FC869313

Overview
NameFC869313
Unique NameFC869313
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869313 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.644e-27
Identity = 83/211 (39.34%), Postives = 110/211 (52.13%), Query Frame = 1
Query:  187 VPASSEPKTNVHSKDIVHSPENNLCARLYIP----NQRQNKKL------------PLLVYFHGGGFCIETAFSPTYHNYLNTLVSEANVIAVSVDYRRAPENPVPCAHDDSWTALKWVASHVNGEGPEDWLNCFADFQ-RVFFSGDSAGANIAHHMGMRHGRRILDGVNVVGIVLIHPYFLGREAVGNE-TADAK------TRDWVAGLWR 747
            VPA+S P   V S D V S   NL  R+Y P    +Q ++  L            P+L++FHGG F   +A S  Y  +   LV+   V+ VSVDYRR+PE+  PCA+DD W AL WV S V       WL    D    V+ +GDS+G NIAH++ +R      +GV V+G +L+HP F G+E   +E T D K       RDW    WR
Sbjct:   53 VPANSFPLDGVFSFDHVDST-TNLLTRIYQPASLLHQTRHGTLELTKPLSTTEIVPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRV-------WLQSGKDSNVYVYLAGDSSGGNIAHNVAVRATN---EGVKVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQDRDW---YWR 249          
BLAST of FC869313 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.642e-26
Identity = 72/208 (34.62%), Postives = 104/208 (50.00%), Query Frame = 1
Query:  187 VPASSEPKTNVHSKDIVHSPENNLCARLYIP-------------NQRQNKKLPLLVYFHGGGFCIETAFSPTYHNYLNTLVSEANVIAVSVDYRRAPENPVPCAHDDSWTALKWVASHVNGEGPEDWLNCFADFQ-RVFFSGDSAGANIAHHMGMRHGRRILDGVNVVGIVLIHPYFLGREAVGNET-------ADAKTRDWVAGLWR 747
            VPA++ P   V S D++   + NL +R+Y P             N    + +P++V+FHGG F   +A S  Y      LV     + VSV+YRRAPEN  PCA+DD W  LKWV S         WL    D + R+F +GDS+G NI H++ +   R +   ++V+G +L++P F G E   +E           + RDW    WR
Sbjct:   53 VPANANPVNGVFSFDVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNS-------SSWLRSKKDSKVRIFLAGDSSGGNIVHNVAV---RAVESRIDVLGNILLNPMFGGTERTESEKRLDGKYFVTVRDRDW---YWR 247          
BLAST of FC869313 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.659e-26
Identity = 70/204 (34.31%), Postives = 103/204 (50.49%), Query Frame = 1
Query:  187 VPASSEPKTNVHSKDIVHSPENNLCARLYIPNQRQNKK---------------LPLLVYFHGGGFCIETAFSPTYHNYLNTLVSEANVIAVSVDYRRAPENPVPCAHDDSWTALKWVASHVNGEGPEDWLNCFADFQ-RVFFSGDSAGANIAHHMGMRHGRRILDGVNVVGIVLIHPYFLGREAVGNETA-------DAKTRDW 729
            V A++ P   V S D++     NL +R+Y P     ++               +P++++FHGG F   +A S  Y      LV     + VSV+YRRAPENP PCA+DD W AL WV S         WL    D +  +F +GDS+G NIAH++ +R G     G++V+G +L++P F G E   +E +         + RDW
Sbjct:   53 VTANANPVDGVFSFDVLIDRRINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNS-------RSWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGE---SGIDVLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDW 246          
BLAST of FC869313 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.458e-23
Identity = 75/226 (33.19%), Postives = 106/226 (46.90%), Query Frame = 1
Query:  151 DGKVERLKGNDI---VPASSEPKTNVHSKDIVHSPENNLCARLY----------------------IPNQRQNKKLPLLVYFHGGGFCIETAFSPTYHNYLNTLVSEANVIAVSVDYRRAPENPVPCAHDDSWTALKWVASHVNGEGPEDWLNCFADFQ-RVFFSGDSAGANIAHHMGMRHGRRILDGVNVVGIVLIHPYFLGREAVGNET-------ADAKTRDW 729
            DG  ER  G  +   VPA++ P   V S D +      L  R+Y                      + +    +  P++++FHGG F   +A S  Y +     V  +  + VSV+YRRAPE+  PCA+DD WTALKWV S       + ++    D Q RVF SGDS+G NIAHH+ +R      +GV V G +L++  F G E   +E           + RDW
Sbjct:   38 DGTFERDLGEYLDRRVPANARPLEGVSSFDHIIDQSVGLEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMS-------QPFMRSGGDAQARVFLSGDSSGGNIAHHVAVRAAD---EGVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDW 253          
BLAST of FC869313 vs. ExPASy Swiss-Prot
Match: LIP2_MORS1 (Lipase 2 OS=Moraxella sp. (strain TA144) GN=lip2 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.302e-12
Identity = 45/137 (32.85%), Postives = 67/137 (48.91%), Query Frame = 1
Query:  196 SSEPKTNVHSKDIVHSPENNLCARLYIPN----QRQNKKLPLLVYFHGGGFCIETAFSPTYHNYLNTLVSEANVIAVSVDYRRAPENPVPCAHDDSWTALKWVASHVNGEGPEDWLNCFADFQRVFFSGDSAGANIA 594
            S+E   +   K I ++   ++  R Y  +    +R++     +++FHGGGFCI      T+H + +T+ ++     VSVDYR APE P P A  D   A  W+A H    G        A   R+  SGDSAG  +A
Sbjct:  119 STENAVSWQDKTIANADGGDMTVRCYQKSTQNSERKSTDEAAMLFFHGGGFCIGDI--DTHHEFCHTVCAQTGWAVVSVDYRMAPEYPAPTALKDCLAAYAWLAEHSQSLG--------ASPSRIVLSGDSAGGCLA 245          
BLAST of FC869313 vs. ExPASy Swiss-Prot
Match: AAAD_RABIT (Arylacetamide deacetylase OS=Oryctolagus cuniculus GN=AADAC PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.129e-12
Identity = 43/131 (32.82%), Postives = 64/131 (48.85%), Query Frame = 1
Query:  205 PKTNVHSKDIVHSPENNLCARLYIPNQRQNKKLPLLVYFHGGGFCIETAFSPTYHNYLNTLVSEANVIAVSVDYRRAPENPVPCAHDDSWTALKWVASHVNGEGPEDWLNCF-ADFQRVFFSGDSAGANIA 594
            P T+  +  +  +  NN+  R+Y+P ++       L Y HGGG+C+ +A    Y           +V+ VS +YR APE   P   +D + ALKW          +D L  +  D +RV  SGDSAG N+A
Sbjct:   71 PPTSDENVTVTETTFNNVPVRVYVPKRKSKTLRRGLFYIHGGGWCVGSAALSGYDLLSRRTADRLDVVVVSTNYRLAPEYHFPIQFEDVYDALKWFLR-------QDVLEKYGVDPERVGVSGDSAGGNLA 194          
The following BLAST results are available for this feature:
BLAST of FC869313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
GI1L2_ARATH5.644e-2739.34Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GI1L3_ARATH1.642e-2634.62Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L1_ARATH3.659e-2634.31Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GID1_ORYSJ6.458e-2333.19Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
LIP2_MORS12.302e-1232.85Lipase 2 OS=Moraxella sp. (strain TA144) GN=lip2 P... [more]
AAAD_RABIT5.129e-1232.82Arylacetamide deacetylase OS=Oryctolagus cuniculus... [more]
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Properties
Property NameValue
Genbank descriptionC31010H05EF AbioticL1 Citrus clementina cDNA clone C31010H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869313 ID=FC869313; Name=FC869313; organism=Citrus clementina; type=EST; length=758bp
TATTTTTTTGCTCCTCTATCCTTTCTCCTTCTCCGGCAGACCAAACAAAG
GCCGTCAATATTTTTCTGCACTTTTTCTCTACCTATGGATTCCACAGAGC
CGGCAGCAGATATAGCCATAGACCTCTCTCCCATGATAAAAGTATACAAA
GATGGCAAAGTAGAAAGGCTCAAAGGAAACGACATCGTTCCTGCATCATC
TGAGCCCAAAACAAACGTTCATTCCAAAGACATTGTGCATTCACCAGAAA
ACAATCTATGTGCTCGGCTTTACATTCCAAACCAAAGACAAAACAAAAAA
CTTCCCCTTCTTGTTTATTTTCATGGCGGAGGCTTTTGCATCGAAACCGC
CTTTTCTCCCACTTACCACAATTACCTCAACACCTTAGTCTCTGAAGCTA
ACGTCATCGCAGTCTCGGTTGATTATCGGAGAGCCCCGGAGAATCCTGTC
CCTTGCGCTCATGATGATTCATGGACTGCACTCAAGTGGGTTGCTTCCCA
TGTTAACGGAGAAGGCCCTGAAGATTGGCTCAACTGTTTCGCTGATTTCC
AGCGAGTGTTTTTTTCTGGTGACAGTGCTGGCGCTAACATAGCTCATCAC
ATGGGCATGAGACATGGTCGAAGAATTCTCGATGGTGTTAATGTTGTTGG
CATTGTTTTAATTCATCCGTATTTTCTGGGCAGAGAAGCTGTTGGTAATG
AAACAGCTGACGCTAAGACAAGAGACTGGGTCGCGGGATTGTGGAGATTG
ACTTGTCC
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