ACSF_GRATL (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Gracilaria tenuistipitata var. liui GN=acsF PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.202e-44
Identity = 93/162 (57.41%), Postives = 121/162 (74.69%), Query Frame = 2
Query:  233 NKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFIMHWTWA-S*QS*EITFFKPKLSFMHIFI 715
            ++T +KETLLTPRFYTTDFDEM  L   +I+  ++  EFEALLQEF+ DYN+ HF+R++EF+++ + +    + +FVEFLERSCTAEFSGFLLYKEL R+L K+NPV+AE F LMSRDEARHAGFLNK +SDF +        +S + TFF PK  F   ++
Sbjct:    8 SQTPVKETLLTPRFYTTDFDEMSKL---DISSNID--EFEALLQEFRADYNRQHFIRDQEFEQSWNNLDSGTKALFVEFLERSCTAEFSGFLLYKELSRKLDKSNPVIAECFLLMSRDEARHAGFLNKAMSDFNLSLDLGFLTKSRKYTFFAPKFIFYATYL 164          
The following BLAST results are available for this feature:
BLAST of FC869307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
CRD1_EUPES2.569e-7171.08Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
CRD1_GOSHI4.534e-6881.99Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
CRD1_ARATH5.013e-6780.75Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
CRD1_HORVU2.488e-6679.50Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
CTH1_CHLRE1.616e-5769.57Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
CRD1_CHLRE5.569e-5063.35Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF1_SYNY38.321e-4659.01Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_TRIEI2.421e-4557.76Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF3_ANASP4.130e-4559.01Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_GRATL1.202e-4457.41Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]

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Properties
Property NameValue
Genbank descriptionC31010G09EF AbioticL1 Citrus clementina cDNA clone C31010G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869307 ID=FC869307; Name=FC869307; organism=Citrus clementina; type=EST; length=716bp
AAGCCACTCAGTTTCCCTCTAGTACAAAAACTGGTTCCAGAAATGGCAGC
TGAGATGGCACTGGTCAAACTTGACCAGCAAATTCAGCACCATCGCCACC
ACTACTAAGCCTAGGTTCAGCTACCCGAAAGCAACATGTACATCTCTGAG
CACAAGATTTTGTACAATCAAAATGTCAGCAACTTCAGAGCAAGCGGCTG
CTGCCACTGCCCAAAAGCCAAGCAAGAAATCAAACAAAACTGCTATCAAG
GAGACCCTTCTGACACCAAGGTTTTATACAACAGATTTTGATGAAATGGA
GACCCTTTTCAACACTGAGATCAACAAGAAGCTCAACCAGGCTGAATTTG
AGGCATTGCTTCAAGAATTCAAGACTGATTATAACCAGACTCACTTTGTG
AGGAACAAGGAGTTCAAGGAAGCTGCTGACAAGATGCAAGGCCCTCTCAG
GCAGATCTTTGTTGAGTTCTTGGAGAGGTCTTGCACTGCTGAGTTCTCTG
GTTTCCTTCTTTACAAAGAGCTCGGAAGGAGACTCAAGAAAACCAACCCA
GTGGTAGCTGAGATTTTCTCTCTGATGTCCAGGGATGAAGCCAGGCATGC
CGGGTTTCTGAACAAGGGGCTATCTGATTTCATTATGCATTGGACTTGGG
CTTCCTGACAAAGCTAGGAAATCACATTTTTCAAGCCAAAGTTATCTTTT
ATGCACATATTTATCT
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