FC871109

Overview
NameFC871109
Unique NameFC871109
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length459
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15220 contig Ccv1_Contig15220:515..973. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871109 vs. ExPASy Swiss-Prot
Match: IDHC_TOBAC (Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.168e-23
Identity = 51/60 (85.00%), Postives = 58/60 (96.67%), Query Frame = 2
Query:    2 NARLLDFTEKLEAACVGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVANDLRARL 181
            N RLLDFTEKLEAAC+G VESGKMTKDLALIIHGSK++R+HYLNTEEFIDAVA++L+ARL
Sbjct:  351 NERLLDFTEKLEAACIGAVESGKMTKDLALIIHGSKLSRDHYLNTEEFIDAVADELKARL 410          
BLAST of FC871109 vs. ExPASy Swiss-Prot
Match: IDHC_SOYBN (Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 3.698e-23
Identity = 51/61 (83.61%), Postives = 58/61 (95.08%), Query Frame = 2
Query:    2 NARLLDFTEKLEAACVGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVANDLRARLS 184
            NA+LLDFTEKLEAAC+G VE+GKMTKDLALI+HGSK++REHYLNTEEFIDAVA +L ARLS
Sbjct:  352 NAKLLDFTEKLEAACIGVVEAGKMTKDLALILHGSKLSREHYLNTEEFIDAVAAELSARLS 412          
BLAST of FC871109 vs. ExPASy Swiss-Prot
Match: IDHP_MEDSA (Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.835e-22
Identity = 49/61 (80.33%), Postives = 57/61 (93.44%), Query Frame = 2
Query:    2 NARLLDFTEKLEAACVGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVANDLRARLS 184
            NA LLDFTEKLEAAC+G VESGKMTKDLALI+HGSK++REHYLNTEEFIDAVA +L+ ++S
Sbjct:  372 NATLLDFTEKLEAACIGVVESGKMTKDLALILHGSKLSREHYLNTEEFIDAVAAELKTKIS 432          
BLAST of FC871109 vs. ExPASy Swiss-Prot
Match: IDHC_SOLTU (Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.397e-22
Identity = 52/61 (85.25%), Postives = 58/61 (95.08%), Query Frame = 2
Query:    2 NARLLDFTEKLEAACVGTVESGKMTKDLAL-IIHGSKMTREHYLNTEEFIDAVANDLRARL 181
            N RLLDFTEKLEAAC+G VESGKMTKDLAL IIHGSK++REHYLNTEEFIDAVA++L+ARL
Sbjct:  351 NERLLDFTEKLEAACIGAVESGKMTKDLALIIIHGSKLSREHYLNTEEFIDAVADELKARL 411          
The following BLAST results are available for this feature:
BLAST of FC871109 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
IDHC_TOBAC2.168e-2385.00Isocitrate dehydrogenase [NADP] OS=Nicotiana tabac... [more]
IDHC_SOYBN3.698e-2383.61Isocitrate dehydrogenase [NADP] OS=Glycine max GN=... [more]
IDHP_MEDSA1.835e-2280.33Isocitrate dehydrogenase [NADP], chloroplastic (Fr... [more]
IDHC_SOLTU2.397e-2285.25Isocitrate dehydrogenase [NADP] OS=Solanum tuberos... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA3AE06ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA3AE06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871109 ID=FC871109; Name=FC871109; organism=Citrus clementina; type=EST; length=459bp
CAATGCTAGGCTATTGGATTTTACTGAGAAACTAGAAGCTGCATGTGTTG
GCACTGTTGAATCTGGGAAGATGACCAAGGATCTTGCACTTATTATCCAT
GGATCTAAGATGACTAGGGAACACTATCTGAATACTGAAGAGTTCATTGA
TGCTGTGGCCAACGATCTAAGAGCAAGACTCTCTGGCAAAGCATGATTTT
TTTGTTGCAGATGCTACACATTCAAAGGTAAAGACTTGGGGAAGCTTCCC
TTGGTTATCTTTTTCATATTATGCTGAGAAGAAATAATTGAAGAGGGGAA
AATTGGGGATTGGGATTTGGTTCTCTTCTAATTCCTACAATAGACTGCTT
TCCTGTTGATCGACAAACTCTCATTTTCATGCAAGCAAATGTCTTGAACA
TGGCTTGTTATAAACAAAACTATTGCTGACAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
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